Array 1 98974-97617 **** Predicted by CRISPRDetect 2.4 *** >NZ_QFAS01000001.1 Ligilactobacillus salivarius strain A3iob _Contig_001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================================================================= ================== 98973 36 100.0 30 .................................... ACCCATTTATTGAGTGTTCCCTGACTGATT 98907 36 100.0 30 .................................... ATTGATCCTTGCGCCGGAAGTGGTAGCACG 98841 36 100.0 30 .................................... AAGGCAATACGTATCTCATTGAAGAACATA 98775 36 100.0 30 .................................... TAATAGGTTGGGTTGCTGATAATGAACGTA 98709 36 100.0 30 .................................... GTTCTTCATCATTACTACGCATTGCAATTT 98643 36 100.0 30 .................................... TAAAAGACTACACACGTGAACCACTTAGAA 98577 36 100.0 30 .................................... GATACAAATGGAGAAAGTCGCAAGTTATTT 98511 36 100.0 30 .................................... TTAAAGGTGCTATATATGAATTGACACATA 98445 36 100.0 30 .................................... TGAGTGGATTAATGACTGGGTAACTGCTAG 98379 36 100.0 30 .................................... TATGCTATAATGAATATATTCAAGTCTAAA 98313 36 97.2 30 ........................A........... ACGTGGTGGGGATAGAATGCCACCAGTTAA 98247 36 97.2 30 ........................A........... TTGCGACTTTATACGTCCGTCTTGCTGCGT 98181 36 97.2 30 ........................A........... TAAATCGGTTCTCGATACAGCCTTGCCAAT 98115 36 97.2 30 ........................A........... AGTGGCAGTATCAAGGCAATCGAAGAAAGA 98049 36 97.2 30 ........................A........... GACATTTGTAAAATATGCACTCAAAGGCTA 97983 36 97.2 30 ........................A........... TATACCTAGTGAATTATCCTATATACCGCT 97917 36 97.2 30 ........................A........... AATTCTTTATTACAAGTTAGATGGAGATGC 97851 36 91.7 30 ........................A.........AT GGTTCTGAGCCTAGTTAGAATGACATAGGT 97785 36 83.3 97 ..........A..A......T......A....T.T. TTAATTAGATTAATATCTTGACTTTGTCTCCACAGTTATATATTCTAATTTCAGAATATATTAATTGACTGTTTTAGAGTGGTTAGTTTAGGTATTA 97652 36 80.6 0 ..........A.........T...AG...CG..G.. | ========== ====== ====== ====== ==================================== ================================================================================================= ================== 20 36 96.8 34 GTTTCAGAAGTATGTTAAATCAATTAGGTTAAGACC # Left flank : AACAGACCGAATTAGTAAAAAGTATATGAATGTATTGATCAAAAAGATTATTGAAGACATCACGGATGATGAAAGACAAGCAATACTAAAATCAGTAAATGGTTTGTATGATCGTATTCGAGAGGTTTTGTATAAAATTGATATACCCTTACAAGTAGATTATGATAATGATTTAACAAGACTATTCAAGTATTGTCAGGTACATACAGAGGCATTGCTATGGAAAAATGCGTATGATAGAATATCTTCAGATGTTAAATTACATGTGGAACTAAACAGAGAAAGAATTATAGGTCTAACCAATGTCGCACATTATCTCACTAAAGAAGAGTTTCAGGAACTTGTGAACCTTGTTAAGGCGACTAACGCATCAATGTTTATAATTGAATTCACAGAAAAGAATGGTCAGAGATTCTTTGAAAACTGTGATAATTACTATATTGATGAGGATTATATTGATTGGTACTAACGAATAGTTAAATTTTGATTATAAAGTAACT # Right flank : TAAAATACAAAATATTTCATAATATTTATAAATCTATCAGAAATTTTCTGGTAGATTTTTTTAGTGTAAAAATTTTTGAGTTTAAGATATATTATGGTTGATAACGTAATATTATATGATATATAATATAGTTGAAGATAAGATATAAAAGAAAGTGAGGGATGATGATGAAAATTCAAGTTAGTTCTGATTTACTAGATGGTTTAGTATTAGCGCTTTTAGATAAGCAAGATTATTATGGATACTCATTGACACAGGATATGCAAAGAGCAATTTCAATTTCAGAATCAACACTCTACCCAGTATTACGCAGGTTAAAGAATAATGGTTTATTAGAAACATATGATCAATCATATCAAGGGAGAAATCGTAGATATTATCGCATAACAAATAGTGGGGAAGAACATTTAGGAAGAGTTAAAAAAATGTGGAGTGATTATAAAGTTAGTTTGGATTCAATTTTCGAAAAAACTAGAGAGGGGGAATAGTAATGAACTCAG # Questionable array : NO Score: 5.63 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:-0.26, 8:1, 9:0.80, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGAAGTATGTTAAATCAATTAGGTTAAGACC # Alternate repeat : GTTTCAGAAGTATGTTAAATCAATAAGGTTAAGACC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.10] Score: 0/0.37 # Array degeneracy analysis prediction: R [16-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [85.0-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA //