Array 1 33039-30668 **** Predicted by CRISPRDetect 2.4 *** >NZ_VIPA01000002.1 Vibrio cholerae strain A12JL36W25 NODE_2_length_48234_cov_12.072625, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 33038 28 100.0 32 ............................ TGTCGAGGGTTCTGTTTTTAAAGGTCTTGTTC 32978 28 100.0 32 ............................ GCTCTGGCTCGAATCGTGAGTTTCGCATGACG 32918 28 100.0 32 ............................ CGTACAACCAACGGGTAATGTTGCAGCGGGTT 32858 28 100.0 32 ............................ TTCACGTTCTTGGCCTTCGTATGTCACCTTGG 32798 28 100.0 32 ............................ GTCAGAGAACGCGCGGTTTGTCTCATGAAAAC 32738 28 100.0 34 ............................ ACAAACGAACCTTCTTTACCCAAATCAATTCCAA 32676 28 100.0 32 ............................ TCTGCCGCCCTTGAAGCTGATGTTGTTAACGG 32616 28 100.0 32 ............................ TTAAAAATTCTTAATGGTTTAGTAGAGATATC 32556 28 100.0 32 ............................ AGCCGCGAACGGCGTGTTAGTCTCAGGGGTAA 32496 28 100.0 33 ............................ CTTATCGACAAGCACACGCCGTTATACCTGCAT 32435 28 100.0 32 ............................ CGCTAAATATTGTGGGGTGGTGTCCAATGCTT 32375 28 100.0 32 ............................ TTCATAAGGACCAAGAATGATGCTAACCTTTT 32315 28 100.0 32 ............................ AGTTAGCGAATCAAGATCAAGATCAATTTCTG 32255 28 100.0 32 ............................ TCAAACCTTGATCCTTACTGCTGCTTCTGGTG 32195 28 100.0 32 ............................ TATTACCGAGACTTCACTTTTCATCTATCAAA 32135 28 100.0 32 ............................ AGAAAGGTCTTGAAGCAGCCAAAGCTGAAATT 32075 28 100.0 32 ............................ TAGTCACTCCCTATTTAATGTTGCGCTTGCCG 32015 28 100.0 32 ............................ ATTTGACTGGACAATGTTTGACGATCAGCCCT 31955 28 100.0 32 ............................ ATCGCAAGGGATTGCATTTGATGAAACAAGAT 31895 28 100.0 32 ............................ ATGATGTATCTCCTATAAAAGATTGATGAGTT 31835 28 100.0 32 ............................ TGATCGGCGAAGATTTTGGCGAACTCACCTTA 31775 28 100.0 32 ............................ GTTGGCGAACTTTCAACAACTAAAGCCCTTCG 31715 28 100.0 32 ............................ AGCATGGGAAAGGCGATGATCATTCACGGTGT 31655 28 100.0 32 ............................ ATTATCGAGCCTAGCCACCTCGTAACCTTTAG 31595 28 100.0 32 ............................ AATTGATTGGAGCGCATAATGATTTACTTACG 31535 28 100.0 32 ............................ ACCAGCCGCGACCGACTGAGAAACACCACTCT 31475 28 100.0 32 ............................ TATTTGGAAGCGCTGGCCTTTCTGGGGCTCTC 31415 28 96.4 32 ...........T................ ATAAAAGAAAAACTGTCACCGAAAGTGTTAGA 31355 28 96.4 32 ...........T................ TGATTCGTGCGCAAAAGAGCGAAAAGCTTATT 31295 28 96.4 32 ...........T................ AAGAATCAAAGAACCCAAAATAGTTGGATTTT 31235 28 96.4 32 ...........T................ ATAAGCCGACGTAATGCGAAGTAAGAAACAGC 31175 28 96.4 32 ...........T................ TAACAGTCTTACGCTTAGCTCCTCCATGCTCT 31115 28 96.4 32 ...........T................ ATAGCAGAACTGGAGTAAGTGGCATTGTTCAT 31055 28 96.4 32 ...........T................ GTCACCGTTGGCATTAATGGCATCGACTTTAA 30995 28 96.4 32 ...........T................ TGACAAACGGTCAGCTTCTTGAAACTGGCGAA 30935 28 96.4 32 ...........T................ CAGATTCGGCGTTTAAGTGCAGCGCTTGATAT 30875 28 96.4 32 ...........T................ AATGTCCGGCGATGTGGTTCATGCTTGCTCCT 30815 28 100.0 32 ............................ AGTCATATCGCATTCTCTCCCCAAATCACCGA 30755 28 100.0 32 ............................ ACTTACCTGGGTTGGGTTTAGTGCGTGGGTCA 30695 28 96.4 0 ...........T................ | ========== ====== ====== ====== ============================ ================================== ================== 40 28 99.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : ATGTAACTTATGTAAGCTTTGTACGCAAGCAGGTGAAATCACCCGAACGAATAGAGCGGGATATGCAGCAAAAAGCCGAACTATGGGCAGCAAAATCTGGTAAACCGCTGGTGGAATGTTTAGTGGATTTACAACAAAGCAAGCCGACAGCGTTGTGCTCCTTGCCCTTTATTTACTTGCATAGCCAGCAAACCAAGCAACGCTCACCAGAAAAAAACAGCAAGTTCCCGCTGTTTATTGAGATGCAGCCACAAAGCACATCACAAGATGGGAGCTTTGATTGCTATGGTTTGAGTAGCAAAGCGAATGGGCAGTCAATGTTGGCGACCGTACCGCATTTTTAAATTGAACGAAAAAGGGTAGTTTTAACCCTTTATTTTTGATCTTTAAAAATACGTTTTTAAAACAAATAGTTGCAACGGGTTGTTTTTAACAAGGTAAAAAGATGATTTTTATCCTAACAGCCTGTTGCAGCTTATTTTTATCGGTTTATTCTATTG # Right flank : AGAAATAAATATCCGACGGAAAAACAAAATCTCGATGGCCGCTTATCGGTTTCATTACTTCCAATAGCGCCAGCACCTGCTCAGTGAGAGGGATGCGGTGTTCTCTTCTTTTTTTCATTCTCTCTGTGGGAATAGCCCCAACTTTCTCATCCCAATCAATGTCGTCCAACGCGCACTAGATGGCCTAGGCATACTGGTGTGTTACCACTTATTTAGGCTTTCAGTAAGTGCAAATATCCAGCACCAGCCACACTGTAACTTCCATAACTAGATTTTTCGATATGCTCACTCCACCAGCTCATAAGCTTTCGACGAGAGTCTAAATAGTCGGTGCGGTTGTATGCTTTGCGTATTTGGTTTTTGTCAGTATGAGCCAATGCGGCTTCAATGACATCAGGTTCAAAGCCCTGTTCATTAAGAGTGGTACTTGCCAAAGCACGAAGACCGTGCGCGGTCGTTCTATCCTTAAATCCCATTCTGCTAAGTGCTTTATTAGCGGT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 10695-12961 **** Predicted by CRISPRDetect 2.4 *** >NZ_VIPA01000035.1 Vibrio cholerae strain A12JL36W25 NODE_42_length_12999_cov_11.224171, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 10695 32 100.0 34 ................................ TTCAACAATTCAAACAGTGGATCATAAGTTGGTT 10761 32 100.0 35 ................................ ATAAAGCTCATATAAACGCCATAAATTTGCATTAA 10828 32 100.0 33 ................................ AAAGAGTCCAGAGCAAACCGCATACATTAAGCA 10893 32 100.0 34 ................................ AGCGTATGCAAAGCAGATCCTGTAGTGACCTCCC 10959 32 100.0 34 ................................ CCGTCATGCCAAGTGAAGATGCGAGCCGTGAAGA 11025 32 100.0 34 ................................ AATAACTGTGACATGGAAGTAACAATGAGAGGTT 11091 32 100.0 34 ................................ TCGATCTCCGTTTCGCCAATGTAGTGGCCATGAA 11157 32 100.0 34 ................................ ATTAAATCCCCAAAAAATACGACGTGTACTAATC 11223 32 100.0 34 ................................ ACCCAAGATTTGCGCACCATGGCACTCACGGGCG 11289 32 100.0 34 ................................ ATTTTCGCCCTTTTGGGCAACGCGCATCAAAATG 11355 32 100.0 34 ................................ GAGGTCCAAACAATGTGTGGGAAATGGTTCACCA 11421 32 100.0 33 ................................ CGCCCTGTTTGGTGAGTTTGGTGAGCCTGCCGT 11486 32 100.0 33 ................................ TGCCAAACGCTGATACCACTCGCGCAACCAGTC 11551 32 100.0 34 ................................ TGGCCAATTAAGAAAAATTGAGTCAAGAGATACA 11617 32 100.0 33 ................................ TGCCACTGCGGCTGAAGAATTGAGAACCGTTGG 11682 32 100.0 34 ................................ AGATACCCGCGCATTCCTTTGAGAACTGCAAGAA 11748 32 100.0 34 ................................ TCGTTATTGCTCATGATCTATCCCTTGCGTTTGG 11814 32 100.0 33 ................................ TGGTGCGCCTTCGGCGACCTCACCACGCAAACC 11879 32 100.0 34 ................................ ATTAACGCCCTTTTCCGCCTCGTTAATGACATTT 11945 32 100.0 34 ................................ TGGTAACACCGCAATCGTGGTAGGTCGGCACAGG 12011 32 100.0 34 ................................ AGTTTTTGCGCACCAAAGAAACCGTTCTGCTTGT 12077 32 100.0 34 ................................ GTTTTCGCCCTTTTGGGCAACGCGCATCAAAATG 12143 32 100.0 34 ................................ CGGTTTAAAACCATGAATGAATCAGCTATTCAAT 12209 32 100.0 35 ................................ AAGCATCAAGCTGATACTGAAAGAGTAACCGTTTC 12276 32 100.0 33 ................................ CCATGCTTTTAGCTCTAGCGCCCAACGTTCCGC 12341 32 100.0 35 ................................ TTTAAGCTGGTAAGCTGCTGCGCCCATCACCCAAG 12408 32 100.0 35 ................................ TGAGTTGATCGGCTCAAAACGCAGGCATGTACTTG 12475 32 96.9 33 ...............................C ATGAATCCTTCAAAGGTGATCCAGCTGCGTCCC 12540 32 96.9 33 ...............................C CATCATCTTGAGTGGACCCCAACGCGTGGTCAG 12605 32 96.9 33 ...............................C AGTTACAGCACAAGTAAAAAAAGGCGAAAGAAA 12670 32 100.0 33 ................................ ATGGTCACTTAAGCTCAAATGACATTAGCTCAA 12735 32 100.0 33 ................................ TAACCGCTGCAACATACGCAGCGAAACGCCAGC 12800 32 96.9 33 ...............................C AGAATAAGGCTGAAGTAAAAAAGGTAATTGTTG 12865 32 96.9 33 ...............................C TCTACGCTCACGATGATGCGGTAGACCAGCTCA 12930 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 35 32 99.6 34 GTCGCGCCTCCCGCAGGCGCGTGGATTGAAAT # Left flank : CCATTTGTGATCAAAAAATAAGGAGCGAGCCATGATGGTATTGGTCACCTACGATGTATCCTTTGCCAGTGAAGATGGTCAAAAACGCCTCAGACAATTAGCAAAGGTATGTTTAGATAATGGAGTAAGGGTGCAGTATTCTGTATTTGAATGCGACATAGATGCCGCGCAATGGCTGCGCTTTAAAAATAAGCTGCTGTCAATTTACGACCCTGAAGTAGACAGTTTGCGTTTTTATAAGCTCGGTAAAAACTGGCAAAACAAAGTAGAGCACCATGGTGCGAAAGAAGCCATAGATATATTCAGAGATACCCTAATATTATAGTCGCTAGGCTTGAGTTCTCAGTAAAATACTGGGGATCTAGCGATTGCATAAGCTCTTTAAAAATATAGGAAATAATTATCTGTATAGATTCACACAAAGTAGTTTTGTGCTACCGCGCAAAGTTAGCGGTAACCAATAGAGTGTGTTAGTTTGTACGTGCCTCTAAGAAGAGGCA # Right flank : AAGTATTGTCACATTATTGCAGGCAATTTGTTGCCCGTGAGCAAGTTTTTGCCTCGCCAATTTTCGCGTTATCATGCGCTTAAAGCAGAATAAGCGAGGATGTCAAAGCCATGACAAAAGATATTA # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCTCCCGCAGGCGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.37 Confidence: HIGH] # Array family : NA //