Array 1 147581-148088 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRBX01000026.1 Pseudomonas aeruginosa strain Pa1810 K31_S97_R1__paired__contig_26, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 147581 28 100.0 32 ............................ ATCACCGCCGCCAGTCCCACCGTTTCCGTCTC 147641 28 100.0 32 ............................ GCGAAGAAAAAGCCCGCCAGATAGGCCAGGAA 147701 28 100.0 32 ............................ TGGACGCGGGCGTCCTGGCTGATCAGGCTCCA 147761 28 100.0 32 ............................ CAGCGGGATCAGCGACCAGCCGATGGCCCGCA 147821 28 100.0 32 ............................ GTCGAGGCTGTCCAGCCGCAGCACGCTGCCGC 147881 28 100.0 32 ............................ ATGCCGCCGACCTGGTGCTGGTCGACACGGTG 147941 28 100.0 32 ............................ TTGACGACCAGCCAGAACCTGCGGCCGTTGGC 148001 28 100.0 32 ............................ GAGGAGTCCGAAGACTTGTCCGTGTCGTACCA 148061 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 9 28 100.0 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCAATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCGAGGCTCACCGCCCGTCCCGGTCCTCGCGAAACGGCCTCCAATTGCCCGAAACTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCAGGAAAAACTCGGTATTTCCTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCTA # Right flank : AGGAACGTCCCGTCTCAGTTTGGAACGCCCACGTTCACTGCCGTATAGGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [58.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 138981-139729 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRBX01000021.1 Pseudomonas aeruginosa strain Pa1810 K31_S97_R1__paired__contig_21, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 138981 28 100.0 32 ............................ TGCGTAGATGCCGCGATCATAGCGCGCCCTAC 139041 28 100.0 32 ............................ TTCGGTACTTCTGAACCATACGTCGCCGCATA 139101 28 100.0 32 ............................ AGTCATCGATGAACGACGAGCCGGTCAGTGCC 139161 28 100.0 32 ............................ AGAAGCTGGAGCGACGGCTGGCGGCAATTCGT 139221 28 100.0 32 ............................ CCGGACGTTCACGCTGGTGGTGAGACCATCCG 139281 28 100.0 32 ............................ TGGCTGTCGCTGCGCTGCTGGCCGCTGTGTAT 139341 28 100.0 32 ............................ GGCTGGTCCCAGAGCGGGTCGACGGCACGGTC 139401 28 100.0 32 ............................ GAACCGCGCGTTCATTGCTGAAGGCCATCGTC 139461 28 100.0 33 ............................ ACATCAGCGCCGCGGTAGCCGATGCCGATATCT 139522 28 100.0 32 ............................ ACCATCCCCGGCCACGGGTTGCCCGACACCTG 139582 28 96.4 32 ........T................... GTTCCATCCGGGTAGGTCACGTCCACGTCGTA 139642 28 100.0 32 ............................ TGGAGAGTGACCCGCTCAAGACCGAGGCCGAG 139702 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 13 28 99.7 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : CGTTCACTGCCGTGTAGGCAGCTAAGAAATTGATATGCCGGTAGAACGTCGGGCGAGACATGTTCACTGCCGTGTAGGCAGCTAAGAAATCGAACGCTGCTGAGCGCCGAACGCATAGATGGTTCACTGCCGTGTAGGCAGCTAAGAAAAGACCGAGGACGGCTCGAAAACTCGGATGATCGTTCACTGCCGTGTAGGCAGCTAAGAAATTCGACGGCCACGCCTCAGCCCGGCCCAGGCCGTTCACTGCCGTGTAGGCAGCTAAGAAATTATTGAAATCCTCAGCGGCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGTAGGCAGCTAAGAAATGGGTGTCCAACATCGACGGGTCGAACTGCTC # Right flank : TGATGCCGGACATGGGACGTTTCGCGGGAACCGTTCACTGCCGTGTAGGCA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 62486-62278 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRBX01000012.1 Pseudomonas aeruginosa strain Pa1810 K31_S97_R1__paired__contig_12, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 62485 28 100.0 32 ............................ TGGAGAAAAGCAATGCGAGTGGTGCGAGGCCA 62425 28 96.4 32 ....................T....... AGACAATCCGGACCTGCCGCCCAGGACGATCT 62365 28 100.0 32 ............................ TGCAGCGACTGCACCTTGGCTTGCTGCCGGTC 62305 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 4 28 99.1 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : TATAGGCAGCTAAGAAATCGAGCAGCGGCCCGAGGAGTCCGAAGACTT # Right flank : CTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATGCACGAAGTGAGGCTTGCCCTCCGAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGGCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGACCAAGGCAGGCACAAAGAACAGCTTGACCACCAAACATGACGCCCGCTCAAGCGCTAAGCAACAGCGTCCCCCCTCACTGCCGTGTAGCTAAGAAGTCGCGAGCGATATAGTCCCGTAGGGCGA # Questionable array : NO Score: 5.81 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.87 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 38362-39766 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRBX01000067.1 Pseudomonas aeruginosa strain Pa1810 K31_S97_R1__paired__contig_67, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 38362 28 100.0 32 ............................ AGTGGGCCGAAATCGGCCGATGAGTTCATCGG 38422 28 100.0 32 ............................ GCCCAGGACGATCTACTACTACGGCATCCCGG 38482 28 100.0 32 ............................ TGTCGCAGATCGATCGCGAGGACGCCGATGGC 38542 28 100.0 32 ............................ AGCAGCAGATCATCGACAACGCCCGCGCTTCT 38602 28 100.0 32 ............................ GAGAACGATTCCGTCTTGTTGGAGCTTTCTGT 38662 28 100.0 32 ............................ CGACGAGCAACTGCGCTTGCGCGTGCGTAACC 38722 28 100.0 32 ............................ GGAAGGCTGGCGCTCGAACGGATGTGTACAGG 38782 28 100.0 32 ............................ TCCGGATCACCAGGGCGACAGATGGCCACCTC 38842 28 100.0 33 ............................ CTCTGGCGGTAACCTTCCATGATCTGCGCAGCC 38903 28 100.0 32 ............................ TGCATGCACATCGGCGAACTGCTGACGTGCTT 38963 28 100.0 32 ............................ TGGCGCCGCCCGATTTCACGTAGCTGCTCGAT 39023 28 100.0 32 ............................ TGATATCCAGCTGCTCCAGGAACCACTGGCGG 39083 28 100.0 32 ............................ TGATTTCGAAGGCCGCGGGCGACTGATCCGGA 39143 28 100.0 32 ............................ TGGATCAAAGAACGCATTCTCGGCACGTCGAA 39203 28 100.0 32 ............................ TCCTTGCCGGGCGCGGCGGCGAGCAGTTCGCG 39263 28 100.0 28 ............................ GAGTGTGAGGCCGGGCAAACGGATTTGT 39319 28 100.0 32 ............................ TTGACGGCCAATGCCGGCTTCGACTTAGCTCG 39379 28 100.0 32 ............................ AGCCACTCGCGGGCCAGCTCGGGCGATAGCAC 39439 28 100.0 32 ............................ GTGTCGCCCAGCACCGTTCAGCGCTACTTCAT 39499 28 100.0 32 ............................ TCGATCCACACCCGCGAGGACGTGGCCACCGT 39559 28 100.0 32 ............................ AGCAATGGAAAGCAGCGATGTGACCCGACCCG 39619 28 100.0 32 ............................ TGCAGGTCATAGGCGTATTCGAAGGACAGGCT 39679 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTAGGGCGA 39739 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================= ================== 24 28 98.8 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTGGGGTGGATTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGTTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGGGCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATAAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGAAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGACGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGCTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //