Array 1 39447-41493 **** Predicted by CRISPRDetect 2.4 *** >NZ_VDZJ01000014.1 Neisseria sicca strain DE0367 NODE_14_length_56863_cov_98.653732, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================== ================== 39447 36 100.0 34 .................................... TTGGATGAATTGGACTAAGTCCTTTTGTAGTCCA 39517 36 100.0 32 .................................... TTACGGCGGTTTGATTGTTTGGCCGCCGAAAA 39585 36 100.0 33 .................................... CCTGCCAACTCCTGCACGCTGTCGCCGTTTTGC 39654 36 100.0 36 .................................... CCTTTTACTTTCTGCCATATCGGCTCCTACGCTGCG 39726 36 100.0 34 .................................... TTTCCCGTCCCGAACATCACGCGCCAAATCCAAA 39796 36 100.0 32 .................................... GCCGATTCGCTGTTGGTTGTCGCGCCTGACAA 39864 36 100.0 35 .................................... TTATAAGGCTTTTCTTGAGGTTTCGCCTTGCGGAT 39935 36 100.0 33 .................................... CAATACGAGTCAATATATCGACAGGTCGTTTTG 40004 36 100.0 33 .................................... TTATGGGCGTTTTGCGCTTGTACTGCCTTGTTC 40073 36 100.0 33 .................................... TGCCTGTCTATTTCATTTTACGCTGATGATGAG 40142 36 100.0 30 .................................... CTTGATAGCCGTCTTTAGTTTTTCGCATGA 40208 36 100.0 35 .................................... TAATGTTAGGTGAATCTATTCGTTCTTCAGATGAG 40279 36 100.0 33 .................................... CTACAACTTTGAAGAAATCATCAAATGTACGAC 40348 36 100.0 33 .................................... AGGTTTATCCAAAACATCACTTCGATACAGTCT 40417 36 100.0 33 .................................... TTTACGCTTAACCGATCTAAAAACCCGACTATA 40486 36 100.0 34 .................................... GCTTCTTCGGCTTCGCGCATGGCGGCTTGTCTGA 40556 36 100.0 33 .................................... CATTTTGATTCATCTTTCAATTTGAGTGATTTA 40625 36 100.0 33 .................................... TAAGACCCATGTCTTACTCCTTGTTAAGGTTAT 40694 36 100.0 33 .................................... TCTGATACTGCTTCCTTCAACCACTCCACTGTC 40763 36 100.0 33 .................................... CTCGCCGAACCAGCGTTCTACCGGCTCTTCGCT 40832 36 100.0 36 .................................... AAAATTGGTATCTATAAAGTCGATTATGTCAATTTG 40904 36 100.0 33 .................................... TTAATGTCAATAATTCACCCTCTGCAATTAATT 40973 36 100.0 32 .................................... TTGTAGAGCGTCTGGTGTTCATAGTCGACAAC 41041 36 100.0 33 .................................... ATAATATGATTTCCTTTTTGTAAAAATAAAAAT 41110 36 100.0 33 .................................... GCAGATTCAGGATTTAACTTGCTGAGTTTATCA 41179 36 97.2 33 .........................A.......... ATCTGAAGGCATTTCAAGTGATGGCTCATCAGA 41248 36 100.0 34 .................................... GAATGGCGCTTTGCAAAAAGCCTTCCCAGAGTTG 41318 36 100.0 34 .................................... CCCAGAAACCTTCTCGGCTTCCTCGAGGGATACC 41388 36 100.0 34 .................................... CTCTATCCATTTTTGCTTGTAAAATAGTGATGTC 41458 36 80.6 0 .........A.....T...........A..G..AGT | ========== ====== ====== ====== ==================================== ==================================== ================== 30 36 99.3 33 ATTAAAAACGAAGCCCCATCACTAGGGGATTAAGAC # Left flank : CCCTGCCCGCATCCTATCCCGCCGATATAGAAATCACCTTCCAAACCCCCTTGCGCCTGCAGCAGCAAAACAGCGTATTAGGCATCAACCGCCTTACCGCCGAAATCCTGCTCAAACAACTGGTCAGGCGCACATCCACACTCGCCACCCTATACTGGCAGAGCTTGGAAGTCGATTACACAAGCCTGATGCAGGCCGCGGCACACATCAAAAGCAGCCATCAACTGCAATGGCTGGACTGGAGCCGCTACTCAAACCGCCAGCAACAGCAAATCAACTTGGGCGGAGCCGTAGGCACTTGGCAATTTCAAGACTTACCGCTACCATTCAGCCAGTTGCTCCACATCGGACAATGGCTGCACATAGGCAAAGAAACCGTATTCGGCTACGGACGTTACAAGATAAAAGAGGTTAATCCATGTTTAACTTTGTAAACCTTAAGAGTATTGGAAACCACATTTTCAACTCATTGACTTTAAAAGGAGAAATGCAGACCTGCA # Right flank : TTTCAGACGACCTTGTGTGATTGGAGGTCGTCTGAAAGTTTGAAAATGACTGTTTTGTCAGCCTGTCCGAAATTCGATGGATGGGCATTATTTTGTGTCTTTGGTTATGTCGGATGCTGTCGGTATGGGTATTATTTGTAAGTCCATGCCGCTCCAGACGATGCCTTCGGGCAGGGGGCGTTTGCCAAAATGGATTATGGGTGTGTGTTCGGATAAGACGTATATCCTTAAGTTGTCTTCTTTGGAGTGTATTTGTTGAATCAGGTCTTGATAACAGGCCTGGTAATCGGTTTCGTTGCCTTTGAGCAGGAAAACGCTGTTTTGCAGGGGGAGGGCGTGGTTGCACAGGATGCGGTAAATTTTTTGCAGGCGTTTGGGACAGCTGATGTCGTATGCAATCAGCCATTTCATTGTATCTGTCCCCAGTGTGTTTCAGTATAGTCAAAATCAGCCGGATCTTGTCTGCCGTGATGGCACAACTCTGCCAGTAGCCGACGTGA # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAAAAACGAAGCCCCATCACTAGGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-6.70,-6.50] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 34879-28657 **** Predicted by CRISPRDetect 2.4 *** >NZ_VDZJ01000011.1 Neisseria sicca strain DE0367 NODE_11_length_83805_cov_92.031275, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 34878 33 97.0 32 A................................ TTTGATTCAACGTTCCAACATCAAACAAATCC 34813 33 100.0 36 ................................. TCTAATTAACGGGTTCTATTATGAAAAAGTTTCTGA 34744 33 97.0 33 A................................ AATCCCAAAAACAACCCTAAATACATTGGCTAT 34678 33 97.0 35 A................................ TTGGGATTAGCGTGAGCGATGTTTTGAAGTATGAG 34610 33 100.0 32 ................................. AATTCGCCGAACATCACAAAAATTTCGGTCTC 34545 33 100.0 36 ................................. TATCAGACCCAATATGGCCGCCTGACGACACAAAAA 34476 33 100.0 34 ................................. ATCCGAATGCAGGTAAAGCTTTTCTTGGTACCCA 34409 33 97.0 34 T................................ TTTGATTTGAGTTTGAATAGCTTGCCCGTAGGCT 34342 33 97.0 34 T................................ TATCAAGCGCGGAGGCGCAATCGGGCTGGGTGGA 34275 33 100.0 32 ................................. ATCTTCGATTTCGTGGTTAATTGCAATTACTT 34210 33 100.0 34 ................................. AATTTTCATGTTTTCGTTGGCCGGCATATCCAAA 34143 33 97.0 34 C................................ CTTCCCAAAAATGGCCGTAAGCACAGTGCATTGA 34076 33 97.0 34 A................................ CACATAGCGATGTCGCCGGGCTTTGGGGCGTCCG 34009 33 97.0 34 T................................ AATAAAACCCTCTCTTTGTGTAACAAAGGTTTCG 33942 33 100.0 33 ................................. TGCATCTACTGTAACGTTTCGTCCTTTTGCGGG 33876 33 100.0 33 ................................. ATGATGGCTGCGGCGGCGGTGGGATTTTGGGCA 33810 33 100.0 35 ................................. AGCTCTTTTGCTTTATCAATGATGCGCTTGGCGAT 33742 33 97.0 32 T................................ GGCTATATCGGTCAAACAAAAGACCTGTATTT 33677 33 97.0 34 C................................ GTCAATACCTATTTCCCGCATTATGTCAGGTCGT 33610 33 97.0 32 C................................ AGTCATTACGACGTTTGGTTGTATCAGCACAG 33545 33 97.0 34 C................................ ATCCTGCCGCCTTGCCGTATAAATCGCCAACCAC 33478 33 97.0 34 A................................ CACGTTAAAGACACCATTGCCAATAATCACCAAC 33411 33 100.0 32 ................................. CCATCTTTTTGCAAGTGCATAATCAGATCTGA 33346 33 97.0 34 T................................ CCTGAATGCTCTGTTGTCGAACAGTTTTCAAGCG 33279 33 100.0 34 ................................. CTTCTGCGACACCTTGTCCGGCAAAGCCAACACC 33212 33 100.0 35 ................................. AATTCCGACACGCTGGGTCGCAAATGATGCCGATA 33144 33 97.0 33 C................................ TTCATAATCCGCTTGGATGATATCGTCGCCGGA 33078 33 100.0 34 ................................. TCTTCACCCGCATCGGAACCCGTGTAATGCGAGA 33011 33 97.0 33 A................................ CAACATACTCAACCTTATAATAGCAAGTTGGAA 32945 33 97.0 34 C................................ AAATCAGACCATCAGGTGATACATACGACAATCC 32878 33 100.0 34 ................................. TTTAAATAGCCGTTGGAAATACCCGTCAAGTTCA 32811 33 100.0 35 ................................. TAACGGTGATGCCATTTCGATTTTTTTAACGCCGT 32743 33 97.0 34 C................................ TTCCTAAGCGTTTGTCAGACCCTGAATTTTCAGA 32676 33 97.0 33 C................................ GGTACCAAAAATACACGCGTTGAGTATTTCGAC 32610 33 100.0 33 ................................. AGCATCTTTGATTCGGTCGCTATCAATTCTTCT 32544 33 97.0 32 T................................ TTTCAGGCGTTTTTATTTTAGAGGACCAATGT 32479 33 97.0 33 T................................ AAAGTCATAAAGGGATTGCTTGCAAAAGCCACC 32413 33 100.0 33 ................................. CAGCCAAGCGGCAAAAGCAGCGCGGTTAATCAG 32347 33 100.0 35 ................................. TTGCTTTCGCCCAGTGTTTTGCTGAACTCATCGAC 32279 33 97.0 34 C................................ AACTAATACCGTTGATTTTGGTACCAAGAAACCA 32212 33 97.0 34 A................................ ACTCGTTAATAATCATATACAAAGCCTTTTGGTA 32145 33 97.0 32 A................................ CAAACCCTGCTTAACGGGGTATCGGCAGCTGT 32080 33 97.0 33 T................................ CTTATAACAATATTGTTGTTAAATATGCTGGGA 32014 33 97.0 34 A................................ CTGTTCGAAAACGCGGTTGCGTAGATGTTGAAAG 31947 33 100.0 32 ................................. TAAAAATATCTTTACATTGGATGAATACCGTT 31882 33 97.0 33 C................................ ATCTTGAAAAAGCAGGGAAAACTAACGAAGGTA 31816 33 97.0 34 T................................ AATAATGAATGTAGATGAGCCGTTGTCCGAATGC 31749 33 100.0 33 ................................. CCTTTTTTACAGGAGCAATACCGTGAATAAACA 31683 33 97.0 33 T................................ GTTTTAAACAACCTATTTATGATTGCGGTTGTT 31617 33 97.0 32 T................................ AGTTGCAGAGTATGGTGATCGGCAACGACATA 31552 33 97.0 33 C................................ TTTCTGTTGTAACAGGCTCGTCAGATTTTCGGA 31486 33 97.0 33 T................................ TTACAGCAAGTCCATTTATTTTCTTGAGTTTTA 31420 33 97.0 33 T................................ AATCGGATAATATCAACCATGCCGATTGTGTTT 31354 33 97.0 34 T................................ TTGTTGAAAATGAGGCATTTGGGCTGACTACTGC 31287 33 97.0 35 C................................ CCATTACCTGAATCGTTTCCTCGCAATTCAGGGGA 31219 33 97.0 33 A................................ GGGCTATGGTTCGGGCGCGGGCATTGCTGAAAG 31153 33 97.0 33 C................................ CATTCCGTTTTGTCGCCGTTAAGGCGAAGTCTA 31087 33 97.0 33 A................................ AACATAACGCAGCGTACTCTCGGACATCTTGGT 31021 33 97.0 33 C................................ CTGAAGGAGTTGCGGCTATTCGTTCGTTACAAG 30955 33 93.9 33 C...............T................ ACGACAATGGTAACGGCGGGAGCACCCGGCTTG 30889 33 97.0 33 T................................ CACACCGCTTCGCCGACTTCGGCGCGCTTCACT 30823 33 97.0 34 T................................ AGTATGAAAAAGGCGATGAGGTGCCGGCTGAGTT 30756 33 97.0 33 C................................ ATTGATACCTTTTCGTGTTTCAGATGCAAGGTT 30690 33 97.0 33 A................................ CGTATCCATCGAAGCAATCCACGCAGAAACGCC 30624 33 100.0 34 ................................. TCAGGCTGTGCCATCACTCTCAGCGACTTGATAC 30557 33 97.0 33 C................................ GCTCGACGCCGACCGTTACCCGCAGGCGGCTGA 30491 33 97.0 34 C................................ TTATTCTTATTGGGATTTTCCGCCCATGCCGAAC 30424 33 97.0 32 C................................ TTTTATTCTCAGTGATTTCATGCGTCATTTTT 30359 33 97.0 33 C................................ ATCTGATAAGAATGTGTCTGATTCTGAGGTTGA 30293 33 97.0 35 A................................ ACAATAGTCCCAAAAATAACGCATACGAACGCCGA 30225 33 100.0 34 ................................. CGTTGCACAGTCAAACGCCGCAGGATTCAAACGA 30158 33 97.0 33 C................................ TGATTCCCCATGAAATTCTGATAGATGCGGGTC 30092 33 97.0 32 A................................ AAAAACGTTTTCAGCTTCTTGCATCTGAAGGA 30027 33 97.0 34 A................................ CTATATGATTCAGCATTTCTTGCAATGCTCTGTT 29960 33 97.0 34 C................................ AGTCTGTCGCTGGAAGAATAAAAAGCGGCCTGAT 29893 33 97.0 33 A................................ AAATACCCCCGCCGCCACGCTCCACAAACCCGC 29827 33 97.0 34 C................................ TTCGGTTTCCTGACTGGCTCGGCTGGCGGTCTCA 29760 33 97.0 34 A................................ TGTTGGTATCTGCTCATTATTCAGCCTTTCTTAG 29693 33 100.0 35 ................................. AACTGATGACTGGGGACTGTCGATTTATAACGACA 29625 33 100.0 34 ................................. TTTGACACCGACCACCCCGTTTACGAGAAATCGG 29558 33 97.0 33 A................................ TTCTACGCTGATCCGCCGTATTGGCAAACTGCT 29492 33 100.0 34 ................................. TGCTCCGTCGGGAAATCTGACGACGGTTTCGTTT 29425 33 100.0 33 ................................. GTTATTGCTGGTTACTGTAATTAGATTTGCTTT 29359 33 97.0 34 C................................ CGCCTGTCTCAAAACCTGTTCCTAAAAATGGTCC 29292 33 100.0 33 ................................. TTTTTAAATCATTATCTTTTAATTTAATCCTAA 29226 33 97.0 35 T................................ TACCCGCCCGCCATCGGCATGACCTACACGCCCGA 29158 33 97.0 37 C................................ AAAAACATCTACCGCGTGGACGGTCAGGACGTTTTGA 29088 33 97.0 32 A................................ CATCATCCCCCGGGTGTCATCATCCTTGACCG 29023 33 97.0 34 C................................ TTCTTCGATTTCGCGCTGCAAATCGCGACACCAA 28956 33 90.9 34 C............G........C.......... TCGTGCAGTTGAGTTAGTGGGTTGATACCGGCGG 28889 33 97.0 32 ......................C.......... GGCAAGACGACGGCGACGGTGACGGTGGCGAA 28824 33 90.9 35 T............G........C.......... AGGTTTACAACGACTATATCTTCATGGCGCGGCGG 28756 33 87.9 33 AA................A...C.......... CCGTAGCCGAGGGAGCAGATGTAGAGGTGCAGG 28690 33 69.7 0 C......AT......TTAA..T.A...C..... | A [28668] ========== ====== ====== ====== ================================= ===================================== ================== 94 33 97.3 34 GCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC # Left flank : GTGTGTTGAAACCAATTTGCTGGATAAGGCAGGGTTTGAATATACGGCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACTAATCTGTTTTAAAACCCGTTTAAAAAAAGGTCCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACTGTTTATATGCGTGAGTATGGTTATGGCTATCCTCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACTCAGTATTTGGGACGCCTTTTTTTGGCGTTTTTGCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACTAAAAACCATGTATCCAGTAGCAATTTGATTCCCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACTTTGATTCAACGTTCCAACATCAAACAAATCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCAAAAACAACCCTAAATACATTGGCTAT # Right flank : CAGACGGTGTTTTCCTTATTTAAACCGTCTGTAACCATTTACTTTTTGATGGTTATCTCTGAAAAATTATCTGTGGAATAGGAAATTTTTAATCCATCAAATCTCTGTCTTTCAGACGATTGAAATCGGATTTGTTTTGTTCTGATCAAATCAGATTTTCCAGCTTCGGGCTGCCGGATAAATTTGATGCAATGCAGGGTTTGATTGGCAAGGGGCTGGATAAAAATGGCAGCTTTGTTATAATGAAACTACTAGCAGTTACATACTTTTCTTGGCATTGCGCCGTTTTATTCATATTAACGAAAGAGGAAAACAAAATGTTTCCAGAATATCGCGATTTAATTTCCAAATTAAAACAAGAAGACGCCCACTTCGCCCGTCTGTTTGACGAGCATAATGAGTTGGACGATAAGATTACAGGTTTGGTTAATAATCCTGTTACCAGCGGTGCTGATGAGATTGAAGAGCTGAAAAAAGCCAAATTGAAACTGAAAGACGAG # Questionable array : NO Score: 5.47 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.35, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.20,-5.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [18-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 37123-35038 **** Predicted by CRISPRDetect 2.4 *** >NZ_VDZJ01000011.1 Neisseria sicca strain DE0367 NODE_11_length_83805_cov_92.031275, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 37122 33 100.0 32 ................................. AGTAAGTAAACGTAACTTGAGCAGAATCGCTA 37057 33 100.0 37 ................................. AGCCGTGGTGTTCCACTTTGCGCCGCCATTTGCTGCC 36987 33 97.0 34 C................................ AGCCTGTTCTTTAGGGTTAAGTGATTCCTCCTCC 36920 33 100.0 33 ................................. ATTGCCTGAATGCTCTGTCGTTGATCAGATGTC 36854 33 97.0 34 G................................ GAATAAACCTGATTCTTCAAATTCCGGTCATGGT 36787 33 97.0 32 A................................ GTCAGTGGCGGGACGGAACATCCTTGCCGCCT 36722 33 100.0 34 ................................. TGCTTGCCGGAGGTTGTTCATGTTGCGGTGGATT 36655 33 100.0 33 ................................. AGTTTGCTGCTTCGCCATCCTGCCGTAATTTCA 36589 33 97.0 34 A................................ ACAAGGCAATCATGCCTACGGCAAACCGGTCATG 36522 33 97.0 33 A................................ TGTTGTTTCGGTTTTTTGTTTTTTCCGAACATA 36456 33 97.0 34 G................................ TGCACCAATGGCAGCAAAGAAAGCTGCTATTGTA 36389 33 97.0 33 A................................ CAAAATTCGTCCATGAAGTAGATGAAACGGCGG 36323 33 97.0 32 C................................ CGATTTGTGCGGGACGGTTATTATACGTCCTC 36258 33 97.0 32 A................................ GTTTAAATCATGTAGCATTTTTATTGCATCCT 36193 33 97.0 32 G................................ CATTTTTAACGATTTTTGTTTTGATGTTTTGT 36128 33 100.0 33 ................................. GATTAGACAGGTAAAGCAACTTGAATATCCGGT 36062 33 100.0 34 ................................. ACATTCACAGACGACAGGGTTTTCCATACTTCCT 35995 33 97.0 32 G................................ ATTCCCACAATACGGATTTGCCAAGTCTGCAT 35930 33 100.0 33 ................................. ATCTAAAAAATAATTTCATTTTGAATTTTTCTA 35864 33 100.0 34 ................................. AAAACCACCGACAGCCCATCATCTGTAACATCCA 35797 33 97.0 32 A................................ ATGTCCTCCCAAGCTTCCGACGCTGCCTTCTT 35732 33 97.0 33 A................................ TTTTTCAATGTCAGTTTTTTTCATGAGGGGCCG 35666 33 97.0 35 G................................ GATACGTTGGCAGTCAATACACAATCGGCAACCCG 35598 33 97.0 32 G................................ TTCCTCAATTTTTTTAATTTCCGACCGGATTT 35533 33 100.0 33 ................................. AATTTTGAAAAATATTTTGTTTTTAAATCATTA 35467 33 100.0 35 ................................. ATTCTTTATCTTTCATAGTTTGATGTTTAAAAGGG 35399 33 97.0 34 C................................ CAATTTGCTGGATAAGGCAGGGTTTGAATATACG 35332 33 97.0 32 G................................ TAATCTGTTTTAAAACCCGTTTAAAAAAAGGT 35267 33 97.0 33 C................................ TGTTTATATGCGTGAGTATGGTTATGGCTATCC 35201 33 100.0 33 ................................. TCAGTATTTGGGACGCCTTTTTTTGGCGTTTTT 35135 33 97.0 32 G................................ TAAAAACCATGTATCCAGTAGCAATTTGATTC 35070 33 97.0 0 C................................ | ========== ====== ====== ====== ================================= ===================================== ================== 32 33 98.1 33 TCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC # Left flank : TGCACATAGGAATACAATATGCTGATGCTGATTACTTACGATATTTCGCTGGAAGACGCGGAAGGACAGGCAAGGCTGCGGCGCGTGGCGAAATTGTGTTTGGACTACGGCGTGCGCGTGCAGTATTCAGTGTTCGAATGCGACATTGCGCCCGACCAGTGGGTTGTTTTAAAGGACAAACTTTTGAAAACCTACAACCCTGAAACCGACAGCCTGCGCTTTTACCATCTGGGCAGCAAATGGCGGCGCAAAGTGGAACACCACGGCGCAAAACCGGCGGTGGATGTGTTTAAGGATACGTTGATTGTGTGAATCGCCAACCTACAGTTCTCATGAAAATGCTGCAAGGTTGGCGAACTGGGATTGTTCTTTAACAATCAGGATATTGTGAATGCGGGTGTAACGGAAAAGGCTGTGTTATACTCGCGTTCACGCTTTTCTTAGGAGCTTAGCGAAATCAGGGCTGCGAAACCTGATGGGGCAAGGCTTTTGAGAGAGGC # Right flank : TTTGATTCAACGTTCCAACATCAAACAAATCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCAAAAACAACCCTAAATACATTGGCTATACCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACTTTGATTCAACGTTCCAACATCAAACAAATCCGCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACTCTAATTAACGGGTTCTATTATGAAAAAGTTTCTGAACCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACAATCCCAAAAACAACCCTAAATACATTGGCTATACCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACTTGGGATTAGCGTGAGCGATGTTTTGAAGTATGAGGCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACAATTCGCCGAACATCACAAAAATTTCGGTCTCGCCAGCCG # Questionable array : NO Score: 5.68 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.52, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.20,-5.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [35.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //