Array 1 454218-455527 **** Predicted by CRISPRDetect 2.4 *** >NZ_QIBF01000002.1 Salmonella enterica subsp. enterica serovar Typhimurium strain 11447/15 2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 454218 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 454279 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 454340 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 454401 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 454462 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 454523 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 454584 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 454645 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 454706 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 454767 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 454828 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 454889 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 454950 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 455012 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 455073 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 455134 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 455195 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 455256 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 455317 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 455378 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 455439 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 455500 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 22 29 98.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 471659-473623 **** Predicted by CRISPRDetect 2.4 *** >NZ_QIBF01000002.1 Salmonella enterica subsp. enterica serovar Typhimurium strain 11447/15 2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 471659 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 471720 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 471781 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 471842 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 471903 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 471964 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 472025 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 472087 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 472148 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 472209 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 472270 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 472331 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 472392 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 472453 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 472514 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 472575 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 472636 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 472697 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 472758 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 472819 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 472880 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 472942 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 473045 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 473106 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 473167 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 473228 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 473289 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 473350 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 473411 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 473472 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 473533 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 473594 29 96.6 0 A............................ | A [473620] ========== ====== ====== ====== ============================= ========================================================================== ================== 32 29 99.6 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //