Array 1 25863-26547 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJPI010000012.1 Leptolyngbya sp. FACHB-321 contig12, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 25863 36 100.0 41 .................................... GCAACTCCCTGGATTGTAGTTTTGCACCCCACCTATCATCG 25940 36 100.0 37 .................................... CGCTTTTTTGACTTCTTCAGTGACACTTTTTTCCAGG 26013 36 100.0 35 .................................... TTCGTATCAGTTGAACTAGACAATAGACGGATGAG 26084 36 100.0 39 .................................... GCGGGCAAATGAAGGTTATACAGGCGATCGCACCTGTCG 26159 36 100.0 35 .................................... GTGATAGAGGACTTCAAAAGTCAAGCCTTCAATGG 26230 36 100.0 36 .................................... ATGAACGCTAAGTGCATTGTTGTGCCTCAATTTGAA 26302 36 100.0 36 .................................... AGGCGAATTATACTTCTTGCTCTCTAAGAACTAAGA 26374 36 100.0 37 .................................... ACAGCCAACGTTGCAGCAGTCAGCGCCACCCCAAAGG 26447 36 94.4 30 ..............................GA.... AGACAAAGTATCCTGACGCAGAGCGCCGCT 26513 35 80.6 0 AA.A.G..........C...-...A........... | ========== ====== ====== ====== ==================================== ========================================= ================== 10 36 97.5 36 TCGCAATCACCTGTCCTTTCTGAGGCAGGTTGAAAG # Left flank : AAACTTGCACCTTGAAAACTGAATGATTCCAACAGCGCCGCGACGTAGGCTGCTTGCAGTCTACGTTCGTGCAAATGAGGGTTAGTTTGGCTGTCGTTAGACAGTCTTGCTTTCTGACCCTGGTAGCTGCTCACCCTGATGCCGTCGGATGAGAGACTTCGGTTTCTTAAACGAGATTAAGTCATAGTTGAGGCGTTAGTCTGCTTCAATTATGGCGTCGGTGCGCTCCCGGCAACAAGGGCGCGGATGTACTGCTGTAGTAGCTACCAAACCACCCCCAACCAAGGGGGAACCCGCTTCTATTCTTCCTTTCAGCGATCTGCAAAGACATAATTCTTTGCTGTGATCCGCGCAAAGGCTCAAATCCCTTTGCTGAGTCGGTTTCATGATTCTGGACTAGCTCTAAATTGTGAAAGCTCAGGTTTGGAGAAGGGTAGGTAATGCGAGCCGCGCAAGACCTTCTGAAACTTCTGCCTAGAGTGGGTTTTGGTTGGCTGCCG # Right flank : GGACCAAAAATTGAAACTGGTATTGATGAAGTGGGTTGAAAGGTAAAACTTTAGCCTTCATAAGTTATGGAGGTGCTTTTATATACGGTTAGACGACATCAATTTGTCACTACCACTTAAAAGACACTAATTTGTCTCGACGACAAGAGTTAGTCACTAACGACACTAGTCTGTCACCGATGACATTTAATTAGTCACTGTACAAGTTTCAAAGCGGGCGGCGGGAATCGAACCCGCATTATTAGCTTGGAAGGCTAAAGTTTTACCACTAAACTACGCCCGCAAAAGCAATATGCTCGAAGCATTTACAACGGTAACATATTTTCAAGGGAAACACCCAATTGAAGTAGTCATTTGAAGAGCCATTTAAGCGATCGCTCAATTTAAGCTGATGGTTGTGTCTAAGGTAGAGCTAGCTCTGCGTCCACAATCAAGTTTGACTGTGGAGGTATCAACGGCTTGCCGTTTAAGTTGTCTTGAGCTGGCTTAAACTGCCATTG # Questionable array : NO Score: 3.14 # Score Detail : 1:0, 2:0, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCGCAATCACCTGTCCTTTCTGAGGCAGGTTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [8,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.20,-9.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.64 Confidence: LOW] # Array family : NA // Array 1 12084-12415 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJPI010000042.1 Leptolyngbya sp. FACHB-321 contig42, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 12084 37 100.0 37 ..................................... GGATGTGTGGCACGACAAATTCGATGAGTTCCCAGTA 12158 37 100.0 36 ..................................... TCAAGTTTCATCCTGATGCAATGATCGCCGTCGATG 12231 37 100.0 40 ..................................... CAACGAGCGATCGCCCTCTTCTTACACTCCAGGCACGGAA 12308 37 100.0 35 ..................................... ACATCTCCGTTTGCTATGCCTGTGGCGGCATTCTG 12380 36 94.6 0 ...-..............................C.. | ========== ====== ====== ====== ===================================== ======================================== ================== 5 37 98.9 37 GTTGCGACAGCCCTCTCAGTCATGGGCGGGTTGAAAG # Left flank : GTTAAAACAGCGCCGCAGTTTATGCTCTTCGGAGCCTATGTACTGTGTAGCGGGGGTCAGGTTTACTGCTATTAAGGCAGATGCTTTCCGGCCCTGGTAGCTGTCCGTCGTTTGGGCCGCCATCTCGCAGTCAAGCTGCATGTAGATGGGAAGCTGTCTCTGAGAAGTTCCTTTTCAAGGTATAGCATAGTTGCGCTACCGGCTACGATCGACAACGCTCTACCCTCTGGCAACAGGGTGGTACAGATATGCACTTGTGGCAGCTACCGAATCGCTCTCCAAGCAAGGAGAGAACTCTCTCAACATTTTTTGGCAAACCGAAGCGAGGGCAAAAACCCTGGGGGTTTTGCCAAATCCATGAATCCATTTGCTGGTTGGGATTGCACAAGTTTGTGCCCAATCAAGGAGGACTTCAAGGAGTAATTTGATAGACCTTGTAAGAGAGGTTTGCCAAAACGCAACCTGAAAAGCCTTCAGTAAAAGGATTCTAAGCACTGGGA # Right flank : GGAGGTATCGCTAAATCGTAGGACAATCCTAGATTAATTAAAGATTGTTAGAGAGAGTTGAAAGGAGCGCCTGCCTTACAACGGGATAAGCACAGGTAACAGAGCCGATGGCAATAGAAGCTAAGAAAGAAATGACAGCTAATCTGTCGGTTTTTGACAGCTAATCTGTCGCCACGGACAAATAATTTGTCGCTCTACTCAACAACATGGGCAGTACAAGATTCGAACTTGTAACATCCTGCTTGTAAGGCAGGCGCTCTACCGTTGAGCTAACCGCCCGAAAGATGCGCATTGGGCACAGTTAAATATATTAGCAGATACCTGCACATTTGTTGCTGACTTTCTCTAATTTCGGTAACCGTTTCCGCTAATGCTCTGAAAACTAGCAATCGACCAGGCAATTTGTCGCTTTCGGTTTAGTCAGTGCATTTGTACCTGCTACGATGCTGAAAGCATTGTCTGCCTGTCTCCATCATGCCTTCTGGTCGGACTCATGACAG # Questionable array : NO Score: 3.01 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGACAGCCCTCTCAGTCATGGGCGGGTTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-11.10,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.64 Confidence: LOW] # Array family : NA // Array 1 41677-43307 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJPI010000077.1 Leptolyngbya sp. FACHB-321 contig77, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =================================== ================== 41677 29 100.0 33 ............................. CGCTGTCTCTTCATACGCTTGCAGCCGTTGCCC 41739 29 100.0 32 ............................. TAAGTGAAGCACAACATCAGCGAGACAGAGAA 41800 29 100.0 34 ............................. GCTAATTGGGAACTGAAAATCCACTTTCTTGAAC 41863 29 100.0 32 ............................. GATGGTGTCATTCCGCCGCTTGCCTCATCGCC 41924 29 100.0 34 ............................. CAGGCTTAACCCAGTCTGAGCAAACCCGTTGAGC 41987 29 100.0 32 ............................. TCATTTTGTCGCTGACGGCAGTAAGTGTGACG 42048 29 100.0 33 ............................. GTCTTAACGACTTTATAGGGGCACTCAAGAACC 42110 29 100.0 32 ............................. ACTCGCGCCGATTTGCAACAGTCGAAGCGGTG 42171 29 100.0 33 ............................. GATGATATGCGATCGCGCGGGCTAGAGAGTCCC 42233 29 100.0 33 ............................. TTATCTACTGGGTCAGTCGGTTGCTCAGGATTC 42295 29 100.0 32 ............................. CGATCGCGGTTCGTCAGCAACGACTTAGGAGC 42356 29 100.0 33 ............................. TAATAAACGTTGCGCCATGAGATTGGCAGTTCT 42418 29 100.0 32 ............................. GGGCGATCGCGCAATATTGCAGCACTCTTGCC 42479 29 100.0 32 ............................. TCTGTGATTGTGGAAGCCGTTTGATTATGGGC 42540 29 100.0 34 ............................. CCAAACAGCCACGCTTCAAACGCAAGGGCGATCA 42603 29 100.0 32 ............................. AACGCGTCGGTGATGAGCAAAGAGCAGACGGG 42664 29 100.0 32 ............................. GTGTGCTCGTTACCGTTGGTATGCCCTGAGTC 42725 29 100.0 32 ............................. GGACTAGTGTTCACGCTTCAATGTGCCGTTGC 42786 29 96.6 32 ...........................T. TCAATCTTCAATAGTGACTCTTCATAAATGGT 42847 29 96.6 34 ............................A GCTGGTTCCCGTACTTAGTTACGGGTGAGTCCTC 42910 29 100.0 32 ............................. GGTATGTCGTGCCCTACTCCCACCACTACGCC 42971 29 100.0 31 ............................. TTGGTGGCACCTTCCCGACTGATTCGCTTGC 43031 29 100.0 35 ............................. CGCAACTTGACCCCAAACCCATGCAGTCGGAGATC 43095 29 100.0 33 ............................. TAGCTAATGATTTGAGAACAGTCTTCAGATGGC 43157 29 100.0 32 ............................. GTGGTTGCAAAACTGCGGAATCTTGCGGGTCA 43218 29 100.0 32 ............................. TTAGCATTCTGAGTGGCAGTCCACCCGCTGCC 43279 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= =================================== ================== 27 29 99.7 33 GTTGTCCCCACGAGCGTGGGGGTGCCCCG # Left flank : AGACCCACTTCGATTTGGAGGAAATCGTGCGCCGCAAATGCCGCGAGAAATTCTTTCAGGCTCGCTTAATGCAACGCATAATTCGGGATGTTGATCAGGTCTTGCAATACGATGGTGCAGACGAAATGGCAGAACCCGTGTGTTTTCTTTGGGATGACCAGGTAGAGCAAGTTGAAGGCGGCAAAGATTGGTCAGAGGGACAATTGTAGTGGTTGTCTTTATTGTGGAGAATGTTCGCCCTAGCCTCAGGGGTGAACTAAGCCGCTGGTTGTTTGAAGTCAAAGCCGGAGTCTTTACAGGTAAGCTTTCTGCCCTTGTGCGCGATGAACTCTGGCAGTTGATTGGGCAACAACTCGGTAAGGGGTCTGCTGTGATGATTTATCCAGCCAGTAATGAGCAAGGCTTTAATGCCAAAACCCTTGGTAATCCGTCTAGACGCTTGGTAGACATAGAGGGACTACTGCTAGTCAGAACCTAGCAAAATCAACTACTTTGTAAGT # Right flank : GATGGGCAGCAGCACCGGGAAAGGCAAAAGACGTTGTC # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTCCCCACGAGCGTGGGGGTGCCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 103513-108993 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJPI010000082.1 Leptolyngbya sp. FACHB-321 contig82, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 103513 37 100.0 36 ..................................... AGATTGCCGCAGGGATGGCAATAATCGGCAATCCAA 103586 37 100.0 39 ..................................... ATCTGTGCCGCTAGCGCGAATAAACCCATTTCACGCAAG 103662 37 100.0 35 ..................................... AGGCATTGAAGAACGTATGAACGAGATCATTGAAG 103734 37 100.0 35 ..................................... CACTTGGTGGACGTTCCACGGTTTAGCGTAGCTAG 103806 37 100.0 35 ..................................... CTAGTCCTGAGTTCTTTTACGTTACCTACGATCAA 103878 37 100.0 35 ..................................... GACATTGCAAGCATAGCACCATAGCCAGAAGTACC 103950 37 100.0 39 ..................................... GCTTTGGTGAGGACGTTGTCTTCACCAGCGGTGGCTATG 104026 37 100.0 35 ..................................... TTTCGAGATTGGCACAAATCCATTAACAACTTTTG 104098 37 100.0 39 ..................................... GAACAGCAATCTTTGTGTTAATAACTTCTGTGGCTGTTC 104174 37 100.0 35 ..................................... ACAAGCTGTACCAGATAGCAAACTGGGTATCATTT 104246 37 100.0 35 ..................................... GTTAGCCAGAGGCGTTAACGGTGAAACCAGCGCAG 104318 37 100.0 36 ..................................... ATCTGAGGTTTATTAAAGTTGTACTTTTAAGTTCAA 104391 37 100.0 34 ..................................... AGTTCTTGTGAATAATCATCTCCACTACTAACAC 104462 37 100.0 35 ..................................... CCCTGGTATCCCTTTTCTGCCTCCGATACCGATGC 104534 37 100.0 35 ..................................... ACTGGTGTGGATTGCTTTGCTTGTCTGTGTGGTTG 104606 37 100.0 36 ..................................... AACGTTTTTATCTATTTGCCATTTATTAGCAGTGTT 104679 37 100.0 35 ..................................... ACATAACCTTTTTCGCCTAACCTCCAATACCTAGC 104751 37 100.0 34 ..................................... GGAAGCAGTACAGCCCTTTCCTATCGTCAGTATT 104822 37 100.0 35 ..................................... ATGAACACATCATCTGAGAAAATCAACTGGCAGCC 104894 37 100.0 34 ..................................... AAGACCCGATCCTGATTCACTTCGAGAACTTCGA 104965 37 100.0 34 ..................................... CCGCTCCGTGCCCTCAATCGGCCCGGCTTTGGTC 105036 37 100.0 37 ..................................... AGCAGTAGTGCTAAAGCTGGCGATCTAGCCGATGGAA 105110 37 100.0 34 ..................................... ACCTATACCTACTCCTGCATAGCGCAGGGTGGGG 105181 37 100.0 36 ..................................... CAGTGGAGATGGCCAGCGACCGCACTGGCTTAGAGA 105254 37 100.0 35 ..................................... CTAGAAGCATCAAATGAACCAAAAGCAACTGATAG 105326 37 100.0 34 ..................................... ACCTGGTAATGAGAAGCACGCCTGCTTGGTGTGG 105397 37 100.0 34 ..................................... TTCACCCTGAGACTTGCAACATTTACCCCCTTGC 105468 37 100.0 33 ..................................... TAGGTTGCCGTGGGTTCCCGTGGTGGAGTTTGC 105538 37 100.0 34 ..................................... TCATACACCATAGACGACCATATCGCAGCAATGA 105609 37 100.0 35 ..................................... TGGGAACGTAATCAACTGCTTGCTGCACCATCTAC 105681 37 100.0 35 ..................................... AGACCTCTTAGAAAAGCTGCAAGACCTGTTGGAAG 105753 37 100.0 35 ..................................... ACGTCCCCCGATGCGTTTTCTTCACTGTACTGAGC 105825 37 100.0 35 ..................................... AATCTGTTGTGTGTTGATGCCTGCGATCGACGTAG 105897 37 100.0 35 ..................................... AAGTCTCTAGCCGCTAAGGGTGCCGATGACCCCAA 105969 37 100.0 34 ..................................... AGATGTAAGCTGCTTGAGTTTATCGGGACTGCAC 106040 37 100.0 38 ..................................... TCTAAGCAGGAAGCGCTTGAAATAGCGAAGTTAAAAGC 106115 37 100.0 35 ..................................... ATGCAATCCCCTGGTATGGCAGCAGCGGTTCACCT 106187 37 100.0 36 ..................................... GCGTAGCACTGGTAGACCGTAGGGGGTTGCTGGGGG 106260 37 100.0 34 ..................................... AAAAAGTGAGAAAATTAACGCTACAAAATGTCAG 106331 37 100.0 38 ..................................... CTAAAGGAATAGTATAACTAGCCCTTTCTAAGCTAGAC 106406 37 100.0 35 ..................................... TTCGATTTTGTTATGCCTCAGGTGCTAGCCTTTGC 106478 37 100.0 39 ..................................... AAAAACTGCGATGTCTCACAAGTCAAAAAACACGTTATC 106554 37 100.0 36 ..................................... CAGTTCGCCACTAGCCCTTAGAGAGTCTACATAATT 106627 37 100.0 34 ..................................... TTAGACAGTGCAGGCATAGTAGACGTAGTGAACG 106698 37 100.0 42 ..................................... CACAACGTTCTACGGGATCGCCCAAAACCGATTATCTACCGG 106777 37 100.0 36 ..................................... CAGCCATCATTACCGATTGTGACGATTATTTCTACA 106850 37 100.0 34 ..................................... TTGCTTGAGGCGATCTATAGCGTCCTGTATGTGT 106921 37 100.0 36 ..................................... AAGATGCTAGATGCGAACGACGAGCCGGCCAGCCAG 106994 37 100.0 35 ..................................... AGAGGTTGGATCACCCCTTAGAACGTCTAGAGGGT 107066 37 100.0 37 ..................................... AGAGACGGCAGGCTTGTTTCGATTTGACAACAACGAG 107140 37 100.0 36 ..................................... AGACACAGTTTGAAGCGCTCTTGGATCACAAATTAA 107213 37 100.0 35 ..................................... AAGCAGTACCTTCTGAATGGCGCAGGCATAAGCAT 107285 37 100.0 36 ..................................... ATACTCGGGCTTTGCGAACGTAGTCCGGAAATCCCA 107358 37 100.0 35 ..................................... TTTTAATACTCAAATGGATGAGGCAATAGAATCCA 107430 37 100.0 34 ..................................... TAAGTGGGGACACTTGATCCCTACTCTGATTTTT 107501 37 100.0 35 ..................................... GAAAGATTCGCGTTAACAGTGCGGCTGGCGAGTCT 107573 37 100.0 37 ..................................... CGCCCAATTTTTGGGAATTGCGACTCGCACGATCCAA 107647 37 100.0 37 ..................................... CACAAGTGAAGAAGGAGATCGACCACTCAAGCTTAAG 107721 37 100.0 37 ..................................... GAAGACATCGACCCGCTAACACCAGGTAATCAAGTGA 107795 37 100.0 38 ..................................... AGCACCGATCGCAAACCCTAGCGGAGTTGTGGCAGCGT 107870 37 100.0 35 ..................................... TCTACGCCCAAACCCTCTAGACAGCTTGAAAACAG 107942 37 100.0 36 ..................................... ATACTGCGTTTGATCTTGTAGAAGAATATAAAGAGT 108015 37 100.0 36 ..................................... AGAGTAGCGATCGTTGTAGCCCACATCAGGCAACCC 108088 37 100.0 35 ..................................... ACAGTACAGAGACAGGAGCGACGAAATAAGGACAG 108160 37 100.0 33 ..................................... ACCTACCAGCACACCTTGAACGGCCTGGTAGTT 108230 37 100.0 38 ..................................... AAACGAGTGATGGCTGGGGCGTAGTTTCAAGGGTTGGT 108305 37 100.0 36 ..................................... AAGGAGTGGCTTACTTTTCTAATGCGGCTGCCTGGG 108378 37 100.0 37 ..................................... AAGAGAGTGATGGCTGGAGCGTAGTTTCAAGGGTTGG 108452 37 100.0 35 ..................................... GGGGCAATAAGTGACCCAGGCGGCGCAGTTAACGC 108524 37 100.0 38 ..................................... AGAAGCGATCGCACTTGGTAAAGCGCTAGCCGTCACGC 108599 37 100.0 35 ..................................... CCGTTTGTAGTTTTCCACCTGTCGCCGTGCAAAAC 108671 37 100.0 35 ..................................... AAGCTCGATCGCCACGGTTGCCTTCCGGTGGTAAA 108743 37 100.0 35 ..................................... CTAGAAGGGGAGCCGACTTGGTACAAGCTTGGCGA 108815 37 100.0 34 ..................................... GTAACTGCTACTGGCTGGGATGCTTTCTTTAAGT 108886 37 100.0 34 ..................................... ATTTCACCCGCTCAGATTGGGCATCTAACCAAAG 108957 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================== ================== 76 37 100.0 36 GCTGCAAACAGCCTGAAACCCTTACAGGGATTGAAAC # Left flank : CACAAAATTCTTAAGTCCTATGGACAGTGGATGCAGTACAGCATGTTTGAATGTAATTTGACGGAGACGCAGTATGCCAAGTTGCGTTTGCGTCTCAGCAAGCTCATTAAGCCCGAGCAAGACAGCCTTCGGTTTTACTTTCTCTGCGCGTGTTGTCAAGCTAAAGTCGAGCGGATCGGTGGTGAAACTGTCCGCGATGAAACGATCTTTTTCGCCTGACTTTAGCTCTTTCTGTACTGATGTCCCTTTGCAAGCGCGGGTGGGGGGCTGTTTTTATGCAGGCTTGCAGCATTGAGTGGCATCACCTTGACAGTCAAGGTTTCAGCGGTTACGACCAATGCTCTCTCCGCGCAATCGTCCAAAAGCCGACTAGACTTGCTCTGTGGGCATAAAGCGAAGATAACGTTTTACCAAACCAGTACTTTGAAATGCTACGATCCTGTTGATCCGCGCAGTCGAACCTTGAAAACTCCATATAGACGATATTTCCAGTGCCCGCC # Right flank : TAGAGCAGATTCAAGCAAGGCTAGGTCGTTGCAGGCTGCAAACAGCCTGAAACCCTTACAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTGCAAACAGCCTGAAACCCTTACAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.90,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [50.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : NA // Array 1 31489-30800 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJPI010000067.1 Leptolyngbya sp. FACHB-321 contig67, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 31488 37 100.0 35 ..................................... CTTGACGTTGTGGATGCTCCACCCTCCTTTTTGAA 31416 37 100.0 35 ..................................... TTTTGAATGACTAACTCAGACGGCACAGAACAAGC 31344 37 100.0 35 ..................................... TGAATGAAATCACTGAGCCTCAAACAAACGGTTCT 31272 37 100.0 36 ..................................... CTACCCTTGCGTTTATCCTCACCCATTACACCCGTT 31199 37 100.0 35 ..................................... CGGTGTCACCCCTGCCCTCAAGTCGTGCCTGAATG 31127 37 100.0 36 ..................................... GCAATTCACCATCCATGCCTTCCAGCCACTTCGTAT 31054 37 100.0 35 ..................................... CGGTGTCACCCCTGCCCTCAAGTCGTGCCTGAATG 30982 37 100.0 37 ..................................... AGCTAAAAAGTCTTTTTGGTTGCGTGGACAGTCCATT 30908 37 100.0 36 ..................................... AGTACCTCCCTTCGCTCGCTCAACGGTCTTCAAACA 30835 36 81.1 0 .CC.........A.....-...G...TG......... | ========== ====== ====== ====== ===================================== ===================================== ================== 10 37 98.1 36 GTTGCAATGACTGTTTTGGCTTAGGGCAGAATGAAAG # Left flank : CTAACTAACTAGGATGATCGAGGGGGTTACGTTTTACCACTGCAAGGTGGATACTTTCAGACCCCTATGGTAGCTGCTCGCTCTTGGTGAGGTGCACACCTTACCCCACTACAGCAATGTGTGTGGCTGTCTAGGTTATGAGCGAAGTTAAGGCATCGGTTCGTTACCTAAATTCAATCATAAATTACGCGACTAGATAAGTGAGTATGATCCGCAAGGATCTATATGTCTTTAGCAAACCAGAGCTTCTGTTTTGTTACTGGCGTAGGGATGGTTCTCCAAAGTGGCTACTGAATCTTCCCAATTTTTTTTGGCAGACCGAAGCGGGAGTAATACTCCTAGCACGTTTGCCAAATTCCTGTATTCCCTGCTAGCTATAGGTTCTACAAGCGCTGCTATTTGCTAAAGCCTTTCCCTAAAAGGTAAAAGTGAGGCAGAAGCAGAGGTTTGCCAAAACCAGGCTTGAAACTGTTGCCAGTTGGGAATCTTGATGCCAAGGG # Right flank : AAAAAATTGAGAGTATTGGATTTATAGCCGAGCAAAGCCGCTATTTTGGCATGTTGGATGTCATAAGTGGTATCAGTTCTATTACAATTCGTCTATGGGAAGGATGAAAGAGGCAGGGGTCTGCAAACTCTTGCGTAAAGTAAAATAAACAGCACAGTATATTTAGAAAACTAACGCACCCAAGCATAAATGTTTGGGTGCGTTAGTTTTTTGGTGGCAGCCAGTGAGGTTGACTAACTTACATCTTCAGTTTCCTGCTAACCTTGCTTTTAGGAGCTTGCTATATTGCTTCAGTCTTCTCACACCGCTAGCGACTAGCGCCATGTAACGTGGACTGTACATGAACTTCTGGAAATTAATTCTTTAAAGCTAGTTTTTAGGGTAATAAGAACTGTTTAATCAAAAGATTCTGCCGCTCAAACGACAGAATCAAGGTTTCAACAATTTTTGGAAATGAACTCTTTAAAACTGCTGAATAATTCTTTAATGTACAGCAAATG # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAATGACTGTTTTGGCTTAGGGCAGAATGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-4.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 2 80853-78585 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJPI010000067.1 Leptolyngbya sp. FACHB-321 contig67, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 80852 37 100.0 34 ..................................... CAAGTGAAGTTGCTGCACACGCTTAAAGCCCAAC 80781 37 100.0 35 ..................................... AACCCTCCTAAAGATGGATGCTGCAAGTCTACAGG 80709 37 100.0 34 ..................................... GATCATATACGGTAGGTGGGGCGTAACGTTTAAT 80638 37 100.0 34 ..................................... CTGAATGATAAGCCCAAAGTGGCGATCGCAAACC 80567 37 100.0 35 ..................................... TGGCACTCGCGCCACTGTTCCTGGAAATGAGCGAT 80495 37 100.0 34 ..................................... CAATACTCAAATGGATGAAGCCGTAGAATCTATC 80424 37 100.0 42 ..................................... GCAGGGGTTGGTATTTGACTCTGACTGGCAGGAGCCGGTGAT 80345 37 100.0 35 ..................................... AAAGCCATTTACAAAGAGCCGCATTTAACCGTCAC 80273 37 100.0 35 ..................................... AAACTGATACTCTCCCCATACACGCTCCTCTTCAG 80201 37 100.0 35 ..................................... CATGTTTTAACCGTGTTACCTGGCTACCCTGAGAA 80129 37 100.0 35 ..................................... CGCGAAGTTCGTCGTTACGCAGGCATGATGAAATA 80057 37 100.0 34 ..................................... CAATCACAGCGGGAAGTCCCACAACGGCATCCGG 79986 37 100.0 34 ..................................... TAGAGCAGATTCAAGCAAGGCTAGGTCGTTGCAG 79915 37 100.0 36 ..................................... TCTCTTCTCAGTTCTGAGAGTGTTGGCGAGTCGTGC 79842 37 100.0 34 ..................................... TCATGATTGAAGATACAGGGGATTGTGGACTAGG 79771 37 100.0 35 ..................................... GGCATACTGGTCAATGTTGACGGTTGAAACTGCTG 79699 37 100.0 34 ..................................... CAAGTGAAGTTGCTGCACACGCTTAAAGCCCAAC 79628 37 100.0 34 ..................................... AAAATCCCTAAAAAACCTCACGAAAATGAGTACA 79557 37 100.0 38 ..................................... CGCTTGGCAGATCGGCACCGCCGCATCATAATAGGCGC 79482 37 100.0 34 ..................................... TTAGTGCGCGTATCCCTAGTCACGGCTATTTATT 79411 37 100.0 36 ..................................... GGCACGCTCAACATTACGCCGCTAGTCGCTCAGTTT 79338 37 100.0 34 ..................................... TGGTTTGATCCTGGTAGCGGAACGATTGAGGGTG 79267 37 100.0 35 ..................................... ACAGGCAGCGACTGCAACGCCACTTAAGAACCTTG 79195 37 100.0 35 ..................................... CGTGTAAAAGATTTTTGAGGGACGATTGAAATCAA 79123 37 100.0 35 ..................................... CAGGAGTAGGGAGGGATGCCACCAACAGCGCTCAG 79051 37 100.0 34 ..................................... AGGTCGTCACTGCCGTCAAAGGCACCGTAGCCCG 78980 37 100.0 34 ..................................... CTTGTATTATTCTTGGAGAAATCGCTATTGCTCA 78909 37 100.0 34 ..................................... CCGAATCCTGAATACACACCTCCGCCCAGTCCTT 78838 37 97.3 34 ...........................A......... TACTCGTGGCGGGTATCGCGGCGATCGGGTTGAT 78767 37 100.0 36 ..................................... AAAGGTGTGGCAGGACATTATTGCTAAGGTCGCTTT 78694 37 100.0 36 ..................................... ATGAACTACCAGGGATTCACCCTGACCCGCTAAAAT 78621 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================== ================== 32 37 99.9 35 GCTGCAAACAGCCTGAAACCCTTACAGGGATTGAAAC # Left flank : CT # Right flank : TACAGGTTCGCTGATTAGCGCGATCGCCTGCCTTATCCTGCCATACCAACTTAAGACCCAAAGTTGGTGCTGTGGAGAGTCTCTTTAAGACTGCAAGGTCCTTCAAGCTGATGTTGGCTCAAACCCTCCATGGCTAGGCAGTTCAGCAAAGCTTAAAACCTATTGTTGTTCCCACGCACCCGTGATCGATCATGATGGATCGAGCGTCATTGGTAGGGAGGTAAAGGCATGGCGAAAAAGAAGAAGAGCGAACCGCTGACAGGAGAAGCGTTGCTGCGAAAGGTGAAAACGTTAGACACCCTGAGCAAAGAGCAGAAAGCAAAAGCTTGTGGGTACTACACCGTCACCAAAGGTGGCGTGGAGCGCGTCAGCATGATGCAATTTCTGAATGCCTTGATGGAAGCAGATGGCATTGAGCTGGATGGCAAAGCAGCCAGTGATGGTCGGGCTGGACGCAGTGCAAGCTATCGCCTTAGCGTGCAAGCCAACGGCAATTTGTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTGCAAACAGCCTGAAACCCTTACAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.50,-3.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : NA //