Array 1 42317-42006 **** Predicted by CRISPRDetect 2.4 *** >NZ_VIBE01000012.1 Rhodobacter capsulatus strain SL NODE_12_length_139532_cov_57.0905, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================= ================== 42316 37 100.0 32 ..................................... CCTTTCGGCATCGTAGAACCTCTTGTTTAGGT 42247 37 97.3 31 .......G............................. GAAGCCGTTGATTTTCATCGGTCTCTCCTGT 42179 37 97.3 33 ..A.................................. TGATGGTCGCCAGCGGTTTGGTATGCTGGGAGA 42109 37 100.0 30 ..................................... CATGATGTTCCTTTCTTGGGTATGGGGTAA 42042 37 75.7 0 ....................T........GAACCCAA | ========== ====== ====== ====== ===================================== ================================= ================== 5 37 94.1 32 GCCTCACATCACCGCCAAGACGACGGCGGACTGAACC # Left flank : TAGGATCGCTTGACAGATGAGCGGGCAGCTCCTTGCGGTTCTTGCCATCGGTGCTGATCTTGCGTTTGAGCCCCCCCGCCGGATCGCCGAATTCGCTGATCGTCCGCCCTTGAACCTTGCCAATCTGCATTGTCGCGCCCCCAGCACAAAACCCACCAAGGCAAGGATGCAAGCCGTCAAGCCCATTCGCAACAGTTCCGTTGGGCCGGGCCGATTTGCCGCACCATCTGCCCGGTTTTCGACGTTCGGGGCGCGACAAAGCCTGTAGCCATCGCATCGGACTTCGCCTAGGCTTGCCGAAACCCGCCGCCTGCAGCGGCATCGGGTCGGAAATTCGGCAAGGAGGGTTCAGAAAACGCGCAATACACTGACACGGAAAGAGTAATTGCCACTGGAGCGGCGCGGAAATGCAAAAAAGGTCTCAAAATACGGCCTTGATCGTCCAGGGTTCCGAAACCCTGCTTGAAGATCTTGGCGTCTCAATGGCTTGCGGGACCTGA # Right flank : TGCAAACGGAGGTGCGGCAACAGCAAGGTTGCACCGGCTGGACTTCGGCGGCAGTCTGGCGCAACGGGGCGCAGGACACGGAAGATGTGGCGGGGGCAAGATGGACCTGTTTTTCAAGGCCACGGAATATGAGACCCTGCAGGCCTCATGGCTCAAGGTCCAGCAAAACGGCGGCGCGGCGGGGGGTGACGGCGTCACCATCGCCACCTTTGCCCAAGGGGCCACCGCATCTCTGCGCGATCTTGCGCTGGCATTGCGCGCGGGCGGCTGGCAGCAAGGCCCCTGCCGCCGCGTCGACATTCCCAAGCGCAAGGGCGGCACTAGGCGGTTGATGATCCCGCCGATCGCCGACCGCATAATTCATGGGACCGCATAATTCATGGGGCAATCGCCGAAACGCTGGAGCCGATCCTGGATGCGACGTTCGAGATCGGTGAGGGTGTCCGGCCGGGTCGCCAGCAGGCGCTCGAACTCGCTGCGGACCGTCAGCTGGAAGCGCA # Questionable array : NO Score: 2.68 # Score Detail : 1:0, 2:0, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCTCACATCACCGCCAAGACGACGGCGGACTGAACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.90,-9.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 79375-79014 **** Predicted by CRISPRDetect 2.4 *** >NZ_VIBE01000002.1 Rhodobacter capsulatus strain SL NODE_2_length_346364_cov_56.7239, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 79374 32 100.0 33 ................................ GTCTCCGCTCTGCTTCACGGCTGCGTCAACCTT 79309 32 100.0 34 ................................ ACGGATTGCATGGCGCCGAGGGACAGGCTTTGCA 79243 32 100.0 34 ................................ CGCCCGCGGCGTTTGACCTGGTCGCGGGCAGCTG 79177 32 100.0 35 ................................ GACGCGCTGAAGGAGGGTGATCTCGGTGGCGCCTT 79110 32 100.0 33 ................................ ATGGAAAACCGCGGCTTCACCGCGCGGGATTGG 79045 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 6 32 100.0 34 GTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC # Left flank : CAGCGATATCTCGGCGTCGCCGATCCGGATCTGACAGGCGGCCGCGTCAGCGGCGCCTTTCTGCTTCGCTTGGCGCGCCGGTTCCGAAGGGACCATCACCTCGACGAACTGCGGAGACTTGCCCTGCGAAGCAGCCTTTCCCTGCGGCCTCCCCCGGCGCGGCAGCTCGGGCAATTCGGCGCGCGCCCATTTCGCGACTAGGGACTCATTGGCGCCGATCTCCTTGGCGACGGTGACGATCTTGGTGCCGGCCTCGATCTTCTTCACCGCCATCGCCTTGATCTCATCGGGCCAGACTCGACGCCCGTTGTCGGCGGTGATCACCGGGATTCCCCAGACCACCACATCGCCGCCCTCCTTCTCGTCCAACATCTCGACCTCCTTCGAACAGAGAGAGGGCGATCATCGCAAAACCCTTATTTCATTGGAACATGGGGTATATGCACCGCTTACCGTGGATCGAAACAGGCTGCTTTGGGCGGAACACCTGATCCTGCTGG # Right flank : CGTGATGCGTGCCCGATCCATCGGGTTTCGCGGCCGATGCGGCTCCCGAAGTGATCAAGGCTGGTGCGCGCAAATCCATCGAGCCAATCGGGCGCCCAACGATCCGCCGCGACATGTCCGAAAATCGGACGCTCTGATTGCGAAAACTCGGCTATCCTGTTGCGGTCTTCCAGCTGCCTGCACACTGTGCCGGCCTATGGAACGGGAGATCCATGGACCGGGAGACCGCTATCGACAGCAGATCGGCCATTCGTTCGGGGGAGGAGCAGATGGCACACCGTATCAGAAAGCGCGGCTGGGAGGAGTTCATGGCGGTTGGCCGCGCGTCTCCGGATGTCCGCAGCGAAGTTTTGCAGAGTTGGCAGCGGTCCGCGGGGCGACGGATCGAAAAGCTGAAACAAGCGCCGCTCCTGAGCGAGGAGGACTTGCTGACGCAGAGGGCGCAGGCGCGCCGCCTGCGGTCCGGCGCGCGCGGGGTTCTGAACAGGGCAGGAAGTCTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.10,-8.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [35.0-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.5 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 120174-115656 **** Predicted by CRISPRDetect 2.4 *** >NZ_VIBE01000002.1 Rhodobacter capsulatus strain SL NODE_2_length_346364_cov_56.7239, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 120173 32 100.0 35 ................................ CCCAGCTCGTGCAGCTCGTCGATGATTGTCAGCAC 120106 32 100.0 34 ................................ TCCGCGCGATCATTGGTCAGACCATCCGCCGTCC 120040 32 100.0 35 ................................ ATGCAGGTGCAGGTTTCAGGCACCGCTCACATGGG 119973 32 100.0 34 ................................ TCTCGCACCCACGCCGTCAGCGCGCGGTAATTGC 119907 32 100.0 34 ................................ CAGCCCGCCTATCCGCGGCCGTTCCTGGTCGAGT 119841 32 100.0 34 ................................ CACCTTGCGGATTGTCACTTTCGCGGGGCGAAGC 119775 32 100.0 34 ................................ ATCTGCATGTAGTCGGCGGGCAGTTCGAGCCGCA 119709 32 100.0 33 ................................ TGGTATGGATCTGGCGCAAACGGAAAGTCTGTC 119644 32 100.0 36 ................................ CTGCGGCGTGAGTTGCCAGTGATAGACGCCGTGGAC 119576 32 100.0 35 ................................ TGCGCCGCCTATCGCATCCGGTCGAGCGCCGCGCA 119509 32 100.0 34 ................................ GATGCGTTCATGGCCTACGTCGGGCAGTGGACTG 119443 32 100.0 35 ................................ TCGCCCTCGATCCGCGCTTGCCTCACGCCTGCCGC 119376 32 100.0 35 ................................ AGGCGCATCTGATGTATATGCCCGGTGAGACGGCT 119309 32 100.0 36 ................................ TTTTCGTCATCTGGCAGGCTCGCGCCGCCACGCTGC 119241 32 100.0 36 ................................ CCGGCGAAAAACGGCCATGCCTCCGGGTGTCTGGCT 119173 32 100.0 35 ................................ AGCAGGTCAGCCGCGGCCCCGGTGAACTTCTGTTC 119106 32 100.0 36 ................................ AAGCAGTGGGGTGAGTGGGCTGACCAGACAAACGCT 119038 32 100.0 36 ................................ CGCGCCCTGCGGGTGATGGCGACGGGCACCACGGCG 118970 32 100.0 37 ................................ GGACCTGAAATTCCGCGGGAAACGCGGCGGCGAGCAC 118901 32 100.0 34 ................................ TGCTTTCGTGGGACTGGCCAGCCGCCCGCGCCAA 118835 32 100.0 34 ................................ GATTTCGTCGCTTACGACGCCTATCTGATTTCGG 118769 32 100.0 35 ................................ CATGCGGCGATAACTCGCTCTTGCGATCCGTCATC 118702 32 100.0 33 ................................ CCTGTCCCTCATATGCTGCCACGATGCCCTTGA 118637 32 100.0 33 ................................ CGTGTGGATGATCATGCAGCGCGGACGGCTTGG 118572 32 100.0 35 ................................ CGGTCCAGAGATAGACCGCGCGGACCTCCTCAGAC 118505 32 100.0 34 ................................ AGCCTGCGCGGCCGCATCGGCTTCCGCCTGCGTG 118439 32 100.0 33 ................................ ATCAGCTCGTCGTTGGTCAGCCGGACGATGTCC 118374 32 100.0 34 ................................ TGCCGTCTTGAGTGATGGGGCGCGAGCACATGTC 118308 32 100.0 35 ................................ GTCCAGCTCGCGCCACATGTCTTCGACCGTGCGCC 118241 32 100.0 35 ................................ GTGTCTGCCACGACGCCCTGCACCAGATCCGCGCC 118174 32 100.0 35 ................................ ACCGCGCACGCGCGAACGGCGTCAGCCCCGCGAAC 118107 32 96.9 35 .................A.............. GGCTTTACAGCCTTCGCGCCCCACGCCAGACGGAC 118040 32 100.0 34 ................................ TCTTCAATGGATATGGCAAAACCGTCCGCGACAT 117974 32 100.0 34 ................................ ACCGTCATCACCACGCAACCGCCCTGCACCACCG 117908 32 100.0 34 ................................ TTCATAGTCCATGAATGCCGCGTCCGGGCGCCGA 117842 32 100.0 35 ................................ AACCCGATCATGGCCCGCCTCAGCGCCGCGCTGAC 117775 32 100.0 34 ................................ ATCCGCGGATCGGCGTGACCCGCCCCGCCCATCG 117709 32 100.0 35 ................................ TACAGAGTTCCGGTCTTGTTCTGTTCCGGTAACAG 117642 32 100.0 34 ................................ TTGTCTGACGCGCTCATCAGCACGTCAAGATTCA 117576 32 100.0 36 ................................ TCGGCAAGGACATCGCCGATCTGGGTAAGGCCGGTG 117508 32 100.0 35 ................................ ACCCGGCGCCGCAGCGAGTGCGTCTGGAACAGGAT 117441 32 100.0 34 ................................ TATGCTGGCTCGACCGAGTTCACGGCGGGCTATC 117375 32 100.0 36 ................................ GGGTCGAAGACCTGCTTGACGCGCTGGATCTGCGGC 117307 32 100.0 36 ................................ GCTGCTGACACCGCCAACAAATATGTGGTCAACACT 117239 32 100.0 35 ................................ GCTGGCGCGCGCCGCGCCGGATCTTTGTCTGCGCG 117172 32 100.0 36 ................................ TCGGCCTCGATCCGGTCAGCCTCGTATTGCGCGCTG 117104 32 100.0 35 ................................ CTCGTCGCTGCGCGGGTCAGGCGCGGGGCTGGACG 117037 32 100.0 35 ................................ TTGATGACCAGATCCGCAATCGGCCGGGCTCGATC 116970 32 100.0 36 ................................ CTATGAGGGCTGGCGGCCCGGTCGTGGATCCCGCCG 116902 32 100.0 35 ................................ ATCAGCTTGACCGCATCGAAGCTGGTCACATCGCC 116835 32 100.0 35 ................................ GGCGTAGATCTCGGTCTGGGTGCGCTCGCGGTTGC 116768 32 100.0 35 ................................ ATGGCTATGGCGGCAGTGTCAGGTTTTCCAGCGGC 116701 32 100.0 35 ................................ CCGCCACGTCTTGGAACAGCGTGCCATTGGCCCCG 116634 32 100.0 34 ................................ AACTGACCCGGCAACGGCCTATGCGCTGGACGTG 116568 32 100.0 35 ................................ AGCTTTCAATGGGGGCGGGCGCCGGGCCAACCTAT 116501 32 96.9 35 .......A........................ TGTGCCGGTTCCCGGAGACGCTGGGGCCCTCGCAC 116434 32 100.0 35 ................................ AATGCGGCGCGGGCCTATGGCTGACGGACCCGCCC 116367 32 100.0 37 ................................ TGCGTGCGCGCCATGAATTCATCGAGCGCCATCGAGC 116298 32 100.0 36 ................................ ACCAATGCCGAAGCCAAGGCCGCAGCAGCGGCTGCG 116230 32 100.0 35 ................................ AAAAAGCCGCCGACAAACGCGGCAACCGGCCCGGC 116163 32 100.0 38 ................................ CCCGCGGCGTCCCGAAGACGGTCTTCTGGTGCCGCTGC 116093 32 100.0 35 ................................ ACCCCGAACCTGTCGGCGGCGAACACCGATACCGC 116026 32 100.0 36 ................................ ATCGATGATCAAATCCGCAATCGGCCGGGCTCGATC 115958 32 100.0 38 ................................ GGTGTCCAGCGTCACATGCAGCGGCGTCGCATCGCCAT 115888 32 100.0 35 ................................ CCGGCACCTCAGCCCCGCCCGCTGTCTCACCAACA 115821 32 100.0 36 ................................ TCTATGGGAGGCTAGGGAGGCTACGCACCTTCAAAA 115753 32 100.0 34 ................................ CGCCGCGCAAAAAGCCCGCCAAGAAGCGGAGCAA 115687 32 93.8 0 ............................T..G | ========== ====== ====== ====== ================================ ====================================== ================== 68 32 99.8 35 GTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC # Left flank : TCGACGCCTATCCGCCCTGGTTCTGGAGTTGAGATGCTGGTTCTGGTCACCTACGATGTGAACACGCTCGAAGAGGGCGGCAAGAAGCGGCTGCGCCGGGTGGCGAAAGCCTGCGAGGATTTCGGCCAGCGCGTGCAGTTCTCGGTCTTCGAGATCGAGGTGGACCCGGGGCAATGGGTGAAGCTGAAAGCGCGGCTGGAAGCGGTCATCCGGCCGGAGTTTGACAGTCTGAGGTATTATTATCTGGGGTCGAACTGGGAGCGGAACGTTGAACATGTCGGCGCCAAGCCTGCGCTTGACCTGAACGGCCCGTTGATCCTCTGATCTGCGAACCCCAAGGGTGTGGCCGTTTCCCACCCGGTTCGCACCGCGTCAGCTCTTTGAAATTGTGGATGAAGCACCGGAGCACCTTGCGCTGCCGCTCCGGAGGCGCTTGCGACAAGCACCTTCGCACCACCGGAGCAATTTACACCGTCTGGTCAGCGGGTTACGAAACGGCA # Right flank : CGGTGCATCGGCCCGATAAACCCCGATTTTCGGCCCCTGAGGGGAAAGATTCTTGGCACAATTCCGCGCCCGGGGTCGAATCGGGCGATGATCGGAACGGTGGTGGAGGTGGGCGCGGACCGGCTGAACGCCTGGTTCGGGACCGCTGCCGCGGGTCGCTGATACCGCGCCCAGCTCTCATACGGGGCGATGGCGATGATGCTCCTGCGGACCTGACGGGATGCCGGACCGCCTGCGGCGCTCAGGATGTGACGGAGTTGGGGAGCGAGAACCGGCTACGGTCGGTTCGAGACCAGTGTCGCGGACTGTCGCCACGCGGATGCCGCCCCCCTCGGCCCTCATACGGGACGATGGCGGTGCTGTTCCTGCGGACCGGACGGGGTGTCGGCCTGCCTGCGGGTCGCAAAACGGAATGGAAATGAGCGCGACCGGCGTGCGCCTCGAACGCGAGGCCCTGCGGTGGGCGCGGCGGCGGTCAAATGTGTCGGGGAGCGTGCGAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.10,-8.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 197101-196777 **** Predicted by CRISPRDetect 2.4 *** >NZ_VIBE01000002.1 Rhodobacter capsulatus strain SL NODE_2_length_346364_cov_56.7239, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 197100 37 100.0 34 ..................................... TCTTCCATCGAGCACTTGCAACCAAACACCCCGT 197029 37 100.0 34 ..................................... CTCCTTTCTCCACCCCGCGGGGTGTGCGCACGTG 196958 37 100.0 37 ..................................... GGGCGTATTCACGGCCCACCAACGCCCCCCATGCGGT 196884 37 100.0 34 ..................................... GGAAGATTTTCGGTCATCTTACGCGATCCGCATA 196813 36 78.4 0 .....................-.......G.CAGCCG | T [196790] ========== ====== ====== ====== ===================================== ===================================== ================== 5 37 95.7 35 GCCCAGACACCTCTCCCGCCAGTAAGCGGATTGAGAC # Left flank : GGTAGCCGTAGCTGTCGGGGGAAAACAGCGGCTCGAGCCGGGGGTCAGCGCGGCGGCGACGGCGGTTTGCACGATCCGGTCGGAGACGGCGGGGATGGCGAGGCGACGGGTGCCGCCGTCGGGCTTGGGGATCTCATGCAGGCGCAGCGGCCGGGGTGCGTAATTTCCGTTGCGCAACAGCCCCGACAGCCGCGCGATCGCCGCCGCCCCCTTGGCGGCAAAGGCTGCGATGCTTTGCCCGTCGCCCCCCGCACATCCGTTGTTGCGCCGCACCTTTTCGAATGCCAAGGTGAGGGCATGGGGGTCGGAAATCTGGCCAAACAGGCCCGAAAATCGGCCTTCGTCGTTGGAAATCATGCCATGCCCCTGCGGGATAAGGGAAAAAGCGAGGTGAGAGACACAGGAAACCAGAAAATCGGGCCCGAGTCGAGGGATGCGGCACGTCACGGTTGGAAAGCGGACCAAAAAGCGCTTTCGGGTCTTGGGTTTGCAGAGGGTAA # Right flank : AGGGGCGTCAGCCGCACCCTTCCCGCGCCGATGGTGGTGTCGGCGCCGATGTGCAGCGCCTCGGCCAGCGTGAGCAGGCGGCGCAGCTCGGGCGGGGGCGCGGAAAAGGCGATGCGGCCGGAAAAGCCCGGACGCGGTTTCGTGCCCCGCGCCAGCGCCCGCCGTTCGCCCGCAACGGCCGGGGGGGCGGCGCGCAGCGCCTCGGCCAGCTCCGCCTCGGGCAGATCGAGCGCAAAGCCGTGCCACTGCGCGATCCCCTTGGCGCGTTTGGCAAATCCTGTCAGCAGCGAGGCGGGATCGAGGCCCAGCCCCGCGTGATCGGCGCGCAGGCGCTGGATGATCGGGGTTTGCGTGCGCAAAGCCAGCGCCCCCGCAGGCGGGGGGGAAGCCGTCAGTTGCGCATGGGACACGGCGGTGATCTGCATCGGCACCCGGCCCGCGCGGCCCAGATCAAGGCCGCCGCGCAGCCCGGCAATCAGCGCGGCGCGAAACTCGGGCGC # Questionable array : NO Score: 2.85 # Score Detail : 1:0, 2:0, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCCAGACACCTCTCCCGCCAGTAAGCGGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.00,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [25.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA // Array 4 199273-199448 **** Predicted by CRISPRDetect 2.4 *** >NZ_VIBE01000002.1 Rhodobacter capsulatus strain SL NODE_2_length_346364_cov_56.7239, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================= ================== 199273 37 100.0 33 ..................................... AAAGGCAAACGATGCTGTACGTTGCCGTCATTC 199343 37 100.0 32 ..................................... GCGGGTGGGCCGCTCAAACACCTGTTCTGGGT 199412 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ================================= ================== 3 37 100.0 33 GTCTCAATCCGCTTACTGGCGGGAGAGGTGTCTGGGC # Left flank : CGCCCGGCGAAAACGCCCCTCAACGCCGCGATCAATTACCTGACCGCGCTTTTGGCCCGCGACATCCGCGCCGCGCTGATCGGCGCGGGGCTGCACCCCGGCTTTGGCGTGCTGCATCAGGCGCAGGACCGGGGCGACGCCGCCGTCTATGACCTGATGGAGGTGTTCCGCGCCACCCTCTCCGAGGGGCTGGCGGTGAGCCTCTTCAACCGCCGCCGCCTGCGCGAGGAGATGTTCGAGCCGCAGGGCGACAGCCTGCGCCTCCTCACCCCCGGTCGGCGCGCGCTGATCACCGGCTACGAGGAGGCGCTGGAACGGGTGATCCGCTCCAGCCAGACCGGACAGCGCCACGCCCTGCGCCGGATCATGCTCGAAGAGGCCCGCGCGCTCGCCCGCCACTGCCGCAGCCCGGAAACGGTCCCCTACCTGCCGCAGCTGCAGGACTACTGAACTCGCCAAGGATTGCCGTCCCGTGGCGCCGCCCTCGTTGAATAGGGCAT # Right flank : CTTACCCTCTGCAAACCCAAGACCCGAAAGCGCTTTCTGGTCCGCTTTCCAACCGTGATGTGCCCGACACTCCGAAACAGCCCTTGCAAGCCCGGTTTTGCTGCGTGTTTTTCCTCCTTTATCCTGTGACTTCAAGGTCATGGCAGGGTTTCCAACGGTGAATCGGCGATTTTGCCCGATTTTCCGCCTCTCAAGTTCAAACTGGCAGGCGAAATCCGTCCTGTCCACCGTCAAGATTGCCCCGCGCCACGACAGACCGCCGCAGGGCCGCCCGCCCGGCAAGGGCTTTCGCAGCCCCCCGTTTCGCGGCAGACTGAGGCCCGAAATCTGCACCGAAAAGGGTCTGCCATGCCGCGCGCCGAGATGCTGATGGTCTTCACCTATGACGTGTCGCAAGACCGCAAGCGGCGTCGGGTGGCGCGGATTTTGGAAGGGGCCGCGACGCGGGTGCAATATTCGGTCTTCGAGGCGCGGCTGAGCGAGCAGCGCGCGGCGGCGCT # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCAATCCGCTTACTGGCGGGAGAGGTGTCTGGGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.00,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [38.3-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA // Array 5 206197-205946 **** Predicted by CRISPRDetect 2.4 *** >NZ_VIBE01000002.1 Rhodobacter capsulatus strain SL NODE_2_length_346364_cov_56.7239, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =================================== ================== 206196 37 100.0 33 ..................................... GTCGATCCGGTCTCAAGCTGCGCCTGCGTCACG 206126 37 100.0 35 ..................................... ACGGGGGCGGCGGCGAGGCAGGCGAAGGCGGCGGC 206054 37 94.6 35 .......C.............A............... TGCGTCACCTCCGATCAGCGCGAGGATGCGATCAG 205982 37 83.8 0 .......C..............C.......G..C.TG | ========== ====== ====== ====== ===================================== =================================== ================== 4 37 94.6 35 GCCCAGATACCTCTCCCGCCAGTAAGCGGATTGAGAC # Left flank : TGCACGCGATCGTTCCGGCCCTCCCGGGGCAGACCGATGCGGCGGGGCCGCCCGATGGCTGGCTGCAACTGCTGCAACTCTCGGTGCTGGTGGCGATCATCGCCGGGATCTGGGCTTTGGCCGAGCGGGTCTATTTCCGCGACAAGCGGTCCTTCTGGGGCTGGCTGGCCTATGGTGCGGCGGCGGCGGCCTTTGCGGGCAGCGAGGCGCTGCATCTGTGGCCCGCGCCTTGAGGGGCTGCGGCACCCTGTCTTGCATCCCGGAAACTTCGCGGTGGACAGGGGAAATTTCGCCTGCCAATCTGACCTTGACGGCGGGAAAGCCGGGCCAAAAGGCCGATTCACTGTTGGAAAACCTGCCATGACCTTGAAAATCAAGGATAAAGGAGGAAAAACACGCGCAAAAACCGGGCTTGCAAGGGCTGTTTCGGGGCGTCGGGCACATCACGGTTGGAAAGCGGACCAAAAAGCGCTTTCGGGTCTTGGGTTTGCAGAGGGTGA # Right flank : GGGTGTCGGTGTATGGGCCCGCCTGCGTGCGGATGTGGCGTGGTGACGCATCCTTGACGGCTGAAACATCAGGGCTTGCCGGGAATCATTCCTGCCCCTCTCATGTCCCCATTCATGCAGGGGGGCAGGATGTTCCTTTATCTCGAGGGCGTGAATCTTTACGCCACGATTTACGATACCGAAGACCTTTCCACGATCCGCGGCGGCTCGATGGCGCTGGAAACTCTGGCGCAGCGGGCGCAGGCGGCGCTTGGCGGCACGCTGCGCGGGCAAGGCGCCTCGACAGCGCTGTTGGAGTTTTCCGGCCCGCCCCCCGAGGAGGACAAGATCCGCGCCTTTCTGAGCGCCACGCCGCAATGCCATTTCACCCTCACCTGGGGCACGGGCGAGACCGAGGCGCAGGCGATCAAGGCGGCGCGAGACCGGCAGTTTTCGCAGCTTGCCACGGTGGTGCTGCCTGCGATCATGGCGGGGGTGCGCCCCTGTGCGATCGATCACAC # Questionable array : NO Score: 2.59 # Score Detail : 1:0, 2:0, 3:0, 4:0.73, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCCAGATACCTCTCCCGCCAGTAAGCGGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.00,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA //