Array 1 171497-173111 **** Predicted by CRISPRDetect 2.4 *** >NZ_MWNX01000057.1 Salmonella enterica subsp. enterica serovar Weltevreden strain CNGD2016016 scaffold4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 171497 29 100.0 32 ............................. GTTCGCCCGGTATCCTCGCCAGTCCGCGACCT 171558 29 100.0 32 ............................. GGCGCCCATGAGGTATCCCGACAGGAGCACGA 171619 29 100.0 32 ............................. CCAGCGTCATGCTCTGCTCGTTGTTCCGGCGT 171680 29 100.0 32 ............................. CAGGAGACGACATAATACGTGGTGACTTTTGG 171741 29 100.0 32 ............................. GTCAGGGCGTTGATCGTCCAGTCCCGGTCCTC 171802 29 100.0 32 ............................. ATTAAATAATCATTTACCATATTGCAGGTACA 171863 29 100.0 32 ............................. ACCGGGGCCACGACTTACGTCAGCGCGCCGAT 171924 29 100.0 32 ............................. GCGGCTGCTATTCCGGGGTGGGAGGCCGGCGC 171985 29 100.0 32 ............................. ACCTGACATATTCTGCGGGCGGCAGTAAATAC 172046 29 100.0 32 ............................. GCGTTTTCCAGGCGTTGCGTTACGAGCGCGAT 172107 29 100.0 32 ............................. AAAAAATCCTTCCTTGTGGCTGTGCTGCTGGC 172168 29 100.0 32 ............................. GCAACTGGAACAACGATAGCGGGCAACTGGTT 172229 29 100.0 32 ............................. AGTTATGTTGAGTTCCGGGATTTCAATATCAG 172290 29 100.0 32 ............................. ATTATATAAAAGGCGGCGGCAATGACGGAGGT 172351 29 100.0 32 ............................. ACCACAACATCATTCAAACCGTATAACTACTG 172412 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 172473 29 100.0 32 ............................. AAAAAAGGAACACACATGGCCTTAGAAGATGA 172534 29 100.0 32 ............................. CGACGCGCTGGGGCGACTGGTTTTCACCGAGC 172595 29 96.6 33 ...........................T. GGTTAACACTGACCCGGCTGCGGTCGTCGCAGC 172657 29 100.0 32 ............................. ACCGCGTGCGCATGGACATTGCCCGCTGGGAT 172718 29 100.0 32 ............................. GTAAAAAGCCGGTTATGCGCAATAATCAATTC 172779 29 100.0 32 ............................. CTACTTGGCGTGATGCGCTGCCGAAAATTTTG 172840 29 100.0 32 ............................. CGCGTGAAAAATTGCGTTACCGCCTGGGTGAG 172901 29 100.0 32 ............................. CGCCTGGCAAATTTCACCGTTAACACGCTGAG 172962 29 100.0 32 ............................. CCGGTACGCGAGGGGATTAACCTCCGGGCCGA 173023 29 100.0 32 ............................. TCTCCAGACTCACCGATATAACCCCCTGGCAC 173084 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTACAGCCTATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACCCATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAATAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTTGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGACAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCTCTGCCGATTGG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 189619-192149 **** Predicted by CRISPRDetect 2.4 *** >NZ_MWNX01000057.1 Salmonella enterica subsp. enterica serovar Weltevreden strain CNGD2016016 scaffold4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 189619 29 100.0 32 ............................. CGGTACGAAAATTTTTCATTTTTTATCCTCTG 189680 29 100.0 32 ............................. CCCCCTCCCCTACTCCGCGCCGGAAAAAAAAC 189741 29 100.0 32 ............................. TTCTTTTCGTGCGTCGCCCAGCGTTTGTGGCA 189802 29 100.0 32 ............................. GCGGCAAAAGCTGTCAGCGATTTTTTCAGTGA 189863 29 100.0 32 ............................. GAAGCGCCGCTGGGGCTGGTGGCGGCAGGGTT 189924 29 100.0 32 ............................. TCGTTTTTCTTATCGGTGTGGTTCGGTCGTAA 189985 29 96.6 32 A............................ CCCGCATTTCTCGGTGATCGACTTTGTAACCT 190046 29 100.0 32 ............................. GCGCAGCCCTCAAACCCACAACATACGACGAT 190107 29 100.0 32 ............................. CCAAAGAGCTGACATTGCTAGACCCTCATATT 190168 29 100.0 32 ............................. AAGGGCGGATCACTCTACGTCAGCACGTCATT 190229 29 100.0 32 ............................. AATGCGACAACTCGTCTACTGGTCACAAAAGG 190290 29 100.0 32 ............................. TGTTTTCCGCCGCGTCGCAACTCATGACAGCG 190351 29 100.0 32 ............................. TGGATGATTCCGTTTATCAGGAGTTCGCTGCG 190412 29 100.0 32 ............................. TTTAAGATACTGGTCGCCGCGACCGCTCATGG 190473 29 100.0 32 ............................. CCATATAGCCCCCTCTTATATGGCGTATGAAA 190534 29 100.0 32 ............................. GCGGGTGAAGTTACCTCCGAGGGCTTTCACGA 190595 29 100.0 32 ............................. CCGTGACAGACGGCGCTTTAACGCCCGGTGGT 190656 29 100.0 32 ............................. GCCCCGGTCATGAATTGCCAGCGCCGCCACCA 190717 29 100.0 32 ............................. CATTGGTATGCCGTCGAATTCAACACGCGTAG 190778 29 100.0 32 ............................. CGTTCGCGAGGAATACTGCCAGTACCGAATTT 190839 29 100.0 32 ............................. GTGTGGTGGCCAATGGCAATTAATAACAGAAA 190900 29 100.0 32 ............................. GCAGCGAGACCACGAAAGAGGGAATACCGACA 190961 29 100.0 32 ............................. GTGTGCGTGATGAGGTTCGCGGAGCATGTTCT 191022 29 100.0 32 ............................. AGCCCCTTTCTGATTTTTTCCGTAATGTCGGT 191083 29 100.0 32 ............................. CCATGTTTGATTGTGCGGATTGACCAAAAGCC 191144 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 191205 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 191266 29 100.0 32 ............................. GGCAGATTTACGACAACAACCCGGCAGCGGTG 191327 29 100.0 32 ............................. CGAATTACTACCGGGCTAACACAAGTGGTAAG 191388 29 100.0 32 ............................. GAATTGTTGCTACGACTAAACAGGGAGGGAGC 191449 29 100.0 32 ............................. AAATTAGATGATCTGGACAACTGCCCGCAATG 191510 29 100.0 32 ............................. ACTCAGGCGGAGAACTGGCCGCATTAACTGTT 191571 29 100.0 32 ............................. CTGGGTGTCCAGCGGACATCCTCAGCCGGCGG 191632 29 100.0 32 ............................. AGATAGCGTGAGGCAATTCTTAGCGTTGAACT 191693 29 100.0 32 ............................. GGAGGTTGCACCTGAGCGCCCCTTCACTGGAC 191754 29 100.0 32 ............................. CCAGCAGCTTGCGGAAAAGATTCGCACTGCCT 191815 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 191876 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 191937 29 100.0 32 ............................. GCTAAAACGGCGCTTGAGAACAGTATCAATAT 191998 29 96.6 32 ..........T.................. GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 192059 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 192120 29 93.1 0 A...........T................ | A [192146] ========== ====== ====== ====== ============================= ================================ ================== 42 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGTCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCGTCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //