Array 1 291195-299096 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFQO010000001.1 Bifidobacterium sp. W8110 NODE_1_length_768838_cov_234.816542, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 291195 29 96.6 32 ............................C CCCTCCTACCCGGGACGCACCTCCGCCAGCTC 291256 29 96.6 32 ............................C CAGCAGGTGTGCTCGGGCACGTTCCCCTCGCG 291317 29 100.0 32 ............................. TCGAGTCGAAGGTGTCATACTTCATTGTTTCT 291378 29 96.6 32 ............................C TCTGTCAAAGACCATGACCTGGCGGGGCGGCA 291439 29 96.6 32 ............................G GATTACCATGCAGTTAATCACCAAAGACATAG 291500 29 96.6 32 ............................C TACAATAATAGCACTACCGCCGGAATGGCGAT 291561 29 96.6 32 ............................G GGCACATGGTGTTTTCCAGATTTTCGGCTATG 291622 29 96.6 32 ............................C CGAAAACCCGGCCTCCGCTGCAAACTGCTTCT 291683 29 96.6 32 ............................C CTATATCAAAGCCTATGACCGGGTTCCGCGAT 291744 29 96.6 33 ............................C CATTATGAGTGATTGGCTGTGGTCCCCGACCAG 291806 29 96.6 32 ............................A GGAGCAGGAGATGGCTGTAAAACATAGAGCTG 291867 29 96.6 32 ............................C TGGCGGCAGGCCGCCATGTGGCAGTACACGGC 291928 29 96.6 32 ............................G TCGGCAAGCGTTTATTGTGGGCGCGAGAAGCC 291989 29 96.6 32 ............................C CGTTCGCCTTTGACCATGCTTTTGACCTGCGG 292050 29 100.0 32 ............................. AATGTCATTTCAATGAACCGTTCATCGATCCC 292111 29 96.6 32 ............................C GACAGAATCGTCTTCTTGCGTTTCCAGTCATA 292172 29 96.6 32 ............................G CCATGGCGAATCAGTTCAACGCGCTGAACAGC 292233 29 96.6 32 ............................C CAAAAGCCATAGGCGTATCATCAGTGGTCGGT 292294 29 100.0 32 ............................. ATCAAAATTATCGCCAAAGAACTTATCGTCAC 292355 29 96.6 32 ............................C TGTGGTTGACTTGGCACTAGACCGGCCACCAC 292416 29 96.6 32 ............................G GCGGGTTAAGAAACACGGTCTCGCCGCCCCAG 292477 29 100.0 32 ............................. CGAGGGTCATCCCGTCCCCAGGACCGGACCAT 292538 29 100.0 32 ............................. AGTGCGCAACGCGACGATGCAAATAAACATCA 292599 29 96.6 32 ............................C ATCATTTACGTCGGCGAAACGCTGGCGTGGTA 292660 29 96.6 32 ............................C CAGGATGATACCAGTGATCAGCCCGACCCGCA 292721 29 100.0 32 ............................. GATTACGACACGGCATGGTACGGTTCGCCAAT 292782 29 100.0 32 ............................. CCACGAATAGTCACGGATGGCAAGTATGAATT 292843 29 96.6 32 ............................G GTCATACAGTTTCCCGTCAGCCATGACAAACG 292904 29 100.0 32 ............................. CCCCCGGCAAAGCCATGACATATCCGCCTATG 292965 29 100.0 32 ............................. TCGTAGGCACCGACCATCCATCATTTTTGAAG 293026 29 96.6 32 ............................C TGAAAATAATATTGAACCAAATACTGCAATTG 293087 29 100.0 32 ............................. GAGCTGGGACGAAATCCAAGCAATTACGGATG 293148 29 100.0 32 ............................. GCATCTCATCATCGTAGTCGTCCTCATCATCC 293209 29 100.0 32 ............................. CCATTCCAGCACATCATGCCTGTCAGGCCATG 293270 29 100.0 32 ............................. ACCACTATGGATATAAGCGGGCCGTTTAGTAC 293331 29 100.0 32 ............................. CATCTAAGTCCATCCAGAGCATGGCTGACCAT 293392 29 100.0 32 ............................. CTGGAATGCAGGCTATTCGGGTGCAAGTTTGG 293453 29 96.6 32 ............................C GCCTTGGTGACCACTGATTGAGCCACGCCAGC 293514 29 100.0 32 ............................. GTTCCATCTCATTTTCCTTTCTGTCCACCATG 293575 29 100.0 32 ............................. GCCAGTGTCTGCCGCAGTAGTCTTTCCGGTTT 293636 29 96.6 32 ............................C GTATCAAAGACATGTTTGACCGGATAGGCGCG 293697 29 93.1 32 .........A..................C TGTACGGCACCGTTGCAAACCACGAAGGCATG 293758 29 100.0 32 ............................. GTGGTGAGCGTGTCGCGATACGTGAAAGGCTG 293819 29 100.0 32 ............................. ATGGGGATAGAGTACTATGACCGCGACGCGGC 293880 29 96.6 32 ............................C CGTGAGGCACCAGCAGGTGGGGGCCATCCTTG 293941 29 100.0 32 ............................. AATAGCACTTGTGCCGGTGTAGCACAAGTGCT 294002 29 100.0 32 ............................. GACTATCCGACGGTGCATAAACCACATCATCG 294063 29 96.6 32 ............................G GGGCGAGGGTGGATCCTCCCACCCCCATCGCG 294124 29 100.0 32 ............................. AACGCCTTTATCGGTCACCAGATAAGAATGCA 294185 29 96.6 32 ............................G CCACGAAACGCAACAAGGAAGGCAAGGACGAG 294246 29 96.6 32 ............................C TACGCTCCTATATTTACCGTCAAAACCATCAT 294307 29 100.0 32 ............................. ATGCTCAGGACGCATCAAGAGATTGCCGACTC 294368 29 100.0 32 ............................. CTTCCCCTCCGCCGCGATCTTCGTTCCACAGA 294429 29 96.6 32 ............................C AGGCCCAAAACGAACAATTCGGCAACAATCAG 294490 29 96.6 32 ............................C GGGTCAGCCAACAGAGCCGACGACATGGCCTA 294551 29 96.6 32 ............................C TTTCATACGTTGCCATAGACTCATTTTGCTCA 294612 29 96.6 32 ............................C CACGTATCACCTCAGATACAATCCCGGCGTAG 294673 29 100.0 32 ............................. GGCGCGCATACCCTCCTCCATGGCCTCGGCCT 294734 29 96.6 32 ............................C AACTACTATAATCCAACAAAATTCAAACCAGT 294795 29 100.0 32 ............................. TCGGACTGCCGATCGATCTGCCTATCGCGTTC 294856 29 96.6 32 ............................C TCCATCAACAATGGCGCACTGAACGAAAGCAA 294917 29 96.6 32 ............................A GGACAGAGGAGAAAAGGAAAACAACAACGAAT 294978 29 100.0 32 ............................. GAGTTGGTGAGGTTTTGGTCTTGGGCGAGCTG 295039 29 96.6 32 ............................C CATTGGGCACCGTCAACGGAAAACTGCAAACA 295100 29 96.6 32 ............................G CCTGGTGGCTCACACACGCGCGAGAGGTCATC 295161 29 100.0 32 ............................. TCACCTGATCCAGTGTGGCGAATTTTGAATCA 295222 29 100.0 32 ............................. CGCTAGTACCCTCTAGATACGCTTTAGCAAGA 295283 29 96.6 32 ............................G CGTTTCACCGGTGAACAGATGAACGCCATCAT 295344 29 96.6 32 ............................A GGAATCAAAAATGGAAGTGCATGAGATTGTCA 295405 29 93.1 32 ...A........................C ACCCGTGGATACATCGGCAAGGGCGTGATGCC 295466 29 100.0 32 ............................. GTCGCCCGCCAGATCCTCGCACCCTATGGTCA 295527 29 100.0 32 ............................. ACACGATTCACGCCACAAAGGACGTTAAACGT 295588 29 100.0 32 ............................. CAAGGTACACCCCGCCTGATCCGATCCCATTA 295649 29 96.6 32 ............................C GACCCTGACCCTCGCAAGCATGACAGCGGGCG 295710 29 96.6 32 ............................G GAAGCGATCTCGCTTTCGCCTTTTGTCCCGGC 295771 29 96.6 32 ............................G TGGTCATCGGCGTCTTTGCCGGTCTGGGCAAG 295832 29 96.6 32 ............................G GCTGGGCTTTCCTCCAGGCAGGCCGCACGGAG 295893 29 100.0 32 ............................. TCAACACGTTCATGACCATGCTGGCAGACGAG 295954 29 96.6 32 ............................C TTCGCAACCATCGGGGCGCTCGTGGTCACCCC 296015 29 96.6 33 ............................C TAGGGTCATACATGCGCCCATAGGGGTTGACGA 296077 29 100.0 32 ............................. ATCCAAGACCTCGGATATTGCCACTACGTCTG 296138 29 100.0 32 ............................. TGTTTGAACACATCCATGATCGCGTTGTTTCC 296199 29 96.6 32 ............................A GCAACCCCAAGCAGTATTTGTCGCCGGATTCC 296260 29 96.6 32 ............................C CACATCTCACTGGCTTTGTTGGGATACTGAGT 296321 29 96.6 32 ............................C TTGGCGGGTGCCATTATCTGTAATCCCGCACG 296382 29 100.0 32 ............................. CGCTTGGATGTCGCCCCAACTCATGCTTGTTC 296443 29 96.6 32 ............................G TAGGTGCCGGTGGAGGGGTCAATCTCGCCGGC 296504 29 96.6 33 ............................G CATCATGTGTCGGTAACATCTTTGGACAATGGT 296566 29 96.6 32 ............................G CCGGAGACAAACCCCGCCCCATTGGCCGAGTG 296627 29 96.6 32 ............................C ATTTCGCGGATACGCTCTGTATATTCCGCCAC 296688 29 96.6 32 ............................G TCGGTCGTCACCACCATCAATGATGAGCTCAA 296749 29 100.0 32 ............................. TCTACCGCGACGATCTCAATACTTTTTTCACG 296810 29 96.6 32 ............................C CAGAACCGATAGGCCCCGTGGTACACGGTCGG 296871 29 96.6 32 ............................A CGCCACGTGTAGGCGGGCATCCGGTACAACTG 296932 29 96.6 32 ............................C TCCTCCCCAGTGGTCCAGGAGACAAGCCCAGG 296993 29 96.6 32 ............................G CGCACAGCTTTGTGCGGATATTGCAAAAAGAT 297054 29 100.0 32 ............................. GCAGCAGATCCAGGTTTGCCGTGGCGCTGACC 297115 29 96.6 32 ..........................T.. CTTGCGCAAAAGTCTACGCGCACGAGCCTGTG 297176 29 96.6 32 ............................C ACGCTGATAATCAGCTGCTAAATCTCTGGTAT 297237 29 100.0 32 ............................. ACACCAGCACCCGGCAGACGCATACACCAACG 297298 29 100.0 32 ............................. AGGGTCTACTATCGGCCTGTGCCAATCGCTGT 297359 29 96.6 32 ............................G CGCCCGCTGCTGGTCGCCGGTCAGCACCAGCT 297420 29 100.0 32 ............................. TGAAAACTCTGCCACACGTCCAGCATGATATG 297481 29 100.0 32 ............................. GGACCGATGCCGGGGACATTGTGGGGCCACAG 297542 29 100.0 32 ............................. CACAAGATCGCCGCGCATTACGCCTTGCGAGA 297603 29 100.0 32 ............................. CCGTGGTCCGGCAGGCCAGCGAGTACACCCAG 297664 29 100.0 32 ............................. GCTTCCAGCACCTTGGCGGGGATGAGCATGAT 297725 29 100.0 32 ............................. GAGCATAATGCCGCGAGCGCGGACATGGGCGG 297786 29 100.0 32 ............................. GTTGCTTGCTTTATAGATTGTCTTTGCGTAAA 297847 29 96.6 32 ............................C AACTGGGATTCGAACGCCAAAGCCGGCATCCC 297908 29 96.6 32 ............................C CGGATATTTGCCTACCAGTATCTCGCTCTCAG 297969 29 96.6 32 ............................C CACTCGGGCAGGGTGCCCAGGAGCGCCCCCTG 298030 29 100.0 32 ............................. TCCTGGAGACTCAAAAGTTCGACACTACTCAG 298091 29 96.6 32 ............................C CATGTTCGCCGGCGGCCCCTACCCGGCCGGAC 298152 29 96.6 32 ............................C TTCACCACGAGTGCCATATCTCCAAGGTGACG 298213 29 93.1 32 .......................T....G GCTGTCGAGGGGATGCGGATCAGGATGTCGCC 298274 29 96.6 32 ............................A GATGGAAGAACAACCTCGAATACCCTCCCAAA 298335 29 96.6 32 ............................C CGATACGACAAAAATAGGATCTACATGCGGGC 298396 29 96.6 32 ............................G CACCACGGTGTCGTAAAAGTAGGTGCCGGTGG 298457 29 96.6 32 ............................C TCGGCCTCAAGGTCCGGCACGTCCACGAAAGG 298518 29 96.6 32 ............................C TCTGGCCGTATCCCAGCCATCAAGGTAGGCAG 298579 29 93.1 32 ..........................G.A TGTGTTCCACGCGGCCCCAGGGCATGATCAAG CC [298584] 298642 29 100.0 32 ............................. GACTTACGACAAGCAGTGGAATGAGCCAACAA 298703 29 96.6 31 ............................G ATACGATGCCCTGTTTTGCTATATTGCGCTA 298763 29 96.6 32 ............................G CTATGAGGATAAGCTGATCCATCTAGCCAACT 298824 29 96.6 32 ............................C AGGGTGGACATGTGGCTGAAACGCGGGAAACT 298885 29 100.0 32 ............................. AATGTTTGCAACAGTTACGGATTCCCTCAAAA 298946 29 96.6 32 ............................C GACAGGACCCTGCGGTGGGTCAAGGACCGGCG 299007 29 93.1 32 .................A..........C CGATCACCGGATTGCGTGACAACTGGTAGGTA 299068 29 89.7 0 ......T......T...........C... | ========== ====== ====== ====== ============================= ================================= ================== 130 29 97.7 32 GTGTTCCCCGCATCCGCGGGGATGATCCT # Left flank : CACATCACCGCTAGGGTTCGGGACCGGCTCTGGGAACGCATCACAGGGCAGATCCGAACCGGCAAGGCCATTATGGTCTATTCCGCCCGCAATGAGCAGCATCTGAGTTTCAAAGTGCATCGCTCAGATTGGAACCCGGTAGACTGTGAAGGATTGACTCTTATGGAGAGGCCTACGGATGGCGGAGATGGCAGATCTGCGGGTGGTGGAAACCGATACCGCCGGACTGGTTGGAGCAATGCCAGCAAGTACAGACGTGCGGCGAGGTTCCGGCGCTCGCAATCCGGCTGAGCCCAAGCGGGTCTGCACTTTTCAGATGGGTTTTGCCGATGAGTGCCGAGTACTGATTATTAAGCCAGTGCATTGATAAGGAGTTTGGTGTATATGGTCTGAATTGTAATGGCTGAGACGGGGAATAGAGGGGGGGGCTGGAAATGCAAACTCATTAAAAATCAGAAATCTTGGTTATTGTATTGTTGGGATTGCAAGGATTTCTAAGT # Right flank : TAAAGGACATCTAATGGATGCCTTCAGGTTCACCATTATGAGAGGAGACGACCAGAAAATGCATAAGGCTTTAATAAGCGAAATGGCATCCAGGGATTGTGCCTGCACCCGTCATGACAGCATTCCTGAGGATCTGATTGACGGCTATCCGCCGAGACACGCATAATCGAGAAAATGGGTGAAACTAAGCTCCTGGTCTGGAATTCGCTGGATGATGCGGACAAGAGAATGATCCAATCGGATTGCGTATACTACGGTACAGGCTGCGGCGGCGAAACAGAGGTGGGTTTCTACGACGTTATCGGCATAATGCGATTCGACTGGTTCATTCACGTGCTCCCACATGCTGTTTCAATCAGCAAAAGAATCGCTATAGGAGCGTCGGCGGAGAATCCATAACAACATTGTGGTTTGAACATGAGTATGATTTAAACTTGAGCGTTTGATTCTCTGAGGATGATCCGGCCGTCTATTCGATCAAGAACGAGAATACCGTGTGC # Questionable array : NO Score: 5.65 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.50, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCATCCGCGGGGATGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCATGCGCGGGGATGATCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //