Array 1 32-1098 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXJO01000017.1 Salmonella enterica subsp. enterica serovar Newport strain BCW_2022 NODE_17_length_109121_cov_5.37331, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 32 29 100.0 32 ............................. CCTGGCGATCGCATTTGGGTGCGGGAAACATT 93 29 100.0 32 ............................. CCGAATATGGTGATAATGTTGCACCTTCGCTC 154 29 100.0 32 ............................. GACTCGGCCTGTTTTTTGATTTTGACAATCAG 215 29 100.0 32 ............................. CCAATAACCGACGAGGGCAAACGCCGTGCGCG 276 29 100.0 32 ............................. AGGACTGAGGGAATAGGGACCGTAATTGTAAA 337 29 100.0 32 ............................. ACAATGTTGCGTCTAATTCTCATTAATTAAAA 398 29 100.0 32 ............................. CAGACGAAAATCAGCCCGCATATTCCGACACA 459 29 100.0 32 ............................. AACAGTGGTTTTAGGTTGTCGGTGCTGATCCC 520 29 100.0 32 ............................. ATTAAACAACAGGATTTTGCAATTACTGTTGG 581 29 100.0 32 ............................. CAGACGGCAGCAGCGTGAAACACGTCAGTATT 642 29 100.0 32 ............................. TCAGCTGTTCCATACTCACCCCCTGTGCAATC 703 29 100.0 32 ............................. GCGATGTATGCCGCGACGATCGAGAGCGAACT 764 29 100.0 32 ............................. CAGCAGATGAAAAATATTTACAGATTGGTAAA 825 29 100.0 32 ............................. AAAAAATCCCGCTGACAATATTTTGCCACCTC 886 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 947 29 100.0 32 ............................. TTCCAAAGGTACTCCCATATCTCCAGCCAACG 1008 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 1069 29 100.0 0 ............................. | A [1096] ========== ====== ====== ====== ============================= ================================ ================== 18 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCTTCCGATCTCGGATAATTTATCATTG # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 229824-231009 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXJO01000007.1 Salmonella enterica subsp. enterica serovar Newport strain BCW_2022 NODE_7_length_248231_cov_5.03276, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 229824 29 100.0 32 ............................. TGCTGGCGGCAAAAGAACTCGCTAAATGGGAA 229885 29 100.0 32 ............................. CAGTGCGGCAGCGCGCAATCGAGACACGCCAT 229946 29 100.0 32 ............................. CACAAAACGCCAGTGGCATGGTACAACCCGTA 230007 29 100.0 32 ............................. GCGTGACCATGTTTAACTCTAAATCAGGCCGT 230068 29 96.6 32 ........A.................... TCATGCTTTCGACTAAATACTACCGCGACAAC 230129 29 100.0 32 ............................. AAAATAACAACATTATCAGTGTGAAAAGTCTC 230190 29 100.0 32 ............................. AGATATGAAAAACGTAAAAATTTACACCGCCA 230251 29 100.0 32 ............................. CAATAGGACAGCCATTCGAGCGCCCAGAGTTT 230312 29 100.0 32 ............................. GTCAGTATGCACTGCTTGATAAAGTCAGGCCA 230373 29 100.0 32 ............................. AACTAACGTCTATAGCTAAATGTAGAGAAAAC 230434 29 100.0 32 ............................. CAGTTTGGAGTCAATGTTATTTCTTCAGGTCA 230495 29 100.0 32 ............................. TCTCGCTGGTTGCTCCAACTCCTGATATGCCG 230556 29 100.0 32 ............................. TAAAAATCTTCTTTCATATAACCGTAAGGGTT 230617 29 100.0 32 ............................. AGGGTTTTGTCACCTCAACGGTCGGGAGTGCA 230678 29 100.0 32 ............................. GTGCAACAGTTTCTTACCGCAAGCAGTTTGAA 230739 29 100.0 32 ............................. ATCATCGGGATTCATTTTGTTGTCCGGGTGGC 230800 29 100.0 32 ............................. CGGTGCTCTATGTCTAAAAATAAAAGCGGTTC 230861 29 93.1 32 ........T...................C AGCACAATCATTATTAGATGAACTTTCATCAA 230922 28 96.6 32 ............-................ GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 230982 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 20 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTAATGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 247679-248195 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXJO01000007.1 Salmonella enterica subsp. enterica serovar Newport strain BCW_2022 NODE_7_length_248231_cov_5.03276, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 247679 29 100.0 32 ............................. CTGGAACGGCAGTATTTAAAAGGGGTTATTGA 247740 29 100.0 32 ............................. TGGGCGCCCGGATTGTTTGCGTGCGGCGACGG 247801 29 100.0 32 ............................. TTGATTTACCCGCCACTTATTCCCCATTGCAT 247862 29 96.6 32 ..........................T.. GGACTATCAAACCATCTATGATGCCAATTTTA 247923 29 100.0 32 ............................. CGCGGGGCTGGTATTCGATACAGACCCGGCTA 247984 29 100.0 32 ............................. GGAATAAAAATGAATTTGAGTCAACTCTATAA 248045 29 100.0 32 ............................. CGTTAGGCTGCGGTTGGGCACCGAAGAAAAAA 248106 29 100.0 32 ............................. ATTATCCCGGAAATCGTGATCAACTACGCAGG 248167 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 9 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGTCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGG # Right flank : ATTGTTATTGCGGTAACGGATAATTTATCATTGTGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [68.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //