Array 1 2332665-2333232 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP028368.1 Pseudomonas aeruginosa strain PA-VAP-4 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 2332665 28 100.0 32 ............................ TGGCCCAGCGTCACCTTGGCGATGGTCTCATC 2332725 28 100.0 32 ............................ AGTTCCATACGTTCTGGTTGAATCGCAGGAAA 2332785 28 100.0 32 ............................ TGGCTGAGCGGAACCTATATCTCAAAGGTGAA 2332845 28 100.0 32 ............................ ACAGCGGCTCGCCGTTGGCACCGAGTGCGGTC 2332905 28 100.0 32 ............................ GTCTGCACCGGGCACTCGCTCTGCCAGCCGTT 2332965 28 100.0 32 ............................ AATCTGGTCGACACGCGGAACCACCGTCTGCA 2333025 28 100.0 32 ............................ ACAGTCGGTCATCTTTCACGCGGCAAGTAATG 2333085 28 100.0 32 ............................ TAATCCTGACAGGCCCGGTTCGCAGCCAGTAG 2333145 28 100.0 32 ............................ AGCATCGAAGTCTGGCCGAACTTCCGCAATTC 2333205 28 96.4 0 ...........................G | ========== ====== ====== ====== ============================ ================================ ================== 10 28 99.6 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : TCCACAGTCCGTAGGGCGCATAACCGCTCGCGGTTATCCGCCGCTTATCCGCGACATCGGCGGATAACGCCCATGGCGCTATCCGCCCTACAGGCCCTGGAAACGCCGGACAGCTCACCCGGACATTTCCGCAGGCTCTCTCAGAAGCCCGGGAATTGGATAAAAACCCAGTAGGAGGATGATGGAGGGGCCGGCAAATCCATCCCGTAGGGACCGAACGGCACTGCCCTCTGTTTTTTGAGGGCAAAAAAGACGCGGGCCGCAGGTGCGGGAACACCCGAAGCCCGCTAACCACAAACCAGCTTACATAAGGAGCTGACCCATGGCTAAGCCGAATGATACGTCCAACCCCGAGGTAACAGAATCGTCCCCCCGCTTCGTCCCGCTGCTACCCACCTCCCAGGCCGACATGTGTCCGCGTAGCGCCACNAAAGAGGGTCTCTGGCAGGAAAGACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : GTCGCGAGCGATATAGTCCCGTAGGGCGGATAACGCCACGGGCGTTATCCGCCGATGTCACGGAAAGCGGCGGATAACCGCAAGCGGTTATTCGCCCTACGGATCAGGACTTCGGAATGAACTCTTCTCTCAGGCTCATAGCGTCTCTCGTGGTCTCTCTCCGGCAACTCCGCACACCTGTCAGCCACGTCTCCGGTCCGTACAGACGCTTGCAAAAGGGACTGGCCTGGGAGAGCGAAACGAGAAGCCGAGGCAGGCAAGGAAATCAGCTTGCCCAGCACATTCAGACTCAAGACCACGAGGGCAGAAAACTGCCAGCCTCAGGCCGGCAACAACGGCCGACAGGCTTCGACGAAGCGCCGGCAGGCACCCGCACATTCGCGCTCCAGCGGCTCGTCGCCATCGCAACGCGATGCGCATGCCAGGGCATAGCGCGCCGCCAGCTCGCAGGCGGCCGGCGCCCATGGGCTGCGGCGCTCCAGCAGCAGGGCAGCGAGGCG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 4948117-4948264 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP028368.1 Pseudomonas aeruginosa strain PA-VAP-4 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 4948117 28 100.0 32 ............................ TGGCCCAGCGTCACCTTGGCGATGGTCTCATC 4948177 28 100.0 32 ............................ AGTTCCATACGTTCTGGTTGAATCGCAGGAAA 4948237 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 3 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCGTGCACTTGTTCGACAACGCGAAAGGGCGCTTGAGGTCGGCAATCAATGTCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCCGGCGCGACGCCCTCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCACGGTTGATCGCCGTCCCGGTCCTCGCGAAACGACCTCCAATTGCCTGAAACTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGTAAGTTAGGAGGCCTCGAAAAAAGAGGGTCTCTGGCAGGAAAGACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : ACAGGTGTCAGCCNTCGCCCTCGAACGGCGCGGTTGACCGACGTCCCGGTCCTCGCGAAACGGCCTCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGTAAGTTAGGAGGCCTCGAAAAAAGAGGGTCTCTGGCAGGAAAGACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTAGTTCACTGCCGTGTAGGCAGCTAAGAAACAGGTGTCAGCCAGCGTCAAGCAGCGGAACTAGTTCACTGCCGTGTAGGCAGCTAAGAAATTGGCGGAAGTGGATTGCTCACCATATAGCCGGTTCACTGCCGTGTAGGCAGCTAAGAAAACCTCCCGCCTTCCTGGCCTTTAGCATGGCGTGTTCACTGCCGTGTAGGCAGCTAAGAAAATGATGCCCAGCTTGATGGCCTGGACTACCTGGTTCACTGCCGTGTAGGCAGCTAAGAAATTTCACGCCTGCCATT # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [60.0-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 4948480-4949528 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP028368.1 Pseudomonas aeruginosa strain PA-VAP-4 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 4948480 28 100.0 32 ............................ CAGGTGTCAGCCAGCGTCAAGCAGCGGAACTA 4948540 28 100.0 32 ............................ TTGGCGGAAGTGGATTGCTCACCATATAGCCG 4948600 28 100.0 32 ............................ ACCTCCCGCCTTCCTGGCCTTTAGCATGGCGT 4948660 28 100.0 32 ............................ ATGATGCCCAGCTTGATGGCCTGGACTACCTG 4948720 28 100.0 32 ............................ TTTCACGCCTGCCATTTGCTGAATTCCAAATC 4948780 28 100.0 32 ............................ TGGAAAAGGCCAAGGTCAGCCAGTCGGACATG 4948840 28 100.0 32 ............................ GCGCCAAGCGCCAACTGCGCAAATGCTGAAAA 4948900 28 100.0 32 ............................ TCGCTCAATCGCCGTCGCCGGGTCAACTGACG 4948960 28 100.0 32 ............................ CGGCAGAAAAACGGATCGGTCGCGACTTCGAA 4949020 28 100.0 32 ............................ TATGATCATGCCCCGTCCTCTGGCTCAAACAC 4949080 28 100.0 32 ............................ ACTTGCAGCGCCGCCGCGTCGTCTTGCATGCG 4949140 28 100.0 33 ............................ TACCCGGACATTAGACGAAAACTGCGTTCCGGT 4949201 28 100.0 32 ............................ ACCACCAGGCCCGCGGTATCACCCGTCTCGGC 4949261 28 100.0 32 ............................ TCGCGGTGACGGGCATGACGGGCGCTGGCAAG 4949321 28 100.0 32 ............................ ATCGCCGCACGGCTCGCGCGATCGTATGTACT 4949381 28 100.0 32 ............................ AGCCGGCAACGGAAACATCGTGCTGGCCGCGC 4949441 28 100.0 32 ............................ ATGAACACTGAACTTGCACCCGTTGAAATCTA 4949501 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 18 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGTAAGTTAGGAGGCCTCGAAAAAAGAGGGTCTCTGGCAGGAAAGACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTAGTTCACTGCCGTGTAGGCAGCTAAGAAATGGCCCAGCGTCACCTTGGCGATGGTCTCATCGTTCACTGCCGTGTAGGCAGCTAAGAAAAGTTCCATACGTTCTGGTTGAATCGCAGGAAAGTTCACTGCCGTGTAGGCAGCTAAGAAACAGGTGTCAGCCNTCGCCCTCGAACGGCGCGGTTGACCGACGTCCCGGTCCTCGCGAAACGGCCTCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGTAAGTTAGGAGGCCTCGAAAAAAGAGGGTCTCTGGCAGGAAAGACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : ACTCGAACCCACCTCGGCCACAACAGCCGCCGGTTTCACTGCCGTCTAGGCAGAACCACCCTCCCCATCCCGCTACCAAACATCCGAATATAAAGTTCCTACCCCACCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCCTGGAAGCTCACGCTCCTCATACAGACGCAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGTATTCGATAGATCCGATAGGGACAGGCCACGGTCAGCATGGACGACATCTCCCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGATGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [60.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 4 4959266-4958458 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP028368.1 Pseudomonas aeruginosa strain PA-VAP-4 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 4959265 28 100.0 32 ............................ TGGAGCTGAATCAGGACATCAGCCTGGCAGCG 4959205 28 100.0 32 ............................ AAGAGGCGTTGGAGGAGTATTGGCGCGTCCTG 4959145 28 100.0 32 ............................ TTGAAAGCCGCCCGCAAGCAGGCGGGCCTGAC 4959085 28 100.0 32 ............................ TACACCCTCGACGCCATCGGCACTCGGCAATA 4959025 28 100.0 32 ............................ ATCGATTACCGCTTCAACAACAACGTGACGGT 4958965 28 100.0 32 ............................ ATCATGCTGATGGATCACCACGACCGCCGTTT 4958905 28 100.0 32 ............................ CGACCGCTTCGCGCGTACCGCCGGCTGCGTCA 4958845 28 100.0 32 ............................ ACTGCGCGGTGAAGGCCTGGCCGCCTGCGGAC 4958785 28 100.0 32 ............................ ATATCGCTACTAGCCGAACGCATAGATACCTC 4958725 28 96.4 32 ................T........... GCGCAGAGCAGCGCCGGCCAGGTCCAGCAGGA 4958665 28 100.0 32 ............................ GAGCAGGTCGGGAAACTCCTGAACTGCGAGGA 4958605 28 100.0 32 ............................ TTACCTTTAAAAGGCTTTAAAAGGCCTTTTAG 4958545 28 92.9 32 .....................A..A... TGTCCCGAAGTTCATAAGCGGGCTTCGGGCGA 4958485 28 78.6 0 T.........AC.....TC..C...... | ========== ====== ====== ====== ============================ ================================ ================== 14 28 97.7 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATGGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGGTTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGGTCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGCCGCTGGAGCCCTTGGAACTTGGAAGGTTGATGGGTTTTTGGTCTA # Right flank : CGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTCTCGGCCGGGGCCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATAAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGAAACCTCCTTTGCTCAACCCGTAACAGGTGAACCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGCTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGGTCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGCTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCTTCCGCCG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //