Array 1 8792-9113 **** Predicted by CRISPRDetect 2.4 *** >NZ_KK236030.1 Staphylococcus aureus VET0459R adZKP-supercont1.3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 8792 36 100.0 35 .................................... CTTCTAAGACGCGATATGATTCTAATTGGTCTTCA 8863 36 100.0 38 .................................... GATATACTCCTTTACCATGTATTAATTCTGGACCACTA C [8878] 8938 36 100.0 33 .................................... CATATTCGATCGTGTATATCAAAACTTTATGCA 9007 36 91.7 37 ................................G.TC TCATCTTGATGATCCCAATTGGCTTGGTTAAAAAGAA 9080 34 66.7 0 A.......T--..T.......T..A.A.AA..T.T. | ========== ====== ====== ====== ==================================== ====================================== ================== 5 36 91.7 36 TTCGATAACTACCCCGTAGAAGAGGGGACGAGAACT # Left flank : GAATTAATATACAGACACCTATGTCTTTTAAATATCAGAGTAATTACATGATTTTTCCTGAGGTTAAACGTTTCTTTAGAAGTATTATGATACAATTTGATGCTTTTTTCGAAGAATATAAAATGTACGATAAAGAAACATTAGATTTTTTAGAAAAAAATATTAATATTGTTGACTATAAATTGAAAAGTACACGATTTAACTTAGAAAAAGTTAAAATCCCTTCATTTACGGGAGAAATAGTGTTTAAAATTAAAGGACCCTTACCTTTTCTACAACTAACTCATTTTTTATTGAAGTTTGGCGAATTTTCTGGATCAGGTATGAAAACAAGCTTAGGCATGGGGAAATATAGTATAATATAACTAGAGTATAGCTGAAATTTAGTTGTCAAAAAATGTGACATTCTGCACTTATAGTACAAGTGATTTGTCACTATTTTTGACAGTAAATTTTGCCTTTGAACTATTGATTTGATAGGCTTTAAAGAGCTATCTAAA # Right flank : TAAAAATATATTTGATTTGATAAAATATTCTGCAAAAAAGAGGAACAAAAAATCAAGATTTAAACTGTAATTCATTATTATTGAAATTAATCGACATTCAATTTCTAAATAAACAGAAACAAAAATAACTTTCATATAAATAATTTCTTTGCGATTAAGTTGGAATTAGAAATACTAAATACAAATAACAGCGAATGAAATGCATATTATTGAGGAATTGGATGTGTAGTGCAATTTCGAGAGTTACTACTTAAGAAAATAAAAAGAAGAAAACAAACAATAAGAATTAAATCTGAAGCAAGATATAAAAGCAAATATTTTTGATACAACCACATTAGTAAATACTTTATTAATTAGTATACGACTGAAAGCGAAGTAACAGCTAACAATGCTCCAGATATAGACATTAGTGTTACGAAAGAATAATATTACCATCTAGAAAATGTAATTTTTTAAAAATCTGAAGATAAAGTAGATTACTTTGTGAGTTTTCATGTTAA # Questionable array : NO Score: 2.65 # Score Detail : 1:0, 2:0, 3:0, 4:0.59, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTCGATAACTACCCCGTAGAAGAGGGGACGAGAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [12,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.80,-6.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [71.7-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 16328-16579 **** Predicted by CRISPRDetect 2.4 *** >NZ_KK236034.1 Staphylococcus aureus VET0459R adZKP-supercont1.7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= =============================== ================== 16328 25 76.0 31 ...T.A.C.C.T....C........ CATTGTCTGTAGAAATTGGGAATCCAATTTC T,A [16337,16344] 16386 25 100.0 31 ......................... CATTGTCTGTAGAAATTAGGAATCCAATTTC 16442 25 100.0 30 ......................... CATTGTCTGTAGAATTTCTTTTCGAAATTC 16497 25 92.0 31 ...A............C........ CACATTATTGTAAGCTGACTTACCGTCAGCT A [16512] 16554 25 88.0 0 ...A..............T..A... | T [16574] ========== ====== ====== ====== ========================= =============================== ================== 5 25 91.2 31 TCTGTGTTGGGGCCCCGCCAACTTG # Left flank : CTAAAATCAATGTTTGGTGGATATGATGAATTAATGGAACCTGTGTGTAACACATTTACTGCTAAGGAACCATTTAATCAACTTGGTGGTTATCCATATTTTGACCAAATAGATCCAAGAACGAACGATCAAGGACTGAAAATGTATGATAGAGTCTTACTGCAAATTGATTCTACAAGAGATGGTAATTCTTCGATAATATGGGGTGATTTAGGTATTGCCAATATCTTAGTAAAATCTACTGACCTTGAGGCTATGAAGTTTGATGATTACATGTATTCATGGGATTGCAGCTAAGAGAATCATAAAAATATATTACTTTAATAAGATGTAGTATTTATAGGTCAATCTAGGGAGTGGGACAGAAATGATAAAGAGCCACTAATGATTTATTATGTAGTGGTTCTTACACATTAGCCACAGCTAATGTGTACTTAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCAATAGAAAAAGTATT # Right flank : GAAAAATGCTTGTTATAGGTGTATTTTCTTTTGGTTAACTATTGGTAATATATCATTGTAGATTTTAGGATGTTGATTTATGGTTTAGCCTTTGTCTGTTTATGTAAAATGTCCCAGCTAGTCAAACATTGAGTTTGTAATTATTATATTAAGCTAGTTTAAATTTTTTGTGATTTATGTTTTATTCATACCAATTTTGTGAAATGATACAGTGACAGATGTTTATTGATTTTAAAGGGTGATGATGATGGCTATTGTAAATAAAGTGATAATTGTTGAAGGAAAATCTGATAAAAAAAGGGTGCAACAGGTTATTGCAGAACCAGTCAATATTATTTGTACTCATGGAACAATGAGTATAGATAAGTTTGATGATATGATAGAATCACTATATGATAAACAAGTTTTTGTATTAGCCGATTCTGATGACGAAGGAGATCGAATTAGAAATTGGTTTAAACGTTATTTGAGTGAAAGTGAACATATATTTATTGATAAAA # Questionable array : NO Score: 2.61 # Score Detail : 1:0, 2:0, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCTGTGTTGGGGCCCCGCCAACTTG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.70,-2.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.64 Confidence: LOW] # Array family : NA //