Array 1 478794-481841 **** Predicted by CRISPRDetect 2.4 *** >NZ_MDJE01000010.1 Clostridium perfringens strain 13/0847-D NODE_1_length_1106069_cov_12.2216_ID_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 478794 30 100.0 35 .............................. ATAAATTATGGGAGAAGTAATGGAAAAGAAATTAG 478859 30 100.0 36 .............................. CAAAATACTTCAACATTTTCTATATTAATTGTTTTT 478925 30 100.0 35 .............................. ACAATTAGATAAAATTGGATTAACAAAGTTAAAAT 478990 30 100.0 35 .............................. AAATCATAAGAATCAGTAGGAACTCCAAAATCAAC 479055 30 100.0 34 .............................. TAAGTACAATATTTCTTAACTAATTGCATAGCAA 479119 30 100.0 33 .............................. GTCAGAAATTTTATAGAAAAAGTATGTTTGCCG 479182 30 100.0 36 .............................. CAATCATTTAAATCAATAATTTTTGGAGTAAACAAA 479248 30 100.0 35 .............................. AAGTCAAGGTATGGTTATTTCTCCAAAACAAGTTG 479313 30 100.0 36 .............................. TAAGTACCAAAAACAACCCTAAAAGAACCATAAAGA 479379 30 100.0 37 .............................. TAATTAGCCATTACCAAAGCCCCCCTTTTCTGTGGTC 479446 30 100.0 36 .............................. AAGGGATAATGGAGATTGGTATTACTTTAAGAGTAA 479512 30 100.0 36 .............................. TAGCCTTAATCTAATTTATTATTCAGGAGGATATGC 479578 30 100.0 36 .............................. ATTATTTTATTTCTACTTCTTCTAATAGAATCTTCT 479644 30 100.0 37 .............................. TTTACAGTGCTAGCACTGTTGCAGTGACAATACTTAG 479711 30 100.0 35 .............................. CATTTTTCGTATGTTCCAAGGGCTGCCCTAGAACC 479776 30 100.0 35 .............................. ATTCCAAACGGAACCACCTTTACTCCTAGCTCATT 479841 30 100.0 36 .............................. TAATTAAATACCTCCTATAAAATAGCGTCTTTTAAA 479907 30 100.0 36 .............................. TTTTTTAAAGAAAGGCGGTGGGAATATGAAACTAAC 479973 30 100.0 37 .............................. TTCCTAGATGGACAGGAAGTTTCCATGTTACTTGACG 480040 30 100.0 34 .............................. GCGAAGATAAAATAGCAGGATAGAAAATATAAAG 480104 30 100.0 35 .............................. CCTATATTAACTTTAACCCCTCTTCCATTTACTTC 480169 30 100.0 37 .............................. ATAATGGATATGGCACTTATTGCAAAGATTGTGCTAA 480236 30 100.0 36 .............................. TACTATAGAAAATTCTGTTGAAGGATTAACTACTGA 480302 30 100.0 35 .............................. AAATCTTGTCTTAATTTTTTATTTTCTTCTTCTAA 480367 30 100.0 36 .............................. AAAGTACATCTTACATACTTAATCATTTTCCCTTTA 480433 30 100.0 37 .............................. TTATATTTAGTTAGTTTCTTTCTAAAATATTTATGCC 480500 30 100.0 35 .............................. TTGGAAAATGCTTTTAAAAACTTATGATAAACCTG 480565 30 100.0 35 .............................. AGTTGTTGTTTAACATTATTAATCTCTTGCTTATC 480630 30 100.0 36 .............................. TATAGCTATTCGTCTTAAAGATTCTTATGACACTAA 480696 30 100.0 36 .............................. TCAAGAGCTTTTTGTTTCTCTGGAGTAATAGTAATT 480762 30 100.0 36 .............................. TTTATAATAGAAACTTGTACTTTTTCTGTCCTTAGG 480828 30 100.0 36 .............................. TGGCTGATCTCTGGTGAAGGAGAGATGTATGAAATA 480894 30 100.0 36 .............................. TCTGAAGTATTAACGAATCTCTTACAAGCTCTATTA 480960 30 100.0 36 .............................. ATTCTATTTTGCTTAACAAAGTAACAAGTATTAATC 481026 30 100.0 36 .............................. GTTTGATTTTCCTTATAAGTAAGAGTTAAAAAATAT 481092 30 100.0 34 .............................. CAATTAACACCTCTTTTTTTAGCTTTGCAAGAAG 481156 30 100.0 36 .............................. TATGTCTGTCGCCCAACTTGATTATGGCGACAATTT 481222 30 96.7 35 .............................T ATGGAAATGGTCTTGATTATATATCTGATTTTAAA 481287 30 96.7 35 .............................T CCAATTCCACCTATAGGTTTATCTATAGGCTTACT 481352 30 96.7 36 .............................T GCATTTGTTTGTGTCAACTTTTGGTATGTAATTAAA 481418 30 96.7 36 .............................T ATAGCTTGTATACCCATTTGTGCTAAAGCTTTACGA 481484 30 96.7 35 .............................T ATCGAAGAAAAAGTTGAGCAGCCGTCTAATAAAAT 481549 30 96.7 34 .............................T CCACACTTTCTCTTTCTAAGCCTATGTACTTCCA 481613 30 96.7 36 .............................T TTGGTATATCCAAAGTCTAGTCCAAATATAGCTTTA 481679 30 96.7 35 .............................T GCTAAAGTGGGCAGCTAATAACCTTGGAGTAGCCC 481744 30 93.3 36 ......T......................T CTACTTATAACCACAAGAACTTTCTAAGGTTATCTA 481810 30 90.0 0 .......C........A............T | TT [481833] ========== ====== ====== ====== ============================== ===================================== ================== 47 30 99.1 36 ATTGAACTTTAACATGGTATGTATTTAAAG # Left flank : TAAACTTTTTCATAACAATATACCTCCTTTAAAATAAAAAAGCCAGAGAAATATTATAAAAATATCTCCCAGGCTTTTATCCTTCCGTGTTCACAGTCTTTCTGTGCGTTTTCTCTTGGACCAGACTAGCTAAAAAGCTACGGAACCCTAGAAAACTTTATATTATTAAACTTTAATTAACAAATTCAAAATTATAAGTTAATTTTAGCATAGTATAAATGCTAAATCAATTCACTGATAAAAATTTGAAGCTTACTGAATAGGTAAATCTTAGTATTTAATTAATGCATTCTTAGAAATATTTATAAATACACAAATAAAATTTTACCAGCCTAAAATCATATAAAATCACCTTTCAGACCTTGAAATAACTAGATTACAAGTTGATTTTATATTGGTGCTTTAAATTAAAGTGAAACACTGGTAAAATAATAAGAGAGGTGTTGAAATAACTAACTTAAAGATAAATATCAAGAAAAAGAAATGGCTATTTTACAAGC # Right flank : TAAGAACTTTAAATATTAAATTGTTGAAATAGGCATATTGCTATTACTTTTTCTAAGCTGATTAAAATACTTTTATTATTAACTAACATTTTATTAAACAATTAATGTTACAAAAATATATAAATTTATAAAATAATTATTTGTTTTACAAAATTTGTTGGGTAAAAATTGAAATTATAACTATAATATGTAATATTTTTGTAAGATGAAAAGAAAAAATGCTTTAAAATATTAAAATGATTAAAAGATAAATTTTGTAAAAATAGTTTTTATTGGTATAATTAAAACATCAAATGTATTTAATTTATATAATAAAGTTTTTAATAACTCGTGGAGTATTTAAAGAATGTATTTAATGCATAAAATATTTTAACCATAACATTAGATGTACTAAACAAAAGATAAACTAAATTATTTGAGTTTTCAATTAATTATTTAAAATCAATTTTAATAAAAATAAAGTAGAGTTTTTATAAGGAGGTGAGTATGGTGAAAGTTTT # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGAACTTTAACATGGTATGTATTTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 2 492168-493048 **** Predicted by CRISPRDetect 2.4 *** >NZ_MDJE01000010.1 Clostridium perfringens strain 13/0847-D NODE_1_length_1106069_cov_12.2216_ID_1, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 492168 30 100.0 35 .............................. AAACTTATAGTCCAATTTCTATTATTTTTACCTTT 492233 30 100.0 37 .............................. CTAGTTATTTCTCTAAACAAACAACCACAAGATTTTA 492300 30 100.0 35 .............................. ATGGGGTTCTTGGAAAGGTTCCCGTTGATGTCTAA 492365 30 100.0 34 .............................. AAAGATATTCCAAAAGATGAATCAAAGGATACTC 492429 30 100.0 34 .............................. TATCACTTACATTCTTATAACCTTTGTTTTTTGC 492493 30 100.0 35 .............................. TCCCATGCAAAAACACAAGGTTTATCGTACTCTTC 492558 30 100.0 35 .............................. AAATTTTCAGTTTGCTTTTTTAAACAGTCATACAT 492623 30 100.0 37 .............................. ATGAGATTGTAAAGGAGTTTTTATGGCATCACATGTT 492690 30 100.0 36 .............................. CCAATACAGATACTTGTAATGTTACCAATGTCTAAT 492756 30 100.0 36 .............................. TGTCTTATAGTATACCCATTATCTAAAAGCCATTTT 492822 30 100.0 35 .............................. ACAAGTACCAGGTATTAGTGGAGCAAGTGTAGATA 492887 30 100.0 36 .............................. TGTAACAGCTTAAAGAAGGGAGATTAAAATGTTTAG 492953 30 100.0 36 .............................. GGATTAAAGAAAGAACCTCCACCATTCCATGTGTCC 493019 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 14 30 100.0 36 ATTGAACCTTAACATGATATGTATTTAAAT # Left flank : GTAAGATATGAAAAGTAAAATGAATTATAATTATGCTTTTGTATTTTATGATGTAAATGAAAAGAGGGTAAATAGGGTGTTTAAAGTTTGTAAGAAGTATTTATCTCATTTTCAAAAATCAGTTTTTAGGGGAGAAATAACCCCTGCTAATCTTATAAACTTAAGAAAGGATTTAAATAAAGTAATAGAAAAAGATGAAGACTTCATATGTATTGTTAAATTATTAAACGGAAATGTATTTGGAGAAGAAGTGCTAGGAATTCAAGAAGTAATTAACGGAGAAACACTGATACTTTAATAATTAATTCAAAATAACATATAATTTTACCAGTGATTTAAGTGGAAAAAAGTTTGCGAAACTCTTGAAATAACTAAGTTTTAGGCTGATTTTCGATACCCTCTTTAATTCTTAATAAAACACTGGTAAAATTATAGTATAAGTATTGAAATAACTAGATTAAGATATATTTATTAAATTTAAAAATGGCTATTTTACAAGT # Right flank : TATTAATACTGAATTCACTAAAAATTAAGTACCTAATTTATATTGTTTTTCAGTATAATATAATTACTTAATGTCTTTCTATATAAAGTTTTATAATTAAGTAGGGGTATAATATGAAAAAACTATCTTTTATTATAAAAAATATTTTGAAATTCTGGTGGTGGCAAGATATAGAAAAATCTAATATTTTTATAAGGGTTATGAATCTTGGAATGGCTTTATTTTTAAGTTTTTGTCTCTTAATATGGATGTGTGGAGAAAATTGGAATATTATATTAAGATTATTTATAAGTATTTATGGAGTTCTATGTTTCATGTCTTTTTGGCCAGTTTCATATTTATTTGATGAAGAGGATAAAGTAAAAGGAAGTACATTTTACATATTTCAAAATATTTCAGTATTTTTCTCTATTATTATATTAGTTGTTTATATACTGAAGAATTATGATAGAGTTAAAAGCTAGTAATATAATCAAAAGTAAACCAATATAATTTAAAAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGAACCTTAACATGATATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [83.3-83.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA //