Array 1 54324-53769 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABHJA010000007.1 Clostridium perfringens strain 4928STDY7387917, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 54323 30 100.0 35 .............................. TTGGATACATAAGCCATTTTTATCTTTACGCCATC 54258 30 100.0 36 .............................. TCAAGTGTGATTGAAATCTTAACTTTAGCCACTAAT 54192 30 100.0 35 .............................. GCAGCACCTTTTTGTAGAACTTCTCTACTAGCTAA 54127 30 100.0 34 .............................. ATTCTGTAATGAGCATAGGGAATTTAAGATGCAA 54063 30 100.0 36 .............................. GATAAGTGCATGAAGTAGTCATATAAATTCTCATAG 53997 30 100.0 36 .............................. GAAAATGTTGGTTGGAAAGAACTAAAACGCTACCCT 53931 30 100.0 36 .............................. TGGAGGAAAACTTACACGAGGAGGTAATTTACGAAA 53865 30 93.3 37 .....................G.C...... TGCATAAGTTAATAGGCATAAATTGGAATTTTATAAG 53798 30 86.7 0 C........G.....T.A............ | ========== ====== ====== ====== ============================== ===================================== ================== 9 30 97.8 36 GTTGAATATCAACAAGAGTTGTATTTAAAT # Left flank : GGAAAAAGAGATTGCAACTATAAATAAACAAACTAATAGAAAGAGAGGAATAATTTAAGGATATGATTTATGTCATATCCTTATTTTTATTGGTTTTAAGTAAGATAGTTAATTACTTTAGTTTTTCTTATATAACATAGTAGAAAAAAACATTTCAAATGATTATAAGAAAATACTATATGAATAAAAATTAACAAAAGGATAATAATATAAAGAGGTTCTTTTTTATTTAAACAAGATGCAATAAAATGGATGTTGCATTTGTATTGAAAAATATACATAATATGGTAAAATGATTTAAGAAATAAAGGTTGATTTACCAACCTAAAAGTGAGAAAGTGATGTTTAAATGTTTGGTAACATAATACTCTCACTAAACGCTCCAATATATTATCATTGGTAAAAAGCTAGTGCAAAATAGATATAAAACTAGGCGTGTGCTAGGATACAACTTAATATTTTAGTATCAATATAGAATGTGAAATGTGAATTTTACTAGT # Right flank : CAAATAATTTTTAATATAAATTAGACTCTATTTCAGTTAATAGAAAACTAGGAGGATATAAATTGACTACGAAAAGTATAAAATTGGCAATTGAATTTAGTAAAGAAAACTGTGTAGATAAAAAAAAATTTTTTGACAATATAAAAGATATACAATATAAAACTTGGAAAGCTAGTAATAGGGCTATAACATACTTATATTCAAACGATATGCAAAACTTAATTCAAAAAGATGTTGGTCTACCAAAACAAGAAGATAAAGATATATTCGGGAAAAGTTTTGGTGCTTGGATAGAAAATAAAATGAATGAAATTATAGATGGAGCCAATAGTGGGAATGTGGCTCAACAAAGAGCTTTTGTTATTAATAGATATAATCAAGATAAGAAAAATGGATTATTAGAAGGAAAAGTAACACTAACTCAGTTTAAAAGAAATATCCCTATTATAATTCACAACAAGTCATATAAAATTATTGAAACTAATAAGGGGTTAGGAGTA # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAATATCAACAAGAGTTGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.80,-1.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 1 35244-34295 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABHJA010000009.1 Clostridium perfringens strain 4928STDY7387917, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 35243 30 100.0 37 .............................. ACTATTGCAGATGAGGCAGTAAAGCAAATGGTTGCAG 35176 30 100.0 36 .............................. AGTTAAACCTGATGAAACTTGGTATTACAGAGCAAG 35110 30 100.0 36 .............................. AAAAAAATAAAAGATATAACATCACCAAACAGGCTG 35044 30 100.0 34 .............................. GAACTTGTTAAAAATGTTGAATCAGCTAAAACAG 34980 30 100.0 35 .............................. TCTAACGATTGGTAAAAGTCTCTAAATCTAACTAA 34915 30 100.0 36 .............................. ACATATGTTAAAAATCTATCCTTCATATAAGTATCA 34849 30 100.0 36 .............................. TACTAATGAAGTTGCTGTTGATTCTTCTAAGGTTTC 34783 30 100.0 34 .............................. CTTTCTCTATTTGCTAACATTTGTCTATTAACAA 34719 30 100.0 36 .............................. TGGTCTTAGTAATGTAAGCTCCTACGTTTTTAACAA 34653 30 100.0 36 .............................. CACGCTTGTATATTTCTTTCAGTAAGAATAGCACTA 34587 30 100.0 36 .............................. TTCTTAAAATAGGATTTAATGAATAAGCAGTGTTTG 34521 30 100.0 36 .............................. AATTGACTCATTCTTAAAGCAACTGCTTTCTTTTTA 34455 30 100.0 36 .............................. AAGGTATAATATTTTCCTCTCTCAGATTTTAGTATT 34389 30 100.0 35 .............................. TCCCAAGCAAAAACGCAAGGTTTATCATACTCTTC 34324 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 15 30 100.0 36 ATTGAACCTTAACATGATATGTATTTAAAT # Left flank : TGTAAGATATGAAAAGTAAAATGAATTATAATTATGCTTTTGTATTTTATGATGTAAATGAAAAGAGGGTAAATAGGGTGTTTAAAGTTTGTAAGAAGTATTTATCTCATTTTCAAAAATCAGTTTTTAGGGGAGAAATAACCCCTGCTAATCTTATAAACTTAAGAAAGGATTTAAATAAAGTAATAGAAAAAGATGAAGACTTCATATGTATTGTTAAATTATTAAACGGAAATGTATTTGGAGAAGAAGTGCTAGGAATTCAAGAAGTAATTAACGGAGAAACACTGATACTTTAATAATTAATTCAAAATAACATATAATTTTACCAGTGATTTAAGTGGAAAAAGTTTGTGAAATCCTTGAAATAACTAAGTTTTAGGTTGATTTTAGATACCCTCTTTAATTCTTAATAAAACACTGGTAAAATCATAGTATAAGTATTGAAATAACTAGATTAAGATATATTTATTAAATTTAAAAATGGCTATTTTAAAAGT # Right flank : CATATGTAATTTCTTTAGGGAGTGAAGAGACCAGTGTTCGTCGTTTAAATTTAGCACAAGCTTTTAATCCTATTGGTTCATTAGCTGGTATTATAATGGCTAAATATATAATACTAGGGAATTTACATCCAGCAACTTATGAAGAGAGAGTTGCTATGGGATCAGAGGCCTTAAGTAAAATACAAAATAATGAATTAATATGGGTATGTGTACCATATGTTAGTTTAGTAGTTATAGCTATAATAATTTGGTGCTTCTTTAAGAAAAGTAAAGGTTCAGAAAAAGATGATTCAGGAGAACTTAATATAATTGAATCAATAAAGAAATTAGTAAAAATTCCACGTTATGCTTTTGGAGTAATCACACAATTTTTCTATGTTGGAGTTCAAATAGCTGTTTGGACTTGGACTATAAAATATGTAATGGTTACTGTTGGTATAGATGAAGCATCTGCTGCTAAATATTATCTTATAGCTATGTTTGGATTTATTGCATGTCGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGAACCTTAACATGATATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [63.3-85.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA // Array 2 45392-48518 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABHJA010000009.1 Clostridium perfringens strain 4928STDY7387917, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 45392 30 100.0 36 .............................. TAAAGCCATTAGCAAGAAAGAGAAGGTGCTAAGCAA 45458 30 100.0 35 .............................. TATATTTTTGTGCAGTATAATAAATTCTTTTTCCA 45523 30 100.0 36 .............................. TGTTATTATGTAATTGTGGATAGGGTAAAGCGTTCA 45589 30 100.0 36 .............................. GCATAATGTAGAAAGTAATTTAAATATACTTTCAAA 45655 30 100.0 36 .............................. GTTAATCCAGTTTTATATAAGTTATTAATAAAATTT 45721 30 100.0 38 .............................. ATAAAGATGGCTGATACCATGGATGGTGGACTTGGTGG 45789 30 100.0 35 .............................. TTTTAATGTTTTTATACAACAATTTAATAACAATT 45854 30 100.0 36 .............................. TATGGAATTTAATATGCTTTTACCAAGACATGTTTA 45920 30 100.0 36 .............................. ATATTGCTTGTTCTTAAGATGTTATCCACAGACTGT 45986 30 100.0 36 .............................. AAATATATTCACTAAATAAGCTAAATTAAATCTATC 46052 30 100.0 36 .............................. AAATAAAAATAAGAGTATACCTACATTTACTTATGT 46118 30 100.0 37 .............................. TTAATGCTTATTTTGGTTTATATTCTACTTCAATTTA 46185 30 100.0 36 .............................. ATCATTATACTTTTCTCTTAATCTTAAAAGTTCCTC 46251 30 100.0 36 .............................. AACTTTCCTATTTAAACCTTGCAATTTCTCAACAGG 46317 30 100.0 36 .............................. GAATAAAATAATTATTCCTATGCTAGATGATAAAGG 46383 30 100.0 36 .............................. GGAATTTATAGAAAATAATAAATCTAAATCATCTTA 46449 30 100.0 35 .............................. TTGATAACTAATAACATATTGATACTAATAACATA 46514 30 100.0 34 .............................. CTTTCTCGACTTTATAAAAATCCCTCATTATATC 46578 30 100.0 35 .............................. GTAGAACCATTAGCTTTAAAATAAAGATCTCCACT 46643 30 100.0 35 .............................. GTTAAAGCTTTAGGTTGTACTACACAACAACAGTT 46708 30 100.0 36 .............................. AATGGCTCTGGAAGAACATACTCTCTTTGGCTACCT 46774 30 100.0 36 .............................. CTATAGTCGAACTGATGGTAAGGTTATTATTAGAGG 46840 30 100.0 36 .............................. CGGTAAATTTGACGGAAACGGATTAAATTATATATC 46906 30 100.0 36 .............................. CAAGAGATCTTTTGGTTTTAAATCTAAAGTTGTTGC 46972 30 100.0 36 .............................. TGTTACCTCCTTAAACTTAAATCTTTTATTATATAT 47038 30 100.0 36 .............................. AAGAATTAAGCAAATTACAAATTTCATGGGAAGAGT 47104 30 100.0 36 .............................. TAATAAATCATAAGTGACTTGACTAGCTTTTTCCTC 47170 30 100.0 36 .............................. TAATTTGAGCGACTTTGTAGTCGTACTTAATACATA 47236 30 100.0 35 .............................. TGAGGAAGAGGGATATGTAGACCATATTAAATCAA 47301 30 100.0 36 .............................. TCTGCATATAGTTCAAGTTTATTCATCTTATTATTT 47367 30 100.0 36 .............................. CTCCTTGTTTAGCAGCTTTAAAGTCAGCATCTTTTC 47433 30 100.0 36 .............................. ACAAAATTATTGGAGCATGTTTAATAATAATGTTCA 47499 30 100.0 37 .............................. TTAAGAAATACTTCGACGGTGAACTTGATGTAAGAAA 47566 30 100.0 36 .............................. AGTATTAGATATAACTTTATTTATATTATCTAAAGC 47632 30 100.0 36 .............................. GAAATTAAAAATAGGTTCAAAATATACAGTATCATG 47698 30 100.0 34 .............................. CACTACCAAGTACAAAATACAATCCTAGTAAGTT 47762 30 100.0 36 .............................. TTAAAATATATTTATTATGTATAATTGCTTACTAAA 47828 30 100.0 36 .............................. AAAGTTATTTGGAGGAGTTGAAAATAATGCAGACAA 47894 30 100.0 36 .............................. TGATGGCACACTATATTTTATTGATGGATTAATATT 47960 30 100.0 37 .............................. CTTCTGGTGTAGATTTTGAAAAACAATTCATATTAGC 48027 30 100.0 34 .............................. CAATCCAATCTTATCTAGCTGTTGGATCTGCACT 48091 30 100.0 37 .............................. GAAGTTAAAAGCACAGAATTTATAACCATATTTAGCA 48158 30 100.0 36 .............................. TTGAAATTTTAGATATTACTGTTAAATAGTTATGAG 48224 30 100.0 37 .............................. GAACAGAAAGGGTATTACCTAAATTAAAAAGAGAGCA 48291 30 100.0 35 .............................. AGTTCAATGTTATCATCATTTTCTCAAATAGCTAT 48356 30 100.0 37 .............................. CTAATTGTGGAACTATAGAAGGGGCGAAGCTTGAATT 48423 30 100.0 36 .............................. AGAGCTTTTACCCCCCTAGTTGCAAACATATAAATG 48489 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 48 30 100.0 36 ATTTAAATACATACCATGTTAAAGTTCAAT # Left flank : AAAATTGATTTTAAATAATTAATTGAAAACTCAAATAATTTAATTTATCTTTTGTTTAGTACATCTAATGTTATGGTTAAAAGATTATATGCATTAAATACATTTTTTAAATACTCCACGAGTTATTACAAAATTTATTATATAAATTAAATACATTTGATATTTTAATTATACCAATAAAAACTATTTCTACAAAATTTATCTTTTATTAATTTTATTTTCTTAGGCTATTTTTTCTTTTTATTTCATAAAAATATTACTTATTATAGATATAATTCTAATTTTTATCTGTAAATTTTATAAATTAAGTAATTATTTTATAAATTTATATATTCTGGTAATATTAATTATTTAATAAAATATTAGTTAATAATATAAATATTTTAATCAACTTAGAAACATAGCAATATACCTATTCCAATAATTTAATATTTAAAGTCCTTATATAAAAATATATATATCAATTTTATTCATAAAATATATATTTTGCGAAGTTATTT # Right flank : TGCTTGTAAAATAGCCATTTCTTTTTCTTGATATTTATCTTTAAGTTAGTTATTTCAACACTTCTCTTATTATTTTACCAGTGTTTCATTTTAATTTAAAGCACCAATATAAAATCAACTTGTAATCTAGTTATTTCAAGGTCTGAAAGGTGATTTTATATGATTTTAGGCTGGTAAAATTTTATTTGTGTATTTATAGATGTTTCTAAGAATGCATTAATTAAACACTAAAATTTACATATTCAGTAAACTTCAAATTTTTATCAGTGAATTGATTTAGCCCTTATACTATGCTAAAATTAACTTATAATTTTGAATTTGTTAATTAAAACTTAATAATATAAAGTTTTCTAGGGTTCCGTAGCTTTTTAGTTAGTCTGGTCCAAGAGAAAACGCACAGATAAACTGTGAACACGGAAGGATAAAAGCCTGGGAGATATTTTTATAATATTTCTCTCGCTTTTTTATTTTAAAGGAGGTATATTGTTATGAAAAAGTTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAAATACATACCATGTTAAAGTTCAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [88.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA //