Array 1 389158-386787 **** Predicted by CRISPRDetect 2.4 *** >NZ_VOUP01000003.1 Serratia ureilytica strain S17 NODE_3_length_510293_cov_63.633922, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 389157 28 100.0 32 ............................ AGGAGTAATCAATGGAAAGCGAACTGATCATC 389097 28 100.0 32 ............................ AGCAGCTTTTCTGCCGCTCCCAATGATCGCCC 389037 28 100.0 32 ............................ AACGGCAGCAAAACCACAGTGGGCTGGATGCA 388977 28 100.0 32 ............................ CCGACAACCTGAAGTCCTGCAACTTTGTAAGA 388917 28 100.0 32 ............................ TGAGCTCGTCAGGGCTGGTTTCGTGAGTTCGT 388857 28 100.0 32 ............................ AGGAATTGAGCCGCCAAGTCCTTCACCTTCTT 388797 28 100.0 32 ............................ TCAGCCAACAGCGACACACTCCATGGCATCCT 388737 28 100.0 33 ............................ AGGCGAAAGTCGCAGGCGAGCAGGAAGGGGATG 388676 28 100.0 32 ............................ GAATGGGCATAAACCATGCCCTGGTGCATCCA 388616 28 100.0 32 ............................ AGGAAATTCTGTGATACGGCTACCGCAACTCC 388556 28 100.0 32 ............................ AAACCCGCTGACGCGTACCGGCGTTTCCGGGG 388496 28 100.0 32 ............................ AGCGAGTGCCTACTGCTGCGTCAAAAAATGGA 388436 28 100.0 32 ............................ ACCGGCCGTACACTTTCACGAGCATGGTGTAA 388376 28 100.0 32 ............................ GGTGGCACAGGTTGACCGTCGCCCAGCAGCAA 388316 28 100.0 32 ............................ TGTCCAAGATCTGCCCAACCTTAGAGCCACAA 388256 28 100.0 32 ............................ TGAAGCGCTTCGATTATGACAATGACGATCCT 388196 28 96.4 32 .................G.......... CGCACCCACTGAATCAGGCAGTCATCGCGCAA 388136 28 100.0 32 ............................ TTCGAAAATCAGGCGGTCAGCAGCCCATACGC 388076 28 100.0 32 ............................ TTGCGGCGTTGTGCTGCATTCATCGTGTAACC 388016 28 96.4 32 C........................... CGGATGTGACCGAGTTGCAGACCTCGGTCACG 387956 28 100.0 32 ............................ ACTCGAGCGTCTCGGTGATGCCGCCGGTCCAG 387896 28 100.0 32 ............................ AATCACCTTTCAGCACGCCGGTAGGGCAGCCA 387836 28 100.0 32 ............................ TGAGTTTTCTCTCCGCGCAGATATTTTTGGAC 387776 28 100.0 32 ............................ ATTGACGTTGTTGGGATTGGTTAGCGTGATTC 387716 28 100.0 32 ............................ GTCATCAAGAACATCATCACCTGATTGCTCTG 387656 28 100.0 32 ............................ AACCAGGACGAGTTCCTCGCGGACGACACAGG 387596 28 100.0 32 ............................ ATGATAGCACCGAAGCAACGGAAGCCCTGAAT 387536 28 100.0 32 ............................ AGCGTGTCCCGCAGTTGGCGTTCAGATACGTC 387476 28 100.0 33 ............................ CCACCCGCGCCCGGCAACGGTGAAAGTGCTGCA 387415 28 96.4 32 ............A............... TTTGCGACCGTCGTCACTATGTCCCCGAGTGT 387355 28 92.9 32 ..........A.A............... GCGCAGCTGATCCACGCCGTTCACGCGGCGAA 387295 28 96.4 33 ............A............... TTTTGCAGGTACTTCACCGGCGTGAACGTTTCA 387234 28 96.4 32 ............A............... GCTCCGGAAGTGCCGGAACCGTAGCGAAAGCG 387174 28 96.4 32 ............A............... ACGACGTCGGCGGCGGCTGCCGTACAGCACCA 387114 28 96.4 32 ............A............... AGGTGCGGCGGGTCGAACACGACAACAGAGAA 387054 28 96.4 33 ............A............... CGTTAAGCAGCCATTCAGGACTACAACCCAGCA 386993 28 96.4 32 ............A............... CAGACGGAACATGGCTGGATAAAGAAGACGTG 386933 28 96.4 32 ............A............... ATTATCCGCAGGGATTGGCCTCTACTGCCTCG 386873 28 96.4 32 ............A............... TTCGGCGGCCGGCCGCGAGCGTCTTGCCATCA 386813 27 82.1 0 ............CC......T..-...T | ========== ====== ====== ====== ============================ ================================= ================== 40 28 98.4 32 GTTCACTGCCGTGTAGGCAGCTTAGAAA # Left flank : ATGCGCTGACGGCGCTGGGGGGATTCGACTGGCTTAAAGGACTGCGGGACTATACCGACCTATCGCTCATCCAGGCGGTGCCTGCTGAGACGGCGTTTCGTACCGTCAGCAGAGTTCAGGTAAAGAGTAACGTAGAGCGTATACGCCGCCGGGCCGTCAATAAAGGTTGGCTGACTGAAGAACAGGCACGGGAAAGAATACCGATGGCGAACGAGCAGCGAACCTCATTGCCCTTTATTGCCTTGAAAAGTCTCTCCACCGGACAACATTTTCGCTTGTTCGTGAAACAGGGCCAATTACAGGAAAAACCAACGCCGGGCGTTTTTAGTTTCTATGGGCTGAGCGCGTCCGCTACGGTGCCTTGGTTTTAACCCTTTTTTTCGTTCAGAGGTAACACATTGATTTTGTTGCCTCTGAACGGTATCTGAAAAATTAGGGTTAAACCGAGGTCTTTGCCTGTTGTTCTTTAATAATCAGATCGTTAGTGAATTTTTTGTTCT # Right flank : AGTAGGGATAAAACTTTACCGACACCTGTTAACCAGTAAGCAAATACGCCAACGACAGCGGCGGGTGATTCACCAGCCGCTCTTTTTGTATTTTGCTCAGCTGTTTGACGCGGTATTCCAGCTTCAGCGCCGTTGAGCGATCCCCCACCTGGCAGTGAAACGCCAGCGTCAGCTCCCCTTTACCACGCAGCGCCTTGGCGCCTTTGCCGGCTTGATGTTGCGCCAGGCGGCGCGCCACGTCGGTGGTGATGCCGGTATACAGCATGCCGCTCGGTAAACGCAGCATGTAGAGGTGCCAGGGAGTGGGGGTAGTGTCGGTCATCGTACGCCGTTTCGGTGGCCAGGGTCGGCGTATGATGGCATGTTCGCCGTCACAATCCCATCCCCGGCCGCCGGAGCCTTACCGCTTTACCCCTTTTTTCCCGCCAGCTCGAAGCGCGGCGAGACAATGCCGTACAGCGTCCAGCCGAGGAAGGTGGCGATGGCGCCCCACATCATCG # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 399585-397633 **** Predicted by CRISPRDetect 2.4 *** >NZ_VOUP01000003.1 Serratia ureilytica strain S17 NODE_3_length_510293_cov_63.633922, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 399584 28 100.0 32 ............................ TGAGTGCGCAGAGAGTCGGCTGTAGCGCCAAA 399524 28 100.0 32 ............................ GGATGTTATGGTAACAATTCGTTTGGCACGTG 399464 28 100.0 32 ............................ TCCGACAGGCGCTTCGCCGGCTCACGCTTTTT 399404 28 100.0 33 ............................ CATGCCGCCAGCGCGATCACGGTCGCGCTCATG 399343 28 100.0 32 ............................ ACAGCAACTCAGCGCGCTACAAACGTTGTGGC 399283 28 100.0 33 ............................ ACATCGACCTCTTGCGCAAAGGCGGTGATGTAG 399222 28 100.0 33 ............................ CAAAGCGGGCGCGGTGGAGGCAAGGCACTTCGG 399161 28 100.0 32 ............................ AGAAGACGATTGCAGCTGCTGAGGCTCAGCGC 399101 28 100.0 32 ............................ CAGAAGATTTCAACTGGTCGGCTCCGGTCATG 399041 28 100.0 32 ............................ ACCAGTCCCCCTTTGCTCTGCCAGCGGCTCAC 398981 28 100.0 32 ............................ AGCGAACGGATCGAGTGGTCAGGGGATATGTT 398921 28 100.0 32 ............................ AAAGGCAAGTTCAGCGCCGAATGGTTGCTTCA 398861 28 100.0 32 ............................ TGTATCCGGGGCCGGAGTCGGAACCCATCATC 398801 28 100.0 32 ............................ ATGGTCAACGGCACATCGACGAATGGCCCGAT 398741 28 100.0 32 ............................ ATAAGCCGCCGCCCACAAGTACGAAGGTTGCG 398681 28 100.0 32 ............................ ATGAACTTGGCGATCATGTTGCTCATGCGTCG 398621 28 100.0 32 ............................ ACCGAAACACAACGCGCAGCCATCTATTCATT 398561 28 100.0 32 ............................ TGAGAGCATCACCGTTGCGATTGCTATCGCAC 398501 28 100.0 32 ............................ ATGAGGAGATCAACGCCAAATGGTTCAAGTTC 398441 28 100.0 32 ............................ GGTGAGATGAGCAGGAACACACCCGACACGGC 398381 28 100.0 32 ............................ TGGAAATCGCCGCCCTCCACATCCAGGGTGCG 398321 28 100.0 32 ............................ AGCACTGCCATCTCCAATGTCACGCTGCGCGC 398261 28 100.0 32 ............................ TTTTCGACCATGTTCACGGTATCGACTTCGAT 398201 28 100.0 32 ............................ AGCAAAACACCGCCGCAAACGTTACGGGAACG 398141 28 96.4 32 ...........................G AGGACAAGATACTGACGCTGGATGGCCCTCTG 398081 28 100.0 32 ............................ AGTCAGTTCCTGAAACGCGTCCGCCGTCATGC 398021 28 100.0 32 ............................ CTGCGCGCCAATGGTATCGCGGATTTACCGAT 397961 28 100.0 32 ............................ TTAACGACAAGACCGGCCGTCAACTGTCATCG 397901 28 96.4 32 .............T.............. TATCTCGTTCAACGGCCTGGCGAAGACGTTCC 397841 28 89.3 32 ..T........C.T.............. ACTGGGCACGGGACTACAGCAATAGACGGTTA 397781 28 96.4 32 ..T......................... AGCGTGACGCGCTCAACGCTGACGGCATCGCT 397721 28 100.0 30 ............................ TTCGTAGCGGTTTTGACGTTGACGTTCTGT 397663 28 96.4 0 ....................A....... | G,A,A [397636,397640,397642] ========== ====== ====== ====== ============================ ================================= ================== 33 28 99.2 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GATCCGGCCTATTACGGCCGCTTCGGTTTCAAACCGGCCGCCGCCTATGGCCTGAATTGTCGCTGGCCGGACACGGAAAGCGCGTTTCAGGTGTATTCGCTGGCGCAAGACGCTCTGAATGGCGTCAGCGGCGAAGTGGCGTTTTCGGCGCCGTTTAATAGCTTTTAACGACCGGCAATAGATACGCCAACGACAGCGGCGGGTGATTCACCAGCCGCTCTTTTTGTATTTTGCTCAGCTGTTTGAGTGAACAATTCAGTTCATCTGTCGTGTCTATGCGTCGCAGTGAGACGGATGGTGATACCAAACAGGAGCCTATAATTCCCCCCTAAAATGTAGAAATGTCACCTTACTCCATTCTTGGTTGCCGAACCCTTTTTTGAATGCTTTCCATAATTCATTGATTATAAATAATATTCATAGGCATTTTAAAAAAGGCTTTTTTAAAAGATATGCCGATTTTCTTCCAACAATCAGCTGATTAGCGCTAAGATTCAACG # Right flank : AAGTAATATGTATTTGGCACATTCCGGCAGTGATCAATAAGTGGATGATTTTATTTGTCCGATTGATGGATATTGACTCGCTTGCAACGGATTTCCCTGTAAAAACGTGGTAGAACGTTGGTGTCGCCTGCATCGATATGCATTACATGTTATTTATTTTAATTGTAATTATTTCATTATGGATAAGAAATATAACAATGAAAAATGTCCTCTCCTCCTCTGAATTAAAAACAATACTGCACTCGAAACGAGCAAACTTGTATTACCTGCAATATTGCCGAGTTTTAGTGAATGGCGGCCGCGTCGAATATGTCACGGATGAAGGAAAACAGTCCCTGTACTGGAATATCCCCATTGCCAACACCACCGCCATCATGTTGGGAACCGGAACCTCGGTCACGCAGGCTGCAATGCGTGAATTTGCTCGCGCCGGGGTTTTAGTCGGATTCTGTGGCGGCGGCGGGACACCCCTATTTGCTGCCAACGAAGTGGAAGTCGCC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //