Array 1 44088-45824 **** Predicted by CRISPRDetect 2.4 *** >NZ_QYMX01000011.1 Escherichia coli strain N039.E-6 NODE_11_length_156853_cov_28.4263, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 44088 29 100.0 32 ............................. GATACGCTTCATCGCCCGACGTGGGGAGCATA 44149 29 100.0 32 ............................. ATATTGTCAGAAACTGGCTGGAGCATGGTGAC 44210 29 100.0 32 ............................. GTGGCTGAACTTCCGATGCGATGAATGTTATT 44271 29 100.0 32 ............................. GCGAATGCCCCATCTGTAAACGCCGGGGAAAA 44332 29 100.0 32 ............................. GGATTTTCTTTGGTGGGGAATGCCCGCCGTGT 44393 29 100.0 32 ............................. TTGATTACCTCGCTGTTGCTGCGCTACTGGTG 44454 29 100.0 32 ............................. GCGTTTCCATGCCGTTGATAAACATCCCGCCC 44515 29 100.0 32 ............................. GGAATAATTACCGCGCTGATTAAATTAATTAA 44576 29 100.0 32 ............................. GCGGCAGCGCCCGCCGGGTACGACGGCAGCAC 44637 29 100.0 32 ............................. CGCTTTTGCTCAGTAGTGAGTGTGATTTCATC 44698 29 100.0 32 ............................. CAGGTACAGCCGTTTCGGTGTTTTGTTTTTGT 44759 29 100.0 32 ............................. GCGTCGCTGGAAGAACAAAACCGCCTGATCGA 44820 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 44881 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 44942 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 45003 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 45064 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 45125 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 45186 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 45247 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 45308 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 45369 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 45430 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 45491 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 45552 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 45613 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 45674 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 45735 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 45796 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 29 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 61326-62451 **** Predicted by CRISPRDetect 2.4 *** >NZ_QYMX01000011.1 Escherichia coli strain N039.E-6 NODE_11_length_156853_cov_28.4263, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 61326 29 100.0 32 ............................. CCCCTTGACCTTAACGCCGCGTTTAGCGTCAC 61387 29 100.0 32 ............................. GGTATTTTCAGCAGATTAACCACCGCGATCGC 61448 29 100.0 32 ............................. ATTACATCCGGCAATATCATGCTGATGCCTCG 61509 29 100.0 32 ............................. GGCGGGCCGTTGGCTAAACGCTGCGATCTGCC 61570 29 100.0 32 ............................. GGACGCCCAGGAAAAGGACATTGCAGCGTCAT 61631 29 100.0 32 ............................. AAGGTCGTAAACATTGAAGACGCGATCGCGCG 61692 29 100.0 32 ............................. TAACAGGAATGTTTACGCTGGCTGAGGCTGAG 61753 29 100.0 32 ............................. CCGCCGTCGAGTGTAATACCCTGATCCATCGC 61814 29 100.0 32 ............................. CAGGATTGAAATACAGCCTCGGCCTGGGACAG 61875 29 100.0 32 ............................. AGGCGAGGGAGATCAGAGATCAGGCTATTACA 61936 29 100.0 32 ............................. AGATCGGCGGCCAGTGGATAACCGTTATCCCC 61997 29 100.0 32 ............................. GTGTGGTAATTGGTGGTCTGGCTGGTGGTTTA 62058 29 100.0 32 ............................. AGAATCTGGACACTGCATATACCGCAATCCGT 62119 29 100.0 32 ............................. CCAGCCGTTCAGTATTGCCGGTGTCAGCAAAA 62180 29 100.0 32 ............................. GAAAAGCTACTTTTGTGTTCAACTGATGCATT 62241 29 100.0 31 ............................. CCGCGCAAATCCAGCGAGCCGCCGACGCTCA 62301 29 100.0 32 ............................. TTGCAAACCGTGGCAAACGCAATTAACAAAAA 62362 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 62423 29 93.1 0 ...........AT................ | ========== ====== ====== ====== ============================= ================================ ================== 19 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCTGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGTTAGGCGATAGCGGTCATCGAGGACGCGGCGGATGAGTATGATCGTAGTTGTAACGGAAAATGTTCCTCCACGTTTACGTGGACGGCTCGCTATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTCGGAGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTAGTGATGGCTTGGGCGACCAATACCGAGTCAGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //