Array 1 976906-974739 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP030235.1 Salmonella enterica strain SA20031245 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 976905 29 100.0 32 ............................. TGAACTATATCAATATAAAACTCACTAAAATA 976844 29 100.0 32 ............................. CCACACGTTGAGCGTAAACCTCTGCCGTTTCC 976783 29 100.0 32 ............................. ACTCCGCCACCCGCGTGGCGGGTAATAAAAAA 976722 29 100.0 32 ............................. TCAAACATCAGCGATTCATCGACAGCGTATGA 976661 29 100.0 32 ............................. TATTCACTAAGCATTTCATTTTTTATAATGAT 976600 29 100.0 32 ............................. CGACCCCCCATTTTTCCGAATCGTAAACGAAC 976539 29 100.0 32 ............................. GGAGGTGATAACCGCCTCGCTGAACGCTACGC 976478 29 100.0 33 ............................. AACATCCAACGGATTCGCTTTACTCAACCATGC 976416 29 100.0 32 ............................. TCGTTTCGTGTTGCTTCATCTGGCAGGTCCAA 976355 29 100.0 32 ............................. TCAGTTACCGATGTTAAAGCAAAATCCGCTAA 976294 29 100.0 32 ............................. CGTAAGAGCCAGGCGATGCCAGGCACTAACTC 976233 29 100.0 32 ............................. GCATGACAGGGCGTATTCATCCCACGTGCGTT 976172 29 100.0 32 ............................. TTTCCTGTAACATTCCGATATATAATTCTCCG 976111 29 100.0 32 ............................. ACAAAAGAAATTGTGACACCTAACACGGCCGA 976050 29 96.6 32 ............................T GTAGTTATACTAATAATGTAGTTGAGTAAGAG 975989 29 100.0 32 ............................. GAACTGATGGGCGCCATTACCGGCGAATTAGC 975928 29 100.0 32 ............................. GACTGGTATATCAACAATCATGAGCAATTCTG 975867 29 100.0 33 ............................. GAATCCCAATCTATTACCGGCACGTAGCCGGGG 975805 29 100.0 32 ............................. GCAATATCAACCGGGCGACCTGTCGCCTGCTC 975744 29 100.0 32 ............................. CTCTACGCTCGTTGCCCACGGAAAAGTCTCGT 975683 29 100.0 32 ............................. TAACCGGCACCTTTACCCTTGCGGAGGCTGAG 975622 29 100.0 32 ............................. ACGATTTCGAACGCGTCAGCGGTCCTGACTAC 975561 29 100.0 32 ............................. CATGGCTGAGGGGATGGCGCTTAAAGACTGGC 975500 29 100.0 32 ............................. CGGGCGTTAACGTCCGAAGAGGTTCGCGAAAC 975439 29 100.0 32 ............................. TGGCACGCCCCCGGCTTCTCTATCCGCGCTTT 975378 29 100.0 32 ............................. GTCACGTTCTGGAGTGTTCACAGCGTGAATTG 975317 29 100.0 32 ............................. CGGTTCCGTCATTGCAGATCCCCCACTTCATC 975256 29 100.0 32 ............................. TAACGCTTCAATGTCGCAAGCTTCAGTTCGTT 975195 29 100.0 32 ............................. GATTTACTAAGGTCAACGAGGGATTGAATTGG 975134 29 100.0 32 ............................. GCGAGGATCTTGTGTTGCAGGTTGGTCTCGCC 975073 29 100.0 32 ............................. CAGCGCCGTCCCGCTGCGCAGATGTTCGGTGA 975012 29 100.0 32 ............................. CAGGTCTATTGGACGATCGATAAAATCATTCA 974951 29 96.6 32 .............C............... ATAATAAGCTCAATAATGTAGATATTGAATCA 974890 29 96.6 32 .............C............... ACGACGGCACAAAAGAAATTTCCACCGTGGAT 974829 29 96.6 32 .............C............... TCGCACAACGCCTGGATATCCGCCCATCGGCC 974768 29 93.1 0 .............C.A............. | A [974741] ========== ====== ====== ====== ============================= ================================= ================== 36 29 99.4 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : CGCCAGTGCTGCGCATTCTTGCTCCGGAGTGGGATGACGCGCCGCGAGAGAACTGGTTATCCAGCGCCATGCGTAACAGCGCCTATGTCTATCCCGATCATGGGCGCATGTGGCTGACGCAGCGCATATTACGTGAGCAGGGGACGATTCGGATGCCGCAATCTGCCCGCTTGTTGATTGAGTCGGTCTACGGTGAGGATGTCAACATGCCGGTTGGATTTGCAAAAACCGAGCAATTGCAGGAAGGCAAATTTTATTGCGACCGGGCATTTGCCGGCCAGATGCTGCTTAACTTTGCGCCGGGCTACTGTGCTGAAATTAGCGATTCTTTACCGGAGAAAATGTCAACGCGGCTGGCGGAAGAGTCTGTCACGCTGTGGCTGGCGAAAATCGTGGATAGCGTCGTAACCCCTTATGCCAGCGGTGAACACGCCTGGGAGATGAGCGTGCTGCGAGTACGTCAGAGCTGGTGGAATAAACATAAAGACGAGTTTGAAAAA # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 987404-987132 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP030235.1 Salmonella enterica strain SA20031245 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 987403 29 100.0 32 ............................. GTGGATATGCTGGCCGAGAAGGTTGGAACAGA 987342 29 100.0 32 ............................. CCATCCTGGCGGAACTGTATGCAGAAACAGGC 987281 29 100.0 32 ............................. GACTACCCGGCATTTGTGGACGCATATCGGCA 987220 29 100.0 32 ............................. GGCGTGGTGTATATCGGTCTTGATGCGTTGTC 987159 28 93.1 0 ........................G-... | ========== ====== ====== ====== ============================= ================================ ================== 5 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCTTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //