Array 1 1030061-1031553 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP075372.1 Salmonella enterica strain no75 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1030061 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 1030122 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 1030183 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 1030244 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 1030305 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 1030366 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 1030427 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 1030488 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 1030549 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 1030610 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 1030671 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 1030732 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 1030793 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 1030854 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 1030915 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 1030976 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 1031038 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 1031099 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 1031160 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 1031221 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 1031282 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 1031343 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 1031404 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 1031465 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 1031526 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1047685-1049527 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP075372.1 Salmonella enterica strain no75 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 1047685 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 1047746 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 1047807 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 1047868 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 1047929 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 1047990 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 1048052 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 1048113 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 1048174 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 1048235 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 1048296 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 1048357 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 1048418 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 1048479 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 1048540 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 1048601 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 1048662 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 1048723 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 1048784 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 1048846 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 1048949 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 1049010 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 1049071 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 1049132 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 1049193 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 1049254 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 1049315 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 1049376 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 1049437 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 1049498 29 96.6 0 A............................ | A [1049524] ========== ====== ====== ====== ============================= ========================================================================== ================== 30 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //