Array 1 1-1523 **** Predicted by CRISPRDetect 2.4 *** >NZ_LLHB01000207.1 Acinetobacter baumannii strain ABBL101 contig-3000037, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1 28 100.0 32 ............................ AACAATTGCCTGACTGGTATGAAGAACCAGTA 61 28 100.0 32 ............................ AACAATTGCCTGACTGGTATGAAGAACCAGTA 121 28 100.0 32 ............................ AATGTACTTTAATTTCCACTCGACACCAGTTC 181 28 100.0 32 ............................ CATGACCGAAACAGCCAAAAAGGTTTTATGTA 241 28 100.0 32 ............................ TAAAGGATAGTTAGCTGTAGGCCCTGCGGTTT 301 28 100.0 32 ............................ TTATAGTTATGTGTGTGATATCGTTAAGCTGC 361 28 100.0 32 ............................ TAGCACAATCCAAACCTCAATAAAAAGTAAGA 421 28 100.0 32 ............................ GAGCCAATAAGATCGCGAAGTATGCGGAAATC 481 28 100.0 32 ............................ ACAGAGAAAACCCCACATGTTCGAGGGACTGC 541 28 100.0 32 ............................ ATAATTCCGCCATCCTCGGCTGAGATATGGGT 601 28 100.0 32 ............................ TGCCGGAGCGGTCTTGTCATTGGCGAACCCGC 661 28 100.0 32 ............................ TATGCGATTTGATAATTAAATTGCGATACTGG 721 28 100.0 32 ............................ GAAATAAAAAACACCTGATGAAAACAGTTCAC 781 28 100.0 32 ............................ ATAATCACGAATATCACCAGTAAACCAGTGAT 841 28 100.0 32 ............................ TTATTGGTCCTGGTCAGTGGAATGGTGATTCT 901 28 100.0 32 ............................ TGGGTAAAAGCCGATGGATTAATCATCTTTTG 961 28 100.0 32 ............................ ATTAACAAGAGTGGAATTTATTGAACTATTAA 1021 28 100.0 32 ............................ TCTGGGTTCTTTTCGCGTGTATGGGATACTTG 1081 28 100.0 32 ............................ TGTAAAGTCATTCGTAATAACCGTTATACGGC 1141 28 100.0 32 ............................ AAAACCAATCAAATAACGGTTATGTGGCCACA 1201 28 100.0 32 ............................ CATAGCGACATATAGTTTTGCCCGGATCTGAT 1261 28 96.4 32 ..................A......... TGTTTCGCGTTGAGGTCCGGGTAATCGCCTAT 1321 28 78.6 27 ....C.....CTCC..........T... GTCTTGTATCCTGATTTCAAAGATTCA 1376 28 92.9 32 ....C....T.................. ATATCACGCGCCATTGCAAGTTTTCTACCGAT 1436 28 89.3 33 ...A........CC.............. TGATCTTTAAGATTAAGCATCCGTTCTGTTTTT 1497 27 85.7 0 ...TG.......C...........-... | ========== ====== ====== ====== ============================ ================================= ================== 26 28 97.8 32 GTTGTTCATCGCATAGATGATTTAGAAA # Left flank : | # Right flank : GAGTTTCTTTCAAAATTTAAGACGACGTATTTTGTCGTTAAAAGGTTGTATTAAGCTGATAAAAACTTTCTCTTTTTAAAACAAAAGATTATATT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTTCATCGCATAGATGATTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: F [matched GTTGTTCATCGCATAGATGATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 3-4053 **** Predicted by CRISPRDetect 2.4 *** >NZ_LLHB01000090.1 Acinetobacter baumannii strain ABBL101 contig-15, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3 29 86.2 31 ....G.......CC..............A GATGGTAAGAAAATTATTGAGTCTGGAGACA 63 29 86.2 31 ....G.......CC..............C GACAGTCCAGTTGATCAGATCTTGATTAGAC 123 29 86.2 31 ....G.......CC..............A ATGACATGGTTCAACAATTAAATTCATCTCA 183 29 86.2 31 ....G.......CC..............G TTCTTTTCTGCAATATGTGCCATTAGGTATT 243 29 86.2 31 ....G.......CC..............A TTTTAGATGAAACAAAAGATAGCAGGATTAT 303 29 86.2 31 ....G.......CC..............A GACCAAGCGGATTGACCGTATTGATAAATAA 363 29 89.7 31 ....G.......CC............... TCTGCAATACAAATCACTGGATCAGCCAGGT 423 29 89.7 31 ....G.......CC............... GAGTCTTTGATTTCCCAAATATTACTTGAAA 483 29 86.2 33 ....G.......CC..............C CTGAAAAATTTCACTGTGTCCATTTCGTTATTA 545 29 89.7 31 ....G.......CC............... ATGTCTTTAAATTCTGAAAAAACACTTGTTC 605 29 86.2 31 ....G.......CC..............G AAAAAATTGAAAACTTTTTAGAAGTAAATGA 665 29 86.2 31 ....G.......CC..............G CCACACATGCCTAAAAACGCAAGTGCGCTCG 725 29 86.2 31 ....G.......CC..............A TTATCAGATAAGCCTTTTATGAATGATCGTT 785 29 86.2 31 ....G.......CC..............A TTAGCTATTAGCTTTTTGGCAACAACAACAG 845 29 86.2 31 ....G.......CC..............A GTTCATGAAAACAGCTTTAAAAAGAAAGCAC 905 29 89.7 31 ....G.......CC............... CCGAAGGTAGTGAAGCTGTGTGTGAATTTAC 965 29 89.7 31 ....G.......CC............... TGCAAGCTCGTCTAGCTAAAGTAGACCCTAA 1025 29 89.7 31 ....G.......CC............... GGTACGACAACTACGAAAAGCTGAGCAAAGT 1085 29 89.7 31 ....G.......CC............... CAACTTAAATGGATGCTCCCCGCGGTGAATT 1145 29 89.7 31 ....G.......CC............... TGATTGCTAGACGGATTTTTAGGCAGATCAT 1205 29 86.2 31 ....G.......CC..............G AGTTTAATGCGCTATATGGCGACGAGGATTT 1265 29 86.2 31 ....G.......CC..............C ATGCAATCGCGTTGATTACCGCAGCTTCGAA 1325 29 86.2 31 ....G.......CC..............A TGAGCCGCAACCATACGGTCTATGACTTCCA 1385 29 86.2 31 ....G.......CC..............A TAGCGCCCTGCTCTATGTTGTCACTTCCGAA 1445 29 89.7 31 ....G.......CC............... CCAAGTGAATCGGCTCCTAATGCAAATGACC 1505 29 89.7 31 ....G.......CC............... GAAAACCAATATGCTGCCTAATTGCCATAAG 1565 29 86.2 31 ....A.......CC..............G ATCTGCGTCCATTTGTACTTGCTGCGGGTGC 1625 29 96.6 31 ............................A TATACAGCACCGCTTAGTGCGACGCGGTCAT 1685 29 96.6 31 ............................G CCCACAGGTTGAGCATCAACGGCCATCGAGA 1745 29 96.6 31 ............................A TCATAGAGCTCACTTTGTCGTTGAGCCTGCA 1805 29 96.6 31 ............................A GAAGGCCCGTAATTTAACTGTAAGCCGTGGT 1865 29 100.0 31 ............................. CTTCCTGAGTTTTAATCCCATTTGCCTTACA 1925 29 93.1 31 ......T.....................C ATCTTCGCCAATTGCTTTTGGAGAGTTGCTA 1985 29 100.0 31 ............................. TCAGGGAATTATCGTGAAACTTTCATTGACT 2045 29 100.0 31 ............................. GCACCAGCTGCTGGCTGGTTGAAATCTGCAA 2105 29 96.6 31 ............................A GAAGGTGCAGAGTTTTGGGACTTTGGGTGGT 2165 29 100.0 31 ............................. GTTTCAAAAGCTACACCATCAAAACCATTGC 2225 29 100.0 31 ............................. ATTTAAGTAATAAGTTTAATAACGACCTAGT 2285 29 96.6 31 ............................A ACACGTTCTCTATATCGCTGTTTGCGGTCAT 2345 29 100.0 31 ............................. TCAGTTGGATATGCCTTTGATACCAAGAAAC 2405 29 96.6 31 ............................G CCTGCAGACACGGATTTACGCAGCTGATCGA 2465 29 96.6 31 .........................C... AACCAAACTATGTCATCGATCGGAGATTTCA 2525 29 100.0 31 ............................. TAAAATAAATGCCTGTGGTTTTTTCTTAACT 2585 29 96.6 31 ............................A GTTTCCGAAGTTGAATTACACTCGCCAAGTT 2645 29 100.0 31 ............................. AACACAGTGATTTGATTACCTTGAGCAACCC 2705 29 96.6 31 ............................A TCTTGATGCCGAGGTCTTTAGCTTCTTGAGA 2765 29 100.0 31 ............................. CATCCACCTTTGATGAAACGGATCCACGCAA 2825 29 100.0 31 ............................. CTTGTGTGACGGCCTCCACTCCAGATCCCGC 2885 29 100.0 31 ............................. TAAGCTTCAAAAATAGCCATTGATTATAAAA 2945 29 100.0 31 ............................. GACAACTTTCCACGGCAATCAGGGCTTTCCA 3005 29 100.0 31 ............................. AAAGATGCACGTGGCCTAATGCAAGTTATTC 3065 29 100.0 31 ............................. TTAAAATTAGGTGCTGAGTTACCACGGCTCA 3125 29 100.0 31 ............................. AAACCAAGAACTTGAAGATTTTGATGCTTAT 3185 29 100.0 31 ............................. AAAAATAGTGTGTTAATTATTTATGATGAAA 3245 29 96.6 31 ............................C GTATACATGCACATCAATACGATATCCCGAT 3305 29 96.6 31 ............................A TACTATTATAATGATCTAAACCCATTACAAC 3365 29 100.0 31 ............................. GCAGCTACTCGACATGTTGGTAGGGCAGATG 3425 29 96.6 31 ............................C AGTCGGCTGGTGCTAATTGAATAAAATCGTT 3485 29 96.6 31 ............................A GATTGAGGCGATTTTTATCGCGGACATTGCC 3545 29 96.6 31 ............................C AGTCCCCGCTTTGAAGCATTCCCATCAGTAC 3605 29 100.0 31 ............................. CACAGCTATCGTCTGGCTGCCGTCGCGTAGA 3665 29 96.6 31 A............................ TATTATTAAACGGGAAAAGTATATTCTTGCT 3725 29 96.6 31 ............................A TACTATTATAATGATCTAAACCCATTACAAC 3785 29 96.6 31 ............................A TCATCAATAAGTTGGCCTTGATTTAAATAGT 3845 29 96.6 31 ............................A GATACAAACGAGTTCGCATCTCGACCAGAAG 3905 29 96.6 31 ............................A TTATCCAGATAAAACCATATCTACAAAGTGG 3965 29 100.0 31 ............................. CAACCTGAACACAGACATACATGTTCTATTG 4025 29 86.2 0 ...GC...................AT... | ========== ====== ====== ====== ============================= ================================= ================== 68 29 93.7 31 GTTCTTCATCGCATAGATGATTTAGAAAT # Left flank : AAG # Right flank : TTTGAATCTTAAAAAGAGAAAACCCCGAAACTTTCGTTTCAGGGCTTTTCACGAATCTTGGTGGAGATGGCGGGAGTTGAACCCGCGTCCGCCAGCACTACGCTCGAGAATACTACATGCTTAGATATCGTCTATTGTTTTAACACCAAGTGACCCGACGAACAGGGTACAAGGTGCGATCCTCTAAGTTTGGTATAAAGCCCCGAGGCTTGACTCTATACGGACTTGTGTGCGTGCGCTTCAGTCGGGTTCCCAGACCACAAGTATTCTAGGAAGCGGACAAGCGGCCCTTAGGCAGCTAGAGCGTAAGTTTCGTCGTTTGCGACTATTTAAATGCAAATTTTATTTACGAGAGAAAATGCGCTCTCGGCATGCATCTATGAGTTTCATCACCGGCGTCGAAGCCAATAACATCCCCATGAATGTCTGCACATCATAGCATAACTAAAATAAAATGCTGTGCATTTTATCAACAGTCTGCCACTGATGAACATACTTAC # Questionable array : NO Score: 5.30 # Score Detail : 1:0, 2:3, 3:0, 4:0.69, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.35, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTCATCGCATAGATGATTTAGAAAT # Alternate repeat : GTTCGTCATCGCCCAGATGATTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: F [matched GTTCTTCATCGCATAGATGATTTAGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [3.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //