Array 1 2696509-2697076 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSDJ01000001.1 Rahnella variigena strain CIP 105588 Rvar_contig000001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 2696509 28 100.0 32 ............................ GCCGTCTGCGTTCCATTAACGTCGATGAGTTT 2696569 28 100.0 32 ............................ ATACCCCGGCGGCAGTCCCATCGGGATTGTAA 2696629 28 100.0 32 ............................ TTCATGACCCGCACTGACATGCAATCCTTCGG 2696689 28 100.0 32 ............................ AGACACAGACTTACAACGCCCGGGCGCTGAGC 2696749 28 100.0 32 ............................ TTCTATGCTCGTTTCAGTCACCATCCGAGCTG 2696809 28 100.0 32 ............................ GTCTGACTGTAATACCAGAGGGCGACGAACCC 2696869 28 100.0 32 ............................ CATACTTAATGTAGATCCGTTTTCGTCTCTCA 2696929 28 100.0 32 ............................ GCTGCAAGATACTGATCGACTTCAGGCCCTTT 2696989 28 100.0 32 ............................ GTGGTGGCGATTCAGGCAAGGTTTGCAGATCG 2697049 28 75.0 0 ...........C.........CGC.TGC | ========== ====== ====== ====== ============================ ================================ ================== 10 28 97.5 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GCATTTTGAAAATTGAACCGGCGGCCGATGGTTCGGCGTATCAGGATTACGTGCTGACCGAAAAGGGGCTGGCGCTGCAACCGGTGCTGGTCGCGCTGGGGCAGTGGGGAAGTGAATACCTGTTTGAGGAAGGCGAAGCCTGTACGCAGCTTGTGGACAATGAAAACGGCCAGCCACTGCGCAAACTGGAAATCCGAGCGCAGGACGGACGGGTGCTGGAGAGCCGGGATATTACGGCGATCATTCCTGAAATCTGATACAGAATTCGGGCAACTCCCTCCATTTCGCACGGAAAAGGGCAAATCTCGATCTGCTCCCTCACCTGCGAAGGGGAGGGCTGGGGTGGGGTATTAATGGCATTTCAGTCATAACCCTTTTTTTCGAGCTGTCTCTAACTCTTTGATTTTAATGAATCACACGAGCCACACAAAAAAGAGGGTTTTTTTGGCAAAACAGGGATAATCTCTTGCAGTTCAAAGCATAAACATTAAAACTCAACT # Right flank : CAACTCACTGCAAACCATAAAAACTCTCTGGAAGCAGTATCTCATCCCAGCATTTTGCCCATTTTCTATGTGTGGATATCCAGTTATTGTCTGCTCGCTGCGGCAAAATCCGCAGTCGGGTGTAGGAACCTGAACCCTCATGGCGGAAGTTTTAATTTCGCCATCGCTTTGTATTACCAGAAAATAACAATTTATTACCGTATATTGTTTTGGTAACTCGGGTGGGGCAGCTTTAGGGCTGGTCGGAAAGGGTAACCGATATTCCTACCCCCGCCTGAGTTACCACCTTAGCGCAGGAACTTAAGTGGTAGCGTGATACGCAATCTAATATTAGGTTCTGTTCAAATGGATATTACTCTTACAAACGAAACATCCCCAGATTCATGGACGCTCACCGATCGCTGTCGTTTGCTGCATGAACAAAGACTGGCATCAGGCTGACATTATTGCGGCAATAAAAAAGAAGGGCACCACGATGGCGGCGGTTTCACGCCGCGCTG # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 2750155-2750724 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSDJ01000001.1 Rahnella variigena strain CIP 105588 Rvar_contig000001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 2750155 28 100.0 32 ............................ ATCAGGGTGTGAACGTGATGCAGGAATTTGCT 2750215 28 100.0 32 ............................ AGAGGGACTGAGCCGCGAAGAAACCATGGAGT 2750275 28 100.0 32 ............................ AACCTCACGCACGAACCAGATGGCCGTAGAGT 2750335 28 100.0 32 ............................ AGATTGACCATGCGTAAGTAACACCAGCAATA 2750395 28 100.0 32 ............................ CGAACGAGTCCAAAGATGCTCGGTTCCTTCGC 2750455 28 100.0 32 ............................ TAATGATTCATACCAGTCAAATCCATCCAGAT 2750515 28 100.0 32 ............................ ATCACAGCAGCTGACGTTAAAAAAACAGTGCG 2750575 28 100.0 32 ............................ GCTCTCAGCGCCGTTTTAAGTAGAGTTGAAAG 2750635 28 100.0 32 ............................ GATCACCGCATCGCCGTAACCAAGGATTAATT 2750695 27 92.9 0 .......................-.C.. | GCC [2750714] ========== ====== ====== ====== ============================ ================================ ================== 10 28 99.3 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GTGACGAAAATTTAAGTCTTTAAAGTCAAGGTCGTGGGCTCGCCGCCCACACTGGCCCAGAGACCCGCAGTCGCGCGGGCCTCTGGACTCCACGCTCTTTTCACTGCGCGCTATCGCAGGTATGACGGACATGTTCTGTCACCGCCGCGTGTGGCGCAAAATCTTGCCGCGTTGCGGTGCCTTCTCTCGGTCCTGAAGCCTACGGTCTTCAGGCCGCTCCGTTCAGCAAGATTTTTAATCACGCCATTCCCGATCGAATAAAACCTTCGTTCTGATTCTTTCCCAAAATCCAATGCGGAAGGGTGTTGTCTTGCTCCTTCCCCTGCGAAGGGGAAGGCCGGGATGGGGTATTAATGGCATTTCCGAACTGACCCTTTTTTTTGCGCCTCCGCTAACTCATTGATTTAAAATACTCACTAAACCTCTCAAAAAAAGAGGGTATTTCTCCCCAAACAGGGATAATCTTTTGCACTTCAATGCGTAACCCTGAAAACCCAACT # Right flank : ACTTACTGCAAACGATAAAACTCCTTGGAAGCAGTATCTCATCTCCGCGATTTGCCCATTTTTAATGTGTGGATATCCAGTTATTGTCTGCTCGCTGCGGCAAAATCCGCAGTCGGGTGTAGGAACCTGATGTGCTAGATAGTGCATTTCACATGCGCTACGTTTTGTTTCATCATTGAAAGTGGATTTAAAACACTTCTGTTATTATCAATGGTGACTCAGACGAGGCAGCTTTCGGGCTGATCGAAAACTCCAGTACATCGATTCCTACCCTCGTCTGGGTTACCACCAAATGTAGGAATTTGGGTGGTAGCGCGTGATACGGCTCTCTGGAAATCAACAAATGACTATCACTAATAATTCTGAAACATCCCCCGATTCATGGACGCTCACCGATCGCTGCCGTTTGCTGGCGAATGCGCTGGTGAACCCGCAAAACAGAGGTTCGCAGGACAGACTTTGCATCATGCTGCAAAACGAGCTCGAATACCTTGAAGCGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [58.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 2753546-2753753 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSDJ01000001.1 Rahnella variigena strain CIP 105588 Rvar_contig000001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 2753546 28 100.0 32 ............................ GAGGACTTCAAACAGAAGTAATGGTGAAATGG 2753606 28 100.0 32 ............................ TCAAGGGGAAGCGACAGCAGTTGGCTCTCCTC 2753666 28 100.0 32 ............................ GGGCCGCCGGTGTTACATGTTCGCCATCATCC 2753726 28 92.9 0 .....T.....T................ | ========== ====== ====== ====== ============================ ================================ ================== 4 28 98.2 32 GTTCACTGCCGGACAGGCAGCTTAGAAA # Left flank : AAGAGTTAAAGGGACAGGTTCTTCGTAATCACTGCCACATGAACAAAATGCAAAGATTGAAAATCCTGATGCTTCTGCTGGCCAGTATTTCTCGAAATCAAAGTTAGCGGGATCTACTTTGAATTTATCAAAATACTCTTTCATGATGTCGTCACCTGTTTCACACGCCCACACATAATCGCCGGTAGAAAGACTTGTATTAATAGTGACAGGCCAGCGTTTTTTAGAAAAGAAACGGGGCTGATTAAAGCGTTCATTGTACCAGTCAATGATGTCCTCATTGCTTACCATAGGCGGTCTTTCTCATTGGCAATCGTGTTGTAGCGGTTCGTCTCTTTTTAGGCAATGTTAGCTTAATTATCCTCAGCTAACCCTCTTTTCTGAGATATCTCTAACACATTGATTTTAAATCTCCGAATCACCCATCAAAAAAAGAGGGTATTTCTCCCCAAACAGGGATAATCTTTTGCACTTCAAAGCGTAACCCTAAAAACCCAACT # Right flank : ACACAGGTAAATATCATTAAGCTTTTGAATTTACGGGAGTACGGGCATAGGCAAAGCCACTTGCGCGACCTCAGAGGGATCATTTACCGAAGAGACTGATTTAGCAACAGAATCTGTCGCAAATTATCTATAACCAGACTGACGCATCCGGGCAGTGACCCCGGACTTGTCCAACCGCTCACACACCAGGAGTAAACACCTGGCATTCAATAATGGAGATATATGAAAGCAATAATGACAGTAGACAAACTTGAATTACGCAATATTAAGTCAATACGAGATTCTGGAAAAATAGGACATAACTTTGATCTGGTCGCAAAGTTGAAAGTTCAGTCACGCTCTATGGGCGCATTTTCTGGCGAAGGTATTGATTGTCCAGATTTACAATGGATTGAAACAGTAGATTGGTACAAGTTAGATACTAATACAGACAAATGGATCCACGTAGGAACTAATCCTAATAATAAAGATTTATACAAAGCAAACCCAAAATCGCAAAC # Questionable array : NO Score: 5.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGGACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGGACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 4 2763631-2764737 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSDJ01000001.1 Rahnella variigena strain CIP 105588 Rvar_contig000001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 2763631 28 100.0 32 ............................ TGAAGAACGCCAGTCGCCAACTTGGTATTGAG 2763691 28 100.0 32 ............................ AGTCACAAAAATGTTGCCCAGGCACTTCAGTT 2763751 28 100.0 32 ............................ GCACTATCTATAAAGGGGGCCGCCTGCGTGAG 2763811 28 100.0 32 ............................ TCCAGAATATCGACAAAGCGCTGAACGCTGCG 2763871 28 100.0 32 ............................ GATATGAAAAGAACTCAGCGGGAAATTGATCA 2763931 28 100.0 32 ............................ CGCGTTCCCATCGATGGCGAGCTATTACCGCT 2763991 28 100.0 32 ............................ AGGACACGCCGATCGCTCTGCAAACACTGTCG 2764051 28 100.0 32 ............................ TGGAGCGCTACGGTCATCAGCCGCGGCGTTAT 2764111 28 100.0 32 ............................ TACTACGGCCTTTCATGTGACCACTGCGAGCT 2764171 28 100.0 32 ............................ ATTTTTAATAATTCATTGAGAACGTTATTTAA 2764231 28 100.0 32 ............................ GTGCTCTTTGAGGCGCTGAAAGAAAACGTACT 2764291 28 100.0 32 ............................ CTGAGTTTTACGTGGTTGAGAACGTGCCCGGA 2764351 28 100.0 32 ............................ TGTTTGGGATAGACAATTCACCGTGGTCAAGC 2764411 28 100.0 32 ............................ CTTCAGTAGAAGCGAAACCGGCAGGGTTTGAC 2764471 28 100.0 32 ............................ TTGAAGCGAAAATAGTAGATGTGAGTGGCGGG 2764531 28 100.0 32 ............................ ATTACATCATCCACCTGCTGTGAGGTTGGTGC 2764591 28 100.0 32 ............................ CGTCTACAGTAAAGGCACGGCGTTAGCCGTCG 2764651 28 92.9 32 ...........T.C.............. ACCCCACAGCCAGCCCATACAGAGCAGGTAAT 2764711 27 82.1 0 ...........T.C.....C..C.-... | ========== ====== ====== ====== ============================ ================================ ================== 19 28 98.7 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : CAAGCTCTGGTTCAGGTTTAAGGTCAAGGTCGTGGGTTCGCCGCCCACACTGGCCCAGAGACCCGCAGTCGCGCGGGCCTCTGGACTCCACGCTCTTTTCACTGCGCGCTGCCGCAGGCACGATGGACATGTTTCGCGGCTCCTGTGCGTGGCGCAAAATCTTGCCGCGTTGCGGTGCCTTCACTCGGTCCTGAAGCCTCCGGTCTTCAGGCCGCTCCGTTCAGCAAGATTTTTGATCACGCCAGTCCAGAACGAATAAAACCCTCGTTCTGATTATCTTGCAAAATCAGATGCTAAAGGGAGATCTGTCTTGCTCCTTCCCCTGCGAAGGGGAAGGTCGGGATGGGGTATTAATGGCATCTCAGAAATAACCCTCTTTTTGGGGCTGTTTCTAACTCATTGATTTTAATAGTGGGTAAAAGCTTGAGGAAAAAGAGGGTATTTCTGCCTAAACAGAGATAATCTTTTACAGTTCAATGCGTAAACTTGAAAACCTAAAT # Right flank : ATCGCAGGTCAATGCCGGTGGGCGCGTTCTGATGACTGAGAACATGCGTTGTAAAATTAATGGATAATAAAATTTGATTAAAGGATGCCTGCTGTTCATCATTATTAATGACAGCAGGCATTTATAAAAAATCATCAGGAGTTATTATTTCGTGCAATAAACTCTTGCTTCGCGAGGTGTGTATATTCCTAAAGTGACAATGCGCAGGAATACATCCATCCCTGATTCCTGAACTTCAGTACGAACAACTTTATTTGCGCTACCACAAATTTTTGCTGCGTCTATGGTATGTTCTTGTCCAATGCCATTAACGAAGAAAGCTTGTCTGGTGACATGAGCGGGTTGCTCTGCAATACCATCATTTAATTTGAATGTCTGTTGAGCACAGCCTGACAATGCAGTAACAGCAAGAACCGAAATAATAAATTTTTTCATGATAACTCATGTTGATAATAAAGAAGTGAAATCATATATTCTGGCCTGTTGATACTTTTACAAAT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //