Array 1 72809-75928 **** Predicted by CRISPRDetect 2.4 *** >NZ_RJJJ01000006.1 Ornithobacterium rhinotracheale strain LMG 18856 NODE_6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 72809 47 100.0 30 ............................................... AACACACACATTCACCCTTTACACTATCAC 72886 47 100.0 29 ............................................... TCCGTAGGAGAACTAATTGATATCATCCA 72962 47 100.0 30 ............................................... TTGAAAGATACCATTATCAATACAACCAAG 73039 47 100.0 30 ............................................... TACGAATTGGTCGCTCATCAAGTCCTTTTT 73116 47 100.0 30 ............................................... TTTATATTCATAATTAAATATTCGTATTTA 73193 47 100.0 30 ............................................... CCTCAGGACCCCCCCTGTAACGCCTGCCCT 73270 47 100.0 30 ............................................... ACAATCATCACGACTTGAAAGCACTCGCAT 73347 47 100.0 30 ............................................... TGTATAGGGAATTTTGTAAGAAAAGAGTAT 73424 47 100.0 29 ............................................... CTATCTTTTTTTGCCATCTTTAATACCCA 73500 47 100.0 29 ............................................... CTATATTATACAAGTAGAAATGAAGATGG 73576 47 100.0 30 ............................................... TTTGTCAGAGTTTAAGCTGTAAGCCCAAAG 73653 47 100.0 30 ............................................... TCGTCATTGTAAAGCGTTACCGTCGTTATT 73730 47 100.0 30 ............................................... TTCTAAGTGCTTTAATTTTACGGGCGTTTG 73807 47 100.0 30 ............................................... TTTGTCGGCTGATATTGCCAAAGGAAATAA 73884 47 100.0 30 ............................................... TTTAAGGACTGGGTTGACAGCGACACTAAG 73961 47 100.0 30 ............................................... TTTATTGTAATATTAACCCTATTTAAATTA 74038 47 100.0 30 ............................................... CAAGTGCTTGTGCTTTTACAATGGCATTTT 74115 47 100.0 30 ............................................... ATAATCGTGTGGCGGTTAGATTCGTGATAA 74192 47 100.0 30 ............................................... TTGTTGGTTTTAATTCTGTTATCATTTTAT 74269 47 100.0 30 ............................................... TATGACGGAGCTCAGGCTGTTGTAGCTGAG 74346 47 100.0 30 ............................................... TATTTTGGCTTGGTTTTGCCCATATTTCCA 74423 47 100.0 30 ............................................... CTCCTACGCTACAAGTTTAACCAAAATAAA 74500 47 100.0 29 ............................................... TATCAGCAAACCAACCGACATCAAACCTA 74576 47 100.0 29 ............................................... AATTTTATAGCGCACATTTTCAACTTCAA 74652 47 100.0 30 ............................................... TTTCATCGCCTTTATTTCTTTGGCTCTCCG 74729 47 100.0 30 ............................................... TGTTGGTGTGGGGATTAACTTTAATTTATT 74806 47 100.0 30 ............................................... TACGATTTTTGAATTTCCAATGTGTGTCCA 74883 47 100.0 30 ............................................... TTTGAAATTTCTCAGCCCACCCTCTGAAAG 74960 47 100.0 30 ............................................... CATTGAGATGAAAAAGATGGCTAAAGTTAA 75037 47 100.0 30 ............................................... TGGGAGTGCTTTCAAGTCGTGATGATTGTA 75114 47 100.0 30 ............................................... TGTGGGGGCTTACAAGTCGTGATGATTGCA 75191 47 100.0 30 ............................................... TTGAGATAACCCCATTGACTACATAGTAAT 75268 47 100.0 30 ............................................... CGTTGCCACTAAACATAAAGCCCGTTTTCG 75345 47 100.0 29 ............................................... TTGTTTGCCACATTATTTGCCACATTTTT 75421 47 100.0 29 ............................................... TTCAAACAATGGAATATCCATTTTGTAAC 75497 47 100.0 30 ............................................... TATTATTTACACTACAAATGTAAGTATAAA 75574 47 100.0 30 ............................................... CAAAGAGGGGTTGGAACTATTTGGGTTATA 75651 47 100.0 30 ............................................... TGCGAAACATTCAAATAAGGAAAGCGATTA 75728 47 100.0 30 ............................................... TAAACAAAAGTGTTTATATTTGCATTATTA 75805 47 100.0 30 ............................................... TTCTCCTTTGTTAATGGGTTGTGTATGTGC 75882 47 89.4 0 .........................G..C......G.A...C..... | ========== ====== ====== ====== =============================================== ============================== ================== 41 47 99.7 30 CTTGTAACTAATCCTACAAAAATAATAATTTGAAACCTAATTACAAC # Left flank : AGAAGGCACTAGAAGAAAAATCGCTTATCCTGAATTTTGCTAAACCTATGGAAGAACTTTTCACTCGCTTAAACCAATATCGCTCTATGTGGATTCTTGTATCATTTGACCTGCCTACGGAAACCAAGCTCGACCGTAAAAGAGCTAGCAAATTTAGAAAACAATTGCTAGAAGATGGATTCTCTATGTTTCAATTTTCGATTTATATGCGATTCTGCTCAAGCCGAGAAAACACAGAAGTGCATATAAAGCGAGTAAAAGACATTTTACCCAAACATGGGCGTGTAGCCATTTTTAGAATCACCGACAAACAATTCGGTATGACAGAAATATTCCATAGTACCAAAGAGGTGGAAAAACCACCCATGTACCAGCAATTGGAACTTTTCTAAAATTAAAAAAATCATCAAAAATTTATTTCAAATAAAAAAAGGTTGCAGATTTCTACAATCCTAGCAACCTTTTCAACTTTTTGATTTACAGAAAGAAACAAGGAGTAT # Right flank : CGATAGTGTTTCTGTAAAAAACAAAAAACGAGCGGCTTCTGAATTACAAGAAAGTTTTAAGAAGTTCGAAAAATTGGAATTTGTCATTTTAATTGCCAATGATAAGATTTGGAGAATTGACAGAGTTACTGCTTTAATGACTCCATCAAATGACTTTAAAATAAAATTTGCACAATTTATTGATAAAAAATAAACTTGGGCAAGTAGATTGCCTACTTGCCCGCATTCATCTGCGGATTGGTTTGCACCGCTCCGACTTGTCTTGCAAGTATACAAAAACTAAACCAAATAATAAACAAATGAATAGAAATTTAGAGCAGGTGATGCGTGCCATAGAACAAAGAACGCATCAATTTTTAGATGATTTGCCAATCATAATAGCAAACGAGGCTTTGCTTTTCGCCAAAGAAAATTTTGACCAGCAAAGTTGGCAAGGAAGCAGCGTAGAGCCTTGGGCTCCGAGAAAAGACAAAGAAAATGAAAGGAGTTTCCTTGTCAAT # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTGTAACTAATCCTACAAAAATAATAATTTGAAACCTAATTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.60%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-2.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 1 20803-21350 **** Predicted by CRISPRDetect 2.4 *** >NZ_RJJJ01000008.1 Ornithobacterium rhinotracheale strain LMG 18856 NODE_8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 20803 37 100.0 34 ..................................... AATTTTTCATTTTGATATATTTTTTTTGTTTAAA 20874 37 100.0 35 ..................................... GCTTTTGATGAATCATAAAAGTAGGAAATGAAACC 20946 37 100.0 36 ..................................... TTTTAATATCTTCCATATCTTATTAAATTTATTTGT 21019 37 100.0 37 ..................................... TACTTCTCAATGAGACACTCTCAAGTTCAAATTCGTT 21093 37 100.0 36 ..................................... TAGTCATACATACTACTATCATGATGATAAATATCA 21166 37 100.0 38 ..................................... CTAATAAGAGATGTGGATAATTTTCGCCCCTTTCTACT 21241 37 100.0 36 ..................................... TTATTTCATCAATTTTTTTCATTCAAAAGTAAATTT 21314 37 91.9 0 ................................TT..A | ========== ====== ====== ====== ===================================== ====================================== ================== 8 37 99.0 36 CCCTTAGACCATATTCCATTAAAACAAGGATTAAGAC # Left flank : TGGCAGAGTGGTCGAATGCGGCGGTCTTGAAAACCGTTGAGGGTAACACCTCCGGGGGTTCGAATCCCTCTCTCTCCGCAAAAATCCCTGTAAGTGGCTCACTTGCAGGGATTTACTTTTTTAGGTGCTCTCGTGATAGTTTTTTATTTATTAGTTTGAATTTTTGGAATTTTATGATGAAGCTTTAGTGAAAGGGGTGGGATTTAAATTTTGTTGAGCAGTATAGTTGAATAATATTAAGTTGTAGGTGTTTTTTTATTTCGAAATTAATTAAAAAAAAAGAAAAAATTTTTTTAAAATCGGCAGAAATTATTATATTTGGGCATCTGTAAAAGCATAAAAAACATCTGACTAAAATCAGAAAAATAGCTCTTTGACATATAGAAAAACTTTGTACCTTTGCACCCCTTTTCAAAAAGGGTGTTTTTCGGGGTATTTTTGAAGAAAAAAAGTTATCAACAGGCTAAGTAATTAAAAGTCAATGTCGAGGAGAGCGAACT # Right flank : AAAAGGTTTTAGCAAAATAAAAACGACAAACCCGATTGACGGATTTGTCGTTTTTTTATTCTCTTACATTAAAAAGAAATCTTAATTATTAAATAATTTTACTAAATTTGAAATTGTTTTTTTAAGTTTTTACAATCGCTTAAAAAATCATTTTTTATGTATTTTAATAAGTAAAATTTATCAGTCAAAAACTTAAAACAAACATTACCATTTTGTAATTAATATTGAGAAATAGATTATGGAAGAAAGTAAGATAGAATTAAAATCTGTAAGTGATTTAATGGGTATGAATTTCACAATACCTGCTTACCAGCGTGGATGTAAATCGTCAGCAAAAAGTTTACCAGTTTAGGTTAAAAATAGTATAGTTAAAAAAAAGAAAAAACTAGAAATAACGATTGATGATATTTTAACTATAAATAGAATAGTGAAGAACGGATTGATTAATTTATAGAATGAATTTAAACCACCTATCATTTTATTGATAGGTGGTTATTCAA # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCTTAGACCATATTCCATTAAAACAAGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.00,-2.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA //