Array 1 18273-16851 **** Predicted by CRISPRDetect 2.4 *** >NZ_APUX01000113.1 Neisseria meningitidis NM3158 gnm3158.contig.112, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 18272 36 97.2 30 ........G........................... GTTTCTTCCCATATACTGCTGTTCAAACCG 18206 36 100.0 30 .................................... CTTCCGTGAGATACATTTCCCAATCTTCTT 18140 36 100.0 30 .................................... TGATTTGCTCGACAGGTGAATAGCCATAAA 18074 36 100.0 30 .................................... AATTTAATACGGCGACCATCTCGTGCCAAG 18008 36 100.0 30 .................................... TCATCAATCGCCCACTCAAACCCAAGCATA 17942 36 100.0 30 .................................... ACGGCGGTGGAAACGGTTTTCATAAAATTT 17876 36 100.0 30 .................................... GCCTCACAAATATCGTCAATGCTTGCGCGA 17810 36 100.0 30 .................................... TGCCACTTGATGTTTTAGCCATAGTGTTCT 17744 36 100.0 30 .................................... TGCGAAGCGAACACCCTGAACAATGCCGAC 17678 36 100.0 30 .................................... CCGCAAAGCAGCCGAAAAAGCCGACAGGAA 17612 36 100.0 30 .................................... CATGCCGTCGGGCGGTGTTGTAAATTTTAA 17546 36 100.0 30 .................................... TGACAAATAAAGCACGATTGTTGCAAAAGG 17480 36 100.0 30 .................................... CCAACGGATAAAATTACGCCCAAGCACCTG 17414 36 100.0 30 .................................... GTATTGAGCGTCAAGTACTCGCCATTCGAG 17348 36 100.0 30 .................................... TGAAGGTTCGATAATTCGACCTGAAAAACG 17282 36 100.0 30 .................................... TCACTCTAAAAATCCGATTCTACCACCGCT 17216 36 100.0 30 .................................... TTGGCTCGTCTGCTGCCGTCAATCGTGCGC 17150 36 100.0 30 .................................... TAGATTGCCTCATATACGCCGAGCGGGTAG 17084 36 100.0 30 .................................... CAGGTCGTGCTGGAGCAGGCCGACGATTTT 17018 36 100.0 30 .................................... CATACAGTTCATCTTCACCTGCAATCAGGG 16952 36 100.0 30 .................................... TGCTAAGGTTTAATTGGCATTTTCTTTTAA 16886 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 22 36 99.9 30 GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Left flank : GAAACGGTCGATGTGTTTGGCAATCATGGCTTTGTGCGGTTTGCTGAAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : ACCCCAACGGGAAATCCTTATTCTATAAGGATTTCCCGTTTTATTTAGTCTGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACATAGTCTATTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGCTGGAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATCGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACACCGGCTTGAAATGACGAAACCATTTTGTCGATGGCAGCCAAGGTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //