Array 1 192496-191250 **** Predicted by CRISPRDetect 2.4 *** >NZ_LUDC01000002.1 Pasteurella multocida subsp. multocida strain ATCC 1662 ZB100001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 192495 37 100.0 33 ..................................... ATGATAGCATGATAGCTTTCTTTGCGATAATGA 192425 37 100.0 34 ..................................... AACTCTCTAAATTCTCCATATATTTTTTTAGATC 192354 37 100.0 36 ..................................... ATGAGCACGATTAACAGTGCCCACTGGCGGGTTATT 192281 37 100.0 34 ..................................... TTGCCCACTTTCAGTTATTACAAGCATACTCTCT 192210 37 100.0 34 ..................................... ACGCTTACCTTTTAGACCGTGTTTGTCACGATAG 192139 37 100.0 31 ..................................... GTTGACATGTTCGAATTGAGTTCTCTGTTGC 192071 37 100.0 35 ..................................... AATTGCACGTGTGTCGATGGAGCAACTTTTACAGT 191999 37 100.0 35 ..................................... ACTAGACCCCATAAATCTTCTTTCTTCATACGTTG 191927 37 100.0 35 ..................................... AGAAGTTGCTTCACTAGAGCAGTATGCTGAAAAAC 191855 37 100.0 34 ..................................... GTATTGCCACAACAGTTCAAGCAACTCCTCTTGT 191784 37 100.0 34 ..................................... CTAAAAGTTGGCGAATTGTGTTCATTTTAGTGAC 191713 37 100.0 34 ..................................... TCTCCGTTGCTGGTTAATGTATAAAAACGCAAAT 191642 37 100.0 34 ..................................... GATGATACCCATGCATAATAGACGTCGCGTGTAC 191571 37 100.0 35 ..................................... TGTACGCTTTGAGTAGGTTCTCAAATGTTGGTTCT 191499 37 100.0 32 ..................................... GTTAAATAGTCAAATCCCTGTATTCCGCTTTC 191430 37 100.0 35 ..................................... TTTGAGAACTTACCACCTGTTAAATAGTTCGCTGC 191358 37 94.6 35 .............T......................C GGTGAGACGTGTTTGTACTTCTCGATCCAGTAGCT 191286 37 91.9 0 ................................A.C.A | ========== ====== ====== ====== ===================================== ==================================== ================== 18 37 99.2 34 GTCGAAAGACCCCACCCTGTTCTAAAGGGATTGAGAT # Left flank : CTGATAGCCACGCTTATAACGGACGCTATTTCATTAAAAATGGGAAAAAATGGATCCATAATATTGATGCATTACGTAAAAAATTAAATGCTGATTATGGTCGCTATATTGATGATGAAGAATTAGAAGCCTCTTCTCCAGAAGGTTTCGGCTATGACGTTGTTGCCTACTACATCTATAACGCCCCAAAAAACCCGCTATTAGACTCTCATGAATTTAAAACACTAATGAAAAAAGTCCATATAAATTAAATTTAAACATCAACAAAAAAGGGGGGGGGGGAAAGCCATTCGCAAGCACGAGAAAATCACATACCATTTTGCATTAAAGTAGATTTATTCTCCTCTTTTATATAAAATAGCAACGTCTTTTTCTGCAATGGAAATAACACAATTGATTAATATTTGCACAACCCCGGAGTTAGCCTCTCTAACAAGACATAAAATTGGGAAGTGCCCAATTAACATATTAATAAATAAAGCAAAAACACCTCCCTGCCG # Right flank : CAGTGACCTCAACTGCCTCTGTGAATACAGATTTGTAAAAGCATTTTCCTTTCTTTCCCCTACCCTAAAATAGGCTCATTGTTCGTTTTTACTTACCAAGAATATGGCTCATCGAGAACGTTATTTAATTGCTTACGACATTTCTGATCATCGCCGATTAAGTAAAGTGCATAAAAAAGTGGAAGCCTTTGCGATTGGTGGGCAAAAATCCTTCTATGAATGTTGGTTTACAAAAGGTGAATTGGCACTTTTTAAAGCAGATATGGATCGCATTATTGAAATTACAGAAGATCGGGTCTTTATTTTTCAAATTAGCCCATGTGCTGAACCTATGTTATTTGGAAAAGCAAGATTACAGTCAACATCGCCTTTTTTGATTATTTGAGGAGAAACAGATTATGTCTAGTTTATATATTGATCGGAAAGGTGTGGAGTTAAAACTTAATGGGGAGGCACTGATTTTTTATGAAAATGAAGCGCGCATCGGTACTATTCCCCTT # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAAAGACCCCACCCTGTTCTAAAGGGATTGAGAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.00,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 2 278372-277343 **** Predicted by CRISPRDetect 2.4 *** >NZ_LUDC01000002.1 Pasteurella multocida subsp. multocida strain ATCC 1662 ZB100001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 278371 37 100.0 34 ..................................... AACGAAATAATGAAGTGTGGGCTAACAAACTTAC 278300 37 100.0 32 ..................................... AATTTAAACATTTTATGTTAGCACCTTTGACG 278231 37 100.0 35 ..................................... TGATTAAACGTGTTATATTATATCTAGGTATTTCG 278159 37 100.0 33 ..................................... TAAATTTCTCTAAAAATTGTCCGTTAGAATACG 278089 37 100.0 36 ..................................... TATAGTTTGCTCCGTAATATAGGGTGTCTCGATGAT 278016 37 100.0 37 ..................................... ATTATTACAATTCTATCTAATATCTTCCTTAACTATT 277942 37 100.0 32 ..................................... GATTGTTGTTTTCATAACATCCCTTCTTTTAA 277873 37 100.0 34 ..................................... TAGACGAAATCCACAATTACAGCGATCGCACCGT 277802 37 100.0 33 ..................................... AAATTATCATAAGCGTTCACGCCGACAAATTGA 277732 37 100.0 34 ..................................... TCCATATCACGGGCGTATTCCAACGCATCTCCAA 277661 37 100.0 32 ..................................... TCGACGGGATTATATCTAACCACATTCACGCC 277592 37 100.0 34 ..................................... GATGCTTTCTTGATAATTACGAAGTTTCATTTTT 277521 37 97.3 32 .........T........................... CTTTCATTTTAATACTTCTAATAGGTTCTTTT 277452 37 97.3 36 ....................................C TGTCTAAAGCCGTGTAATGTTTGTCTGTGTTTATAT 277379 37 73.0 0 A..A.........AA..G........A.A...T.TT. | ========== ====== ====== ====== ===================================== ===================================== ================== 15 37 97.8 34 GTCGAAAGACATTGCCCTGTTCCAAAGGGATTGAAAT # Left flank : CAACAAACATTTTCGCCAAACGTACGGGGGTTTCTTCTAAACTATCATCACGTAAATCTAACCCAATCAGCTTCATCACTTCACGCATATGTTGTTCAATCCCCGCTCGACGCGTATCTCTGTCTTGTTCTGGGGTAATCATTGGGGTTTCAATCCCCTTACTTAATAATGCGTTGCGGACTTTTTCTGCTTCTGGTGAAATCTTGTTCATGTAAAACTCCCGATAAATAATCCGCACATTCTAGCAAACTCTCGCCAAAGTACAAATGAGAATAATTGGTAGAGAGGATGAAAAGTTTTGGGCTCAAATCAATATCCATAAAATAGGCATAGGCTAAAAAATAAATATAATGTAAAATGAACACGTTCTTTGGCTAGCAGATGAGATTCAAATTGATTATTTTTCATTCAAATCAAGAGTTAGCTTTCCACTTCAATGGGAAAATTGGGAAGCCTATGTATAACATATTGAATAAAAAAATAAAAACTCATCCTCTGCG # Right flank : ATGTAGCGTGGGCATACTTGCCACCACATAACCACTCTAAACTTTCCCATTCAAAAGTACGGTTATTTTTCAAAAAGTTTTACAGCTTTCTCTCTGCTTATTTCTTATTAGTATAGGCTCAATAAAAAGAGATCATCCTGCGTTTTTGGTATAAAATATTGCCCGTTAAACTCAACTAAGGATTCAATTATGTTGCCTCTTGAACAAGCACTGACTCAAATGCTCGCTATGTTGCCAACACCAGATTGTGCGCAAGCCGAACAACTCCCCCTTCAACACGCGGTGAATCGCATTTGTGCTGAGGATATCATTTCCCCGCTTAATGTGCCCTCATTTGATAACTCGGCGATGGACGGCTATGCGGTGCGGCTGGCAGATTTAGCACAAAATTTAACTCTCACGGTCGCAGGAAAGTCCTTTGCGGGCGCACCTTTTGACGGGGAATGGCAAACACAAAGCACGGTCAGAATTATGACAGGGGCAATGTTGCCGGTGGGCGC # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:0, 3:3, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAAAGACATTGCCCTGTTCCAAAGGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.30,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : NA // Array 1 527934-525626 **** Predicted by CRISPRDetect 2.4 *** >NZ_LUDC01000001.1 Pasteurella multocida subsp. multocida strain ATCC 1662 ZB100000, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 527933 28 100.0 32 ............................ ATATAAAAACAACAAAACGAAGAAATACGAGG 527873 28 100.0 32 ............................ ATAAAACACAAGCTTATCACCACTAGCGAACA 527813 28 100.0 32 ............................ TCTCGTCGTTTAATCATTGATACAAAATGTTC 527753 28 100.0 32 ............................ CTTTAATCGTTCCACAGTTGAAGTTAAGCCTT 527693 28 100.0 32 ............................ GGCTTTGATTTTTGGAAAGGGCACAATCAACA 527633 28 100.0 32 ............................ GTCTGGTGAATAGTGTCGAACCATCGGGATAA 527573 28 100.0 32 ............................ TTGACGTGCGTTTTTAATTGCTTCACGTGTGC 527513 28 100.0 32 ............................ TGAGCAAGTGCATCAATTGCAACAGCTAATTC 527453 28 100.0 32 ............................ TTTTTTGCAATTTTATTGAAATTTACTATAAC 527393 28 100.0 32 ............................ GCGTGAGTGGGCAATGGAAGGTGGTCGTAAAG 527333 28 100.0 32 ............................ TTGGCGGTCTTGCTCAAAATAAAATAAATGGT 527273 28 100.0 32 ............................ AGAGCGAATTCCATCTCCATTTTCAATAAAAA 527213 28 100.0 32 ............................ AAGACCTAAAGTAACAAGCCTAGACATCTGAA 527153 28 100.0 32 ............................ AGAAGCTAATGCAACAGAACCTAAAACAGTAG 527093 28 100.0 32 ............................ ATTCTTGAATAACTCGCCAGAAATACGCCAGT 527033 28 100.0 32 ............................ GGCACGGCAAAGGGTATTTTCAGAACCTTTAT 526973 28 100.0 32 ............................ GGAAAAAGCAAAAGCGACGAAAAGACGGACAT 526913 28 100.0 32 ............................ ACCTGTAGAAGAAGAACCAGAAGAATTACCAG 526853 28 100.0 32 ............................ AATAAAAGGAATACGTCGAATCAAAAAGCGTG 526793 28 100.0 32 ............................ AATTGTTCAAATGTTAAATCTTTATCATCTTC 526733 28 100.0 32 ............................ TCCAAGTTCTAATTCTGGTGGTTCTTCTGGCA 526673 28 100.0 32 ............................ AACAACGGTAATGGCTACAATTTAATTAATTT 526613 28 100.0 32 ............................ TTTTTGAGTAAATATTGGTCTTCTGTCGTTCA 526553 28 100.0 33 ............................ CTAAATCGCGTCGTTATGTGTGTCGCTAGTTTT 526492 28 100.0 32 ............................ TGAAAGCGTGTATCAGTTTTGAAAAGCTCAAT 526432 28 100.0 32 ............................ CCGCACGCGGCGCTTGTGTGACTACGCTTAGA 526372 28 100.0 32 ............................ AACCTTTCGTACACGCAGTGCAAAATCATGGT 526312 28 100.0 32 ............................ AAAAGCAGTAGCTAATCGTGTGGCGGTATCAA 526252 28 100.0 32 ............................ ATAACTAAAATAAAGCACGGAAAAAATAACGA 526192 28 100.0 32 ............................ TTCCGTCATGGATAAATGCACAGCATTTATCC 526132 28 100.0 32 ............................ AGTAACCGTCGTCGACTGAGTAATAATCACCC 526072 28 100.0 32 ............................ AGTAACCGTCGTCGACTGAGTAATAATCACCC 526012 28 100.0 32 ............................ GACCCCGCTCATAGTGTTGATGATATTGACGA 525952 28 96.4 32 ..............C............. ACAAAATCAACAGCGGGACTAGCAACCACGCT 525892 28 100.0 32 ............................ ATTTAAACGCCCCAATAAATCACTGACAAAAA 525832 28 100.0 32 ............................ AAAAGTGGTAACTGGTAGCCGAAATCCTGTTC 525772 28 96.4 32 ............G............... ACTGAGTTGTATCGGTTGGGTGAACTGTAATA 525712 28 96.4 32 ............G............... GCGTGCTAGTTTGTCTGCTGTTGCTTTCAAGA 525652 27 85.7 0 ....................T..C-..T | ========== ====== ====== ====== ============================ ================================= ================== 39 28 99.4 32 GTTAACTGCCGTATAGGCAGCTTAGAAA # Left flank : CATACAGCGCAGATACCTATTTGCACCGTATTGGACGTACTGCACGCGCAGGTAAAAAAGGCGTAGCGGTGTCTTTTGTGGAAGCCCATGATTATAAATTGTTGGGTAAAATCAAACGTTACACCCAAGAATTACTGAAAGCACGTATTATCGAAGGCTTAGCTCCTCGCACCAAAGCACCGAAAGAGGGAGAAGTTAAAACGGTCAGTAAAAAGCAAAAAGCCCGCATTAAAGCAAAACGTGAAGAGAAGCAAAAACAAGAGCAAAAGAAAAAAGTGAAACTGCGTCATAAAGATACGAAAAATATTGGTAAACGTCGCAAATCCAATACACCTCCTGCTAACGCAGAATAATCACATCTAAATTGCTAACCCTTTTTTCTGGCTAGATTATTTATCTAATAAGATCAAAGGGTTATTTTTATGTCTAGAAAAAGGGTTTTTAACAGTTTGATCGGCGCCATACTTGCTGAATAAAGGGATGTCGATTAGACTGTTTTA # Right flank : TGACTGTTGGTATATTACTAAAACAGTTGGATATGGGGATCGGTCTGTTAGCTTATATCGTGTTTAACGATAAAAGTGCGGTCAATTTTTGGAAAATTTCATCAGCTTCAATCTTATCCATACTCTCAGCAACGAGATAATGCTGGTTTTTGCCGTAGGAGCCTATCAGTTTGGGATCCGTGGCACCATAGAGAGTCAAGTTGGTTTTATCGAGTGCGGCACTTAAATGTGCCAATCCGGTGTCAACAGAAACAACAGCGCTGGCATTCACAATCTGCTGTGCTAACTCGGATAACGTGGATTTTGGCAAAATCGTCACAAGATCAAGCCCTTGGGCGATCCTCTCTGCACGCTGTTTTTCTTGAGGATTTGACCAAGGTACGTGAATTTGGATACCCTGTGCGGTCAGTTTTTCTGCTAATATCCGCCATTGTCTGTCCGGTAGAAATTTATCTTGGCGTGTGGTGCCATGGAAAAAGAGGACATAGGGCATCGTTTGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTAACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 10967-12615 **** Predicted by CRISPRDetect 2.4 *** >NZ_LUDC01000005.1 Pasteurella multocida subsp. multocida strain ATCC 1662 ZB100004, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 10967 28 100.0 32 ............................ TTACGTTCTCCTGTTTCCTTGTCTTTATAATA 11027 28 100.0 32 ............................ TGCATTTGAAGCCAGTTGTTTTAGCGAACTTA 11087 28 100.0 33 ............................ TAGTACCTGCTTATCGAGGCGTGACTTCGCTAT 11148 28 100.0 32 ............................ TAATATTTTAATGTAGGTAATTAATAACGCTT 11208 28 100.0 32 ............................ TCCATACGAATTAATGAACCTGAAATTCTAAT 11268 28 100.0 32 ............................ AAATATTATTTTAAAGGTTATGGCAGGTCTTT 11328 28 100.0 32 ............................ TCGATAAGCAGGTACAAGGCTACCCTTGCCTA 11388 28 100.0 32 ............................ TGTTATGCCCTTTTCAAAAGCCCGAGGATTAA 11448 28 100.0 32 ............................ TGTTGATACCACCGTAACTCAAAACTCATTTT 11508 28 100.0 32 ............................ TTCATTTACACTCCTATCGAATATCAATACGT 11568 28 100.0 32 ............................ ATTGCCAACGGTTGAAGAAGTGCGCACTTGGT 11628 28 100.0 32 ............................ AAATTGCTCATAAACAACAAACCCCAGTCCTT 11688 28 100.0 32 ............................ ATTTTGATGATGGCAAAACAGCCATCACAGCT 11748 28 100.0 32 ............................ CTGCTAAGACCATTTAGATCTATTTTACTCAT 11808 28 100.0 32 ............................ ATCGACCCATTCATGGATTTCACTGGGTCTGG 11868 28 100.0 32 ............................ AAAATGGCAGTTTTATTTTCATTTCGCCACCG 11928 28 100.0 32 ............................ ATATCTGAAGCATTGAAATTACAAGGGAATGA 11988 28 100.0 32 ............................ GCTCATCAACGTGAGGGCGGCGGTAAATCCAG 12048 28 100.0 32 ............................ TTGACACAGCGTTTAGGTACTTTGCGTAACAT 12108 28 100.0 32 ............................ AGGAACAGATGAATTCAATGAGTATAAAAAAT 12168 28 100.0 32 ............................ GTGAATAGAACTAAACGCGTTTTTTCTGCGTT 12228 28 100.0 32 ............................ GTTTGATTTGCTTGTTGAAAAAGTGCTAGAAA 12288 28 100.0 32 ............................ TTCTGAATTGTTGCAATACGCAATACGAATGT 12348 28 100.0 32 ............................ GTGCCGAATCATGCTGGCGTTTATCTCGGTGA 12408 28 100.0 32 ............................ ACATCTTGTATGACAATCTCCTAACAAAGCCA 12468 28 100.0 32 ............................ CTTTTAATTCGGCGCGCATTGCTGTGATAGTC 12528 28 100.0 32 ............................ ATATTGCCAAGCACAAGCTGTCAATTGATGAA 12588 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================= ================== 28 28 99.9 32 GTTCACCATCGTGTAGATGGCTTAGAAA # Left flank : CAATTACACCAACAATTATTGCGATCTGGCTTATCAGATTATGCTTTAATTAGCGAAGTGAGTAAAACGCCGTTGCCTACCGAGCATCGCAGTTATAGTCGAGTACATCGTAAAGGGCAAAGTGCCATCCGCCGTACCGAAAAACGCTTGAAAAGTCAGGGAAGATGGGATGAGTCCATCCGTGCAGACATGCAACAACGTCAGCAAAATGTGGCATTTTTCCCACATTGTCATTTAAAAAGTGCGAGCACTGGTCAACGTTTTATTTTGGCAGTGAAAGAGAACAGAATGCCACAATCTTGTGTTGGTGTCTTTAATGCTTATGGATTAAGCAATAGCGCAACCGTGCCTCACTTTTAATCGCATTGTTAACCCTTTTTTCTTATTTGGAAAGTTTCCGAACAAGATCAAAGGGTTATTGTTCTACCCTAAAAAAGGGTTTTCTTTTCAGATGTTCTTTAACAAATTGAAATATCCGAAGATATAACAAAATTCATTTA # Right flank : AACTCATAATTGGAAGAGAGCGAGTTCGAATCGCTCATTATAGACTAGATTGTGTAAATCCTCGCCGGTTTTCAAGACCGGTGTATCCAATGCCGTTAAGCAACCTCATTTAAAGAACAGAAAAAGCCCATTATGCTTATCAGAGAATGGGCTAGATAAAAGGAGAGATTATGCGCAAAACCCCTTATATTCCGTCTTCGGATTTGAAAACCATTATGCATTCTAAGCGGGCGAATATTTACTATTTAGAACATTGTCGCGTATTACTAAATGGTGGACGAGTGGAATATGTCACCGATGAAGGGCGAGAATCGCTTTATTGGAATATTCCCATCGCCAATACGAGTTGTCTTTTGTTAGGCAGTGGTACGTCGATTACGCAAGCTGCGATGCGAGAATTATCCAAAGCGGGCGTCATGGTGGGGTTTTGTAGCGGAGGTGGTACACCATTGTTTAATGGCACAGAAGCCGAAATTGGCTGTGAGTTTTTTAGCCCACAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCATCGTGTAGATGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTCACCATCGTGTAGATGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.00,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //