Array 1 137693-138453 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDKJ01000005.1 Brenneria roseae subsp. americana strain LMG 27715 scaffold5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 137693 29 100.0 32 ............................. TATATTTTGATAAATTTGAATGGGAACAAAGT 137754 29 100.0 32 ............................. CCGAGGTTTCCGTTCCACTAATTCCTCATGGT 137815 29 100.0 32 ............................. AGATTAGTATTCACTGAATAAAAATATTTCAT 137876 29 100.0 32 ............................. GCGTCTAAACAGATCCTGGACGATTTCGCACA 137937 29 100.0 32 ............................. CTATCAAACCACTGGAAGGCGTATATCGGTGA 137998 29 100.0 32 ............................. ATATTTATCATTGATTTTCTGCATTTCAATGT 138059 29 100.0 32 ............................. CGGACCAAAAGTCGCGTTAATGCCCCAGAACA 138120 29 100.0 32 ............................. AGATCATGAACTACCGGGATGATACGTGGGAA 138181 29 100.0 32 ............................. TTTCCATTCAGGGGAAATAACGGTTTTATTAC 138242 29 96.6 32 .................A........... GCCGATATCGGTGATGTTCGATGCAGTCATAT 138303 29 100.0 32 ............................. AGCATTGGCTGACAGCACAGCAGCTCGGGGTA 138364 29 96.6 32 ..............A.............. TTGCCGATGACCTGGCCGGCTTTGGCGCGTTT 138425 29 72.4 0 ..A.......T.T.AA..........AAT | ========== ====== ====== ====== ============================= ================================ ================== 13 29 97.4 32 GTGTTCCCCGCGCCCGCGGGGATAAACCG # Left flank : TATAGAAGACGTGCTTGCTGCCGGAGGTATCAACCCGCCGCTGCCGCCTGAAGATGCACAACCGCCAGCTATTCCTGAGCCCAAAACGCTTGGTGATATTGGACATCGGGGGCATCGCTGAAATGAGTATGTTAGTGGTTGTGGCAGAGAATGCACCGCCTCGCCTACGTGGGCGTTTGGCTATTTGGCTGTTGGAGGTGAGAGCGGGCGTCTATGTCGGCGATACGTCGCAGCGCATCAGGGAAATGATTTGGCAGCAAATTGTTGAGTTGGCTGAACAGGGAAACGTGGTGATGGCATGGGCAACGAACACCGAGTCCGGTTTTGAATTTCAAACCTGGGGAGAAAATCGGCGTATGCCGGTAGACCTAGACGGACTGCGGTTGGTCTCATTCTATCCATCTGAAAATCAATAAGTTACAGCTCTTTAAAAATAGGGGAAATTTGGTGAATTTTACTCTTTAAAATAAACCTTTATAAAACAATACACTACACTTAGT # Right flank : TCGATTCCCGACTGGCAGTACCGGATTGATGCGAGCGGGTTCCCTGTATCCGTTGCCGAATCCGGCGTTGTGGCATGCTTTTATTGCGCTTGCGCTGGTCGTGAATTTTAGCCGTTTGGTTATGAATCTGAATCATGGCCGCATTCAACAATATGCCTGGGAAAGCGGTTGGCAAAACGCCAGCGAGGTATTTTGCCGAGTCTGGCGGCGTCTGGAATGAACGCGTAGTAGAGGGGCTATGCTTCGATTATGGTGTGGTACTCAACCCCGGCATCAGGGCACAGGGTCTGAAGCAGGTCGAGCAGGTGATCAAGCCCGGCTTCCATAACGACATGCTCGATGCCGGGAACGCCGTCAATGAAGAAAAGTACGTCACGGGTAGTGTCGGTAATGCGCGACTTGTCGTCCTGGCCGTAGATAATGCTCAGGATGATGCCATCCCGGTCTTTGAGGCAGATGTCATTGCGCTTCGGCTGAACATCACGGTCGCCGGCCGCCAA # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCCGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCCGCGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 272970-272522 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDKJ01000001.1 Brenneria roseae subsp. americana strain LMG 27715 scaffold1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 272969 28 100.0 32 ............................ GCCCCTTTGCTGCCGAACAGTAAAGCGTAAGC 272909 28 100.0 32 ............................ TATGCAAAAAGGTGGTCTAAAGGTGGTCTAAA 272849 28 100.0 32 ............................ TCGCACGCGTGTGGGGTACTGTATATGCCCGA 272789 28 100.0 32 ............................ ACGAAATTCTGAATCACGAGCGATCAGCTATG 272729 28 100.0 32 ............................ ATTGCGCATTGGCCGGCGTCATGCCAGACATA 272669 28 100.0 32 ............................ GACATCAACCCACATCGCATCAGGATTTGATA 272609 28 96.4 32 ............A............... TACGTTGACCAGATAACCGCTCAAGACGGGTT 272549 28 75.0 0 ....G.......AC......AAC.T... | ========== ====== ====== ====== ============================ ================================ ================== 8 28 96.4 32 GTTCACTGCCGTGTAGGCAGCTTAGAAA # Left flank : GTACAACGACTGGTTTCCCTCTTCCGTGACATATTCTACCCGACCGCCATTCACCAGAATTCGGCAGTGCTGGAGGTAATAAATATTGGCGCGTTTGGAATGCAGAATCGTTTTTAAATCTGAAGGACTAAAGACATTATCCATAATATATTCTCTGCCGCAGCGATAACTATAATGACACCGACGAAATAAATCGCAGGATAATTATTTAATAGAGAAATTTGTCATACTCTGGAAACTACACCCAATAAATTTCGAATTGCTGGGAGCCAATGTCCCTGCGATGGGAAAGATAAGGGATAAAGAACTCAGATTAGCACAGTGGTGCGCTGGAAAGTTACTGCCACAAATAATATTCCATCAGTGATGACCCTTTTTTATTTGCCTGACTTATGCGTATGAATAATCAATAAGTTATAAGGAACCAGAAAAAAAGGGGGTGGTATATAAAAATGATAATTGCTGCTGATAAAACAAATCGTTAAAGTAAAAAGGCTACT # Right flank : GCCACTTTCTTCAATGAAAGCGGCTCAGCATGGCTGGTCTAGGACGAACGTCTGTTCTTCGAACTATTCGTCGTTTTACCCGCAATGGTGACAAGCGCCAACGCGTTGTCCGCTGGCAGAATCCGTGTTCCCGGTGGTTCGCCCGCCTAACGGAGAAATCATCATTTTTATATAACTGGGTAAATACAAGAATCATGGAGGTTAATCAATTTTGATGAGAAACCGATGGAAAGAATAAATTAAGATGGGCCCAGAACAATACGCATTAACTATAAATATAAAAAAACATTCTTCACTTTGTGAAAGTGCTAAAAATACAATGGCGCTTCAACTCAAATGAGTAACAGGTGAATATTCGTTTATTCATTACCGTTATTCCCCCTGGATAGTGATAATAAGTGTCCTGCTATCGCCATGATTACGATGCTCACATAAATAAATTCCCTGCCAGGTTCCCAGATTTAATCGTCCGTTGCTGATCGGAATAGTTAAATTATTTC # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 281593-281921 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDKJ01000001.1 Brenneria roseae subsp. americana strain LMG 27715 scaffold1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 281593 28 100.0 33 ............................ GTAGGGACTACTAACTATATAGCCAAAAAATGA 281654 28 100.0 32 ............................ GCTAAAAAACCGCCGCCAGGTTCACCCCAGTC 281714 28 100.0 32 ............................ ATTGAAGAAGAAGGCCAAGAATGCAACCTGAT 281774 28 100.0 32 ............................ TTGCATCCCCAGGGGGGGCAGAACAACCAGTA 281834 28 92.9 32 ..........A..C.............. TAAAATGCCTTTTAAAACCATTTAAAGGTAAC 281894 28 82.1 0 ......C....C.C......T..G.... | ========== ====== ====== ====== ============================ ================================= ================== 6 28 95.8 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : CAGCGTTATCGACACTGGAGCAAACCGGTTGGTTGAAAGGGTTACGGGATTACACCCGGATTTCCGAACTCCAGGCCGTACCCGATGGCGTGAAATTTCGCACCGTGCGTCGCGTTCAGGTTAAAAGCAGCGCCGAAAGGCTACGCCGCCGTTCGGTTAATAAAGGGTGGCTAACCGCTGCTGAAGCCGCTGTGCGGATTCCTGATGCAGTAGAGAAACGTAGCAAACTGCCCTTTGTGCAACTAAAAAGCCTTTCCAGCGGACAAATGTTTCGACTGTTCGTTGAGCATGGGCCACTACAGGATATCCCCGTCGCGGGTCATTTCTCCTTCTATGGTCTAAGCACAGAAACCACCATCCCCTGGTTCTGACCCTTTTTTAACGGCCGACTGCAACTAATTGATTTTAAATGTAGTTGGCCTTCATAACAAAAAAAGGAGGTTTTGCAAAAAAATGCGTATTTTCTTTAAAAATCTGGTGATTAGTGTAAAAACCTAACG # Right flank : ACACACATTGGATTGGCAGAAAGAATGACGGCCATGCACGGCAGTGCATGGCCGTTGTGCTCTGTTAAAAAAGAACCACCGGATTAACCAAGCCCATAATCTGTTATGAATTACAGGCAGGTTCAGTCCGGTGGTATTCGGATATCAATCCGTTGTTCACTGAATGGCTGCGAAAGCCGCTGCAACGCGCTGAACGTTGCCGTGGTTCAGGCCCGCCAGACACATACGGCCGCTGGCAATCAGGTAAACGCCAAACTCTTCGCGCAGACGATCAACCTGCTCCGGGCTGAAACCGGTGTAGCTGAACATACCGCGCTGGGTCAGCAGGTAATCAAAGTTACGGTTTGGCAAAGCCGCTTTCAGCGCGGTGACCAGCGTCTGACGCATTTCAATGATGCGCGAACGCATCTCTTCCACTTCCGCGCGCCAGTTGGCATTCAGCTCTGCATCGTTCAGCACTTTGGAAACGACCTGCGCACCGAAATTCGGCGGAGAGGAAT # Questionable array : NO Score: 6.05 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //