Array 1 6381-5421 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACTIX010000004.1 Listeria welshimeri strain FSL W9-0665 NODE_4_length_231595_cov_151.637428, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 6380 36 100.0 30 .................................... GCCAAAAACATTCAAAGTTAGACCACTGAA 6314 36 100.0 30 .................................... TTCTCATCTATAATCACATGATGATATAGC 6248 36 100.0 30 .................................... GAACGATACACTGTTGCGGGTAACATGCAA 6182 36 100.0 30 .................................... TATGAATATAGCGCTTTATGCGTATCAGAA 6116 36 100.0 30 .................................... CATAGAGACAATGACATTCAATTTGAGAAA 6050 36 100.0 30 .................................... AGCATTTGTGAAGCATTTGAAAGCAACACG 5984 36 100.0 30 .................................... TACATGTATCCAATGGACCACAGCCAATTC 5918 36 100.0 30 .................................... AGGAAATGAGAAATATATATTTACAGACCT 5852 36 100.0 30 .................................... ACAGAAGTTATCTATGACTTTGATAACTCA 5786 36 100.0 30 .................................... TGGAATTAAGGCAACTTTTGAAGCTCAAGT 5720 36 100.0 30 .................................... TAATTGCGATGCAACACTACTTATTGCAGT 5654 36 100.0 30 .................................... TTAGCAGGTGGTGCAGATGTTCAGGCCGCA 5588 36 100.0 30 .................................... GTGGCAACCAAAGCCCTAACCTCACCGTTA 5522 36 100.0 27 .................................... GAATATTCTCCCCCATCGCTAACAGGG 5459 36 83.3 0 ............CA.....C.....A.A.......G | C,A,T [5424,5427,5432] ========== ====== ====== ====== ==================================== ============================== ================== 15 36 98.9 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAACTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACGGTATATCTCTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTTCGCAAGTTACTTTAGATTCTGATTATTTTTTACACGTAGAAAATAGTGTATAAGGTAACCGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : ATAAAATGCATCGCAATTACAAAACATGGTTAAATTTAAAAAGGAGTTAGGTATCTATATGACACAGTATCACTATCTTACTTCGAAGTCGCTCTTAGAAAATGATGGGGAAAAGTTTCCTCGTCTTTATATTAGACTTCTTAAATTTGAATTTTGATATGAATGTTGACCAAGACACTAATGAATTGTTTTTCTATTCAATTGATTTGAACTCAGCTTGTAAATTTCAACTTGCTGTAAGTAAAGGGAACCTGCCGCTGAAAGGTAATTGGCAAAAAAATTGTTACGAGACTTAAAATTTAAAAATCTTGTATGATTATATTCTAAATACAAGTAAAGATAATGAAACGATTGAACTATATACTGCTTGAAACAGCGAGGAGGATTTCCTGTTTTTGAATAAAACAGAACTGCTGATCTAGAATTTAACTATCGAAAATCTAATTTTAAATGACAGAGAGCTATTAATAATTAGAAATGAAAACCGATATAACTTTTAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 4864-3907 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACTIX010000017.1 Listeria welshimeri strain FSL W9-0665 NODE_17_length_24522_cov_121.766701, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================================ ================== 4863 29 100.0 36 ............................. GGAACAATTAGACATTACTATAGATAAGATTAGACA 4798 29 100.0 35 ............................. TGCGCAGTTTACGTTAAGATTTGAAGTTTTCAAAG 4734 29 100.0 36 ............................. CCTAAAAAATAATCTTTTACTTTTTCATACCAATTT 4669 29 100.0 37 ............................. TCAATTCGTTTAATTCGGTTATTGAATAGCGAAGACC 4603 29 100.0 36 ............................. AGTTAAGAAAACATCTTCTTTATTGGAAGACTGTGC 4538 29 100.0 34 ............................. TGATTCTAAGTATTTACCTTCTTCAATATATAAA 4475 29 96.6 35 ....................G........ GTAGTTCTGGCAGTTCCACACCTGAAAATCCAGTG 4411 29 100.0 60 ............................. ACAAGAGGGAAATACTTAGGCATGAAAATTACGTAAGGTTTTAACTACTTATTACGAAAG 4322 29 96.6 34 ................A............ TTTGTATTCAGTCTAACTTGCAGGGCGGGATAAG 4259 29 100.0 35 ............................. ACAGAATCAACTTGGTGTATTTCGCCCCTACGACC 4195 29 96.6 36 ...........C................. TTTGTACACTCTCCCTTTATTTTTATATTCATTCAC 4130 29 100.0 35 ............................. GTTTTTTTAACGAACTGTGATGGGTTCAAATTATC 4066 29 100.0 36 ............................. AAGTTATGTCTATTAAACCGCACATACGCAAAGCAT 4001 29 96.6 37 ..........T.................. TCTGTTCAAAGATAAATGCTGTAGAATGCTTCATTTC 3935 29 96.6 0 ................A............ | ========== ====== ====== ====== ============================= ============================================================ ================== 15 29 98.9 37 GTTTTAACTACTTATTGTGAAATGTAAAT # Left flank : ATTTAAAATTTGGTGGTGAATATATGTATGTAATTTTAATTTATGATATTTCAATCGAAAATGGTGGAGCGAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAGGGTGAAATAACACCTGCTCTTTTAGTGAAACTAAGAATGGAGTTAGATAAGTATATTCGAGATGACCAAGATTCAGTAATTGTATTTTCTAGTAGACAACAAAAGTGGCTAGAAAAAGAATTTTGGGGGTTAACGGATGAAAAAACTTCTAATTTCTTTTGATGTTCTCGATCTGTCGACCCTTAGTAGTGCGAAAAATAGTAGGGTTCGACAGATTGACGGAGATGACTGGGGGAGAATGATTTTAAAGGTTTTTAGTGAATATCCGAAGAAATAAGTTATAATTTTTATGCAATTTTTCAGAGGTCGACAAAAATAGTGCCCTGAGGTATGATGGGAGTAGGAGTAAAAAAGGGCGGG # Right flank : AAGGCAATGCTCGCATTGTCACCAGACTACCTAAACCAACAAAACCGCAACCAACGCCAAAACCGCCGGCAAGCCCTGTTTCACCAAAATCCCCTTAGAAGAAGTCAGCCCGCCAAACAGCGCCGCCACAACCACACAACTTAAAAAGAAAATCTGCACAGTTTCAGCCATCTCTGCTCCAGCGAAAAATAATCCCCACACAAGCCCTACCGCAAGAAATCCATTATAAAGCCCTTGATTCGCAAACAGCGTCTGGACTTTCTTATTCGCAAGTAGTTCCTTCTCTACACCGAACGTCCTCGATGCGAGTTTGGTATTTGCGAAAAACATTTCTAAAATCATAATATAAATATGTTCTATCATAACGATGAAAGTTAAAATAAATGCTAAAATGGTCATCTAAATCCCTCTTTTCTACTTCGAAGTATAGCATGAATTGTAAATTTTTCATGAAAATAAAGCTTGAAACGTTGACTTATTGGCGAAATCTCCGTAATATC # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTAACTACTTATTATGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.10] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //