Array 1 429689-430997 **** Predicted by CRISPRDetect 2.4 *** >NZ_WPLP01000002.1 Salmonella sp. S062_01370 NODE_2_length_475770_cov_250.893, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 429689 29 100.0 32 ............................. GGCCAGCCGAGGTCTTCGGAAACATACCCATC 429750 29 100.0 32 ............................. CCGCTCTGAATAGTTGACCACTCAGACCACGC 429811 29 100.0 32 ............................. CAGCCGGACGGCACAGGGTTAACCGATATTTA 429872 29 100.0 32 ............................. ACACCCGTCGGGGGAAGCAAGGCGGACGGGAC 429933 29 100.0 32 ............................. GATAGCGCCTCGCCCACAGTTGCAGTGTTTGC 429994 29 100.0 32 ............................. GCCCCGCGTCTGTTTTGGCTCGTCGGGCCAAT 430055 29 100.0 32 ............................. GGCGTGCGCACTCAGTGCGTACTGGACGCATT 430116 29 100.0 32 ............................. CCCCCTCTCATTAAATATTTGGCGTAATCACG 430177 29 100.0 32 ............................. ACAATGTGTGCTCGTCCCATACGCGTTTGCTG 430238 29 100.0 32 ............................. CGTCAGCGCGGCATTGAGGCTGGGGACCGCCC 430299 29 100.0 32 ............................. AAAAAATCTGGACCCGTCACGCCTGATTAATA 430360 29 100.0 32 ............................. ACGTTATGGTTATCCATGAGGTTGCACGCGAG 430421 29 100.0 32 ............................. TAATCGCGTGCTTGGATTGTGGCGCATCCTCC 430482 29 100.0 32 ............................. AGATAAAATCAGAAATTTACGCCGAACTTCAA 430543 29 100.0 32 ............................. AATCCGTCGCTGCTGGTCGTCGGCAAGAACAA 430604 29 100.0 32 ............................. CTGGACTGATCAGGCTGGAAATTGGTCAGATA 430665 29 100.0 32 ............................. CCTGATTAATCGGGGGATGTAATGGCAAACGA 430726 29 100.0 32 ............................. TATTCAGCGTCAGATGAGCCTATGTCGCAACG 430787 29 100.0 33 ............................. CGCCCTTTCATCCGTTCAGGTGGATTTCATGAC 430849 29 100.0 31 ............................. ATGTTTAATTTTGTAGCCGCTACCTATCGCC 430909 29 100.0 32 ............................. GTCACGAGGTCTGACGCGGATGTGATGAGTTA 430970 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 22 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCATTACTAATCTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 447280-448653 **** Predicted by CRISPRDetect 2.4 *** >NZ_WPLP01000002.1 Salmonella sp. S062_01370 NODE_2_length_475770_cov_250.893, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 447280 29 100.0 32 ............................. CTCAAAATATTCTCTTGATTTTAAACATTGAG 447341 29 100.0 32 ............................. ACGCCCCTTTTTCAGGTGTTGATATTGCCGGG 447402 29 100.0 32 ............................. ACGAGCGAGCCGGCATCCGTGAGGCCCGTGTC 447463 29 100.0 33 ............................. ACTACATAGATAACCAAAAATCCACTGGCAAGC 447525 29 100.0 32 ............................. TCTATCTTCAAATTGTTCTGATGGTGGAAACG 447586 29 100.0 32 ............................. TATCGTTCCACTGGTTCATCAGCGTCCAGTTG 447647 29 100.0 32 ............................. TGCCTGGACACTGTTGCGTCAGCGGGAATACA 447708 29 100.0 32 ............................. TTGCGCTGTTCTATTGGCGGCAATTCTCTGAA 447769 29 100.0 32 ............................. GGACAGCACAGTTGATTACAGCAAAATTTACG 447830 29 96.6 32 ............T................ ACACGCCAGCCAACAATATTAATTTTGTCGTC 447891 29 100.0 32 ............................. CCTTGGCGGCAGCCACCTGAGCAACTGTCGGG 447952 29 100.0 32 ............................. CAGCTTCTTAACGAGGAGATTAACAGCGACGT 448013 29 100.0 32 ............................. TTAATGCGGTCATTGGTCATGTCTCTAAAAGA 448074 29 100.0 32 ............................. ACTGTAGTTGCGGGTCAGGTTCCGGAATATCA 448135 29 100.0 33 ............................. GGATAGGGATCGGTAACTTTGCCATCGATCGGC 448197 29 100.0 32 ............................. AGTATTGCAACTACGGCTGACGCGCTGATCGA 448258 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 448319 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 448380 29 100.0 32 ............................. CACCCAGCGGGTAAACTGATCAGCAGCAGCAC 448441 29 100.0 32 ............................. AACCCTCAGAAAATAATCCAGACGTTACCGAA 448502 29 100.0 32 ............................. GCAGAAACAGAAACCGGATATGAGCCATCCAT 448563 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 448624 29 93.1 0 A..............A............. | A [448650] ========== ====== ====== ====== ============================= ================================= ================== 23 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAATCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCTCCCTGGCAGCGCTTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGAAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //