Array 1 1056-1814 **** Predicted by CRISPRDetect 2.4 *** >NZ_AZEM01000031.1 Lactobacillus kefiranofaciens subsp. kefirgranum DSM 10550 = JCM 8572 strain DSM 10550 NODE_46, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 1056 28 100.0 33 ............................ TACCACATATATCTAAAAAGTAAATAGAAAATG 1117 28 100.0 33 ............................ CAACATCCTTACGTGCTGCCCAAGTTTCCAGCC 1178 28 100.0 33 ............................ CTAAGTAATCACCACTCCTTGAGTTCACATGAG 1239 28 100.0 33 ............................ TATGGCTAAGGCAATTGAGCTTACTGGCCGTAA 1300 28 100.0 33 ............................ CGTGACAGAAAAATTATTTCATGGGGACTGCCT 1361 28 100.0 33 ............................ CGGTGATGGCGGCCCAGCAGCTGGACTTCTCAA 1422 28 100.0 34 ............................ CGTAATGACTTCCACCGTTTAAATCATGGTAGGA 1484 28 100.0 33 ............................ TAATCAGTGCATTCCGATTTTTCATAAATCAAG 1545 28 100.0 32 ............................ AGTCTGAGCAATTAAGCCCTTAGTCTGCATCT 1605 28 100.0 33 ............................ TGGAGGCTCAAAAATGATTAATCGAGTAGTTTT 1666 28 100.0 32 ............................ AGTCTGAGCAATTAAGCCCTTAGTCTGCATCT 1726 28 100.0 33 ............................ TAACATCATTGTGTGGATGTATGATAAGAACGG 1787 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 13 28 100.0 33 GTGTTCTCCACGTATGTGGAGGTGATCC # Left flank : CCTACAATCGTACAGATATTTCTGATAAAGAATTAAAAAAGCTAGAAAAATTTATCGAACTAAACTTTGATGTTTTTTGCTCTAAATGGAAAAGTTTCTTCAATTTATCAAAAATTGAATTTCATAGCTAAAGTATTAAAGGATGGTTAGATAGTCACTAAATTTTTGAGCTTGCCTATTGATAGTTCTAAGATCAATAGGCTTTTTTCTTGCATTTTTATTCGTTATAAAGACGAGGTAAATTATTGGATTACCTTTCAAATGGTGAGGATCTTTGATTAGATAAAATTGCTTCGCAGGATAAAAAATTAAAAGGATTGAAGGATATTCAATTAGGAATGTATTTTCCTGATGGGTATCCTTTTTTGGATGTTAAGTACATGATGGTAGCATGATATAATTAAAGGGGAAAATGCTAGGATTCATTTTATTCTGACTAAACTGAATAAAAATGAGCTTCTAAGAATTTAGAAATGTTGATGGATCAAGGATCTTTTAGT # Right flank : CTATCAGTCTTCCAATATTTGTAAGATGGAATCTTATCTTCTTTAATTTGTCCACCGAACATCATAGCCATTCCTAAATTAAATTTTTTAGCACCGGTTGCCCAAGCAAGTTTAAGTCCTGAGCCACCGCTTTTACCAGAGTTCATTGGTACAATTCGATTAGAATTAGAGTTGAAATATTTAGTTAGCATCTCACGGTTATTTAAATATCCACCAGTTGCCAGGATAACTGCTTTAGTTGCGATATTCTTCGCCTTTTTAGTTTCAAAATCTTGAATAGTTATACCGGTGATCTTGTCAGAGCTATCTTGATTAAGTTTAGTTACCGTAGCTGAAGTTATATATTCAACATTGTGTTTTTTAGCGTAAGGCTCAGGTGCATCGTGAATTGCATGACGACCTAAACCATCAAACATATGCCAGGTATTAAGTCCTGAACCTAAGGTAGCGACACCCTTGAATTTGACACCTAGATTTTTAAGCCAGGACACATTTTCGGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCTCCACGTATGTGGAGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.40,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [71.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA // Array 1 122778-122383 **** Predicted by CRISPRDetect 2.4 *** >NZ_AZEM01000115.1 Lactobacillus kefiranofaciens subsp. kefirgranum DSM 10550 = JCM 8572 strain DSM 10550 NODE_317, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =================================== ================== 122777 28 92.9 33 ..A...........G............. CATCAACCGTGTTATCGACGGTGAATAAGAATT 122716 28 92.9 33 ..A...........G............. TAAAATTTATGATCTGTACTATCAAGCTGGTAT 122655 28 92.9 35 ..A...........G............. CTAATGATTTATAGGAAGCCACACTTTAAATTGTT 122592 28 100.0 33 ............................ TTCTACACCAACTTTAATAAATACGATGCTATG 122531 28 100.0 33 ............................ TTGAAGTTGATTAGACACAGTACAGTCATTTAG 122470 28 100.0 33 ............................ TCAATGAAGTTACGCGCTATACTGATTTTATTC 122409 27 89.3 0 .......................T-..T | ========== ====== ====== ====== ============================ =================================== ================== 7 28 95.4 34 GTGTTCTCCACGTATGTGGAGGTGATCC # Left flank : GCTTATAAGAAATATAGTCAATTATGGCATAGTATGTATCAAAGTAAAAAGGTAACTAAAGAAGCAATGGAAGCAGCACTTAATACTTTCATGCCGCTATATGAAAAGGCCCCACAAGAAATGCTAGTGGTTGATTCAATGGTTGATAGTTCCCTTGCTGCAATGCAATTTATGCTAGTTGCTCGTGAGCATGGCTATGAAACTAATGCAATGGCTGGATATGATGCTAAGAAGGCGGCAATTGTAATGGGGCTTGATCCTAAACAATATGTTCCAGTAATGGCAATTGCTATTGGTAAGCATGATCCAAAGGCTGAAGCAGAAATTACTACTACTAGATATTCTCTTGCTGATCTTGTTGATTATCAATAAAGTTTTGGAGTAGATTTTAAGTATTCTGTGTAGGGAATTGTAAATTAAGTTAATAATCTAGTTTAGAAAGTGAATAAAAATAAGAGTTTAGCTTTTCAGAAATGGCTTGATTACAAGGATTTTTTACT # Right flank : ATTCACATAAAAATATCCTCGACTGTAACACTGTAACTGTCGAGGATGTTCATTCTATCGGTCTTTGCTATCTATTAATTTGTAAAATGTCTTCCTTAGCATGAATCAGTTCAGTGACAAACTGGCAATATGGCGTAGCTACACTGTGTTTTAACCCTTTGCGCCAAACTGCACCATCAATATAATCGATTTCAGTTGGTCGATGGTTTTGAATTAAATCTTGATACATTGAAGGATAATGTGGAGTATCAAATAGGCTTTCTACATGTCTAATAACCTCGGCACGATCTAGATTGACGCCTTCATACTGAGCGATATCAGCGAATTCTTGTACAATATGTCTAGTTAAAGTATCCGCTTCATTGGTATGACCATATTCTTTGCAACTAGCTCCCAGCAATGCGCATAAGGCATTAACTACACCGTTAACGCAAGCTTTACGCCATATAGAATACATTACGTTTTCGCTATAACTTGCGTTTAAACCGGCATCATCTAAG # Questionable array : NO Score: 5.88 # Score Detail : 1:0, 2:3, 3:0, 4:0.77, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCTCCACGTATGTGGAGGTGATCC # Alternate repeat : GTATTCTCCACGTAGGTGGAGGTGATCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.70,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA // Array 1 8774-9110 **** Predicted by CRISPRDetect 2.4 *** >NZ_AZEM01000104.1 Lactobacillus kefiranofaciens subsp. kefirgranum DSM 10550 = JCM 8572 strain DSM 10550 NODE_255, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 8774 29 100.0 33 ............................. AAGTCTTCGGACACGTGCCAGTCGCCGGCAATT 8836 29 100.0 34 ............................. ACCTTTATAGCAACGTAATACTGACAACAGGTGA 8899 29 96.6 32 ............................C GATCGTAAGATTCATCTGTACGAATTCCAATC 8960 29 100.0 32 ............................. GCTGGCCGTCAAACATTCCTACAAATAGGCAA 9021 29 100.0 32 ............................. GCTGGCCGTCAAACATTCCTACAAATAGGCAA 9082 29 93.1 0 ...........................TA | ========== ====== ====== ====== ============================= ================================== ================== 6 29 98.3 33 GTATTCTCCACGTATGTGGAGGTGATCCT # Left flank : TTGCTAGTTAAGTAGTGATATCCCTTTTTAGCATGATGATCAACTTTAGTTAAAGCAGCATCCTTATAGATAGTAGCATTGTGCTTTAAGCGAATGATCTTAGGATTAGATGAGAGATAATCGCTCTTATTGAAAGCTGGAGCTTTCTTTTCTGTAGTAGAACTTTGAGATTGATTAGAGTTCTGTACTACTTGAGTATTTGATTGAGCAACGCTAACAGCATCGGCTTGAACGTGATTAGTAGAACAATTCCTGCACCAAGCAAAACTGCCACGATAGCTGTGTTCCACTTTGTCTTTTTCAACATATATTTTCTCCTCCATAATTTTTGGGAATTCATTGGTTATTTTACTCGTGTTTTAGAAGTTTTTAAATTAGGAAGGAAGAATTTAAAATGAGTAGAAGATATAAATAAAAAAGAATAAAATAAATAGGATGAAACTGAATAAATTTTAGTTTTCATAAAATTGAAATGGCTCAATGATAAGGGATCTTTTAGT # Right flank : AAAAGCTTTCAAGTGCTATAAATAGTTCATATATGAAATAATATTTTACAAATTATGAGGAAATGAAAATGCAATTATCTAATAAGACTTTATCCTTATGGGGTAAGAAAAATGTTAATGATGACAATGAAAAAATGTGGTTACCATTAATTGCGCATTTAATTGATACAAAAAATGTGATCAATTGGCTATATAATCATTGGATCAATGATGGTCAAAGACATATTTTGCAACGGAATTTTGAAGATGAAGATATAGTTCAAAATTTAGTGAAGTTTTTGGGATATATACATGATATTGGAAAGGCAACACCTGCTTTTCAAATTAAACAGTCATATATCCATAATGAAGATTTAGATCAGAATTTAGTAGAAAAATTATTGCGAAATGGCTTTGATGGTCTAGATAATTCAAAAATTAAGAAAATTAATACAAGTAAGACGCCTCATGCATTAGCTGGAGAAGTTATTCTAGAAAACAACGGGTTAAATGAAAGTATA # Questionable array : NO Score: 5.97 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTATGTGGAGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: F [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.40,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 18902-20945 **** Predicted by CRISPRDetect 2.4 *** >NZ_AZEM01000104.1 Lactobacillus kefiranofaciens subsp. kefirgranum DSM 10550 = JCM 8572 strain DSM 10550 NODE_255, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 18902 29 100.0 32 ............................. ATTTCACGAAAATCAGTGTTCTGCGCTTCAAG 18963 29 100.0 32 ............................. GCAACTCAGAAACGTTTAAAGTATGTCTTTGA 19024 29 96.6 32 ............................C ATTTCTTCTTTTGCATTCCAATAAGCTTCTGG 19085 29 100.0 32 ............................. GCAAAACCACGTGATAAGCGTCCTAAGAAATT 19146 29 100.0 33 ............................. GATAGCTGGACCGTTAGCCTTGTCTTCAACTAG 19208 29 100.0 32 ............................. AACATAGGCTTGCCCTTAGCCGTTGTTAAAAC 19269 29 100.0 32 ............................. GATCGAGTTTGATGACAAGGATTTACAGGATT 19330 29 100.0 32 ............................. TAAGCTACGCATTGATTTTGGCTTAAAGCAAG 19391 29 96.6 32 ............................C TTAGGATCATCAATATTCCCAATTTGAGCTTT 19452 29 100.0 32 ............................. GATCGAGGACTTTGATTACTCGGAACAACAGA 19513 29 96.6 32 ............................C TTACTGCGATGTCACTATTTCAGACATTTAGC 19574 29 100.0 32 ............................. TTTCCCTTCTTGATTCGTCCTCATTCGGTTAA 19635 29 100.0 32 ............................. AGAGTGCCATCGGTGTTTGAACTTGCTACCAA 19696 29 100.0 32 ............................. ATGAGTGTTGCATCTTTTGAGTCATCGCAAGA 19757 29 100.0 32 ............................. GCCAGTTTTGATTCAATGACTGATGAACAAAA 19818 29 100.0 32 ............................. GTCTTTTTCATCAACGTTTTGAGATAATCCAG 19879 29 100.0 32 ............................. ACTTATTTTCTAGAGAAGCACAATTTCTTTAA 19940 29 100.0 32 ............................. TAATAAAGATACCTGCTACTTTGTAGACGTGG 20001 29 100.0 32 ............................. AGCAATGATTACGTAGGAATTGAAATAGTTCC 20062 29 96.6 32 ..........A.................. ATAAATCCACACCATTGTCATTTTGCCAACGA 20123 29 100.0 32 ............................. CATGCGCCTGCGGATGAAATCCTTGATGTCTG 20184 29 96.6 32 ............................C CAATAATAGCTTGCACCACCCTTTCTAAGTCG 20245 29 100.0 32 ............................. CAATAGAATCAGTAGCCTTAACAGCTTCAAGC 20306 29 100.0 32 ............................. TTCAGCGGCCGTTTCGTTAATTCTGACCCGCT 20367 29 100.0 32 ............................. CATATCAGCCTCTTCCTCTGATAATTCAAGTT 20428 29 100.0 33 ............................. AACTTGGCGGTGCTTGGTGGTGAAAAGCAGAAA 20490 29 100.0 32 ............................. GCAGTTCATGAAGCAGAGTATATTGGTGGAAG 20551 29 100.0 32 ............................. ATGATTTCGGCATGATTACCAAAGACACCCTG 20612 29 96.6 32 ............................C TTAACCAACAAAAAAATTGTTTTTTCCGAAGT 20673 29 96.6 32 A............................ GCAGTTCATGAAGCAGAGTATATTGGTGGAAG 20734 29 96.6 32 ............................C ACATAACTGCTTGCTAAACCTAGACCTAATAA 20795 29 96.6 32 ............................C TTCACAGGGGTAGTGAAGTAGATTTCACTACC 20856 29 100.0 32 ............................. AATACCATCGTCAATTGCATTATAAATGGCAG 20917 29 96.6 0 ..........T.................. | ========== ====== ====== ====== ============================= ================================= ================== 34 29 99.0 32 GTATTCTCCACGTATGTGGAGGTGATCCT # Left flank : ATATATATCTAAAAGTAAATGTGAAAGATTTTATCGACTAATTAAAACTGATTATGAAATTCCAACGCATATTTCTAAAATTACGCAATTAACATCAGAGAAATTGAATCAAAGTGGTGTTGAATTATTTGATGCGCTTGAAGACTTAAAGAAGTTTTTAGCTGATAGATTAATAGTAGGTTATAATTTAAATTTTGATATTAATTTCCTGAATCGTGACTATCAAAAATATAATAATTCCCATATCTTGAATAATTTAAAGGATATATTGCCAATAATTAAGAATAAAAATAAGTTTATTGATAATTATAAATTAAATACAGTTCTTAAAAATTATGGTATAAAAAATGCTGAACCTCATAATGCTTTGTCAGATGCGTGTGCCACATTGGATTTAATTATTAAGCTGGTAGAGCAAGGCAGCTTTTAAAGATAATGAAAGTGATTAAAAATAGAGATTTAGTATTTTGAAAACGGCGATAGAATGGGATTTATTTACT # Right flank : TAAGTACTATGTTTTGGAATTTGCTTTCGAACCAGTAAGAAACAATGAATGAATATAATTTCTTGAAATCAATTAGTGATGGGAAACGTCACAAACCAAAAAATCCTGATCTTTATGATCAGGATATTGATTAGCCTTATGTCCATAGTTATCAGTGACATTAAACCTAAGATAATAAATATTACTATTTTGGAGGTCGTAACTATATGAAAGTTACTAAATTAGTTGTTGGTATTTTACAAATTTTAATTGCTGTGGTTATCTTAGTTCAGTCCTGTTCTGTAGGAGCTAGTCACGCAATGGAAGATAAAACTAGTGATTTTGGTGGAACCTTTGGTATTATTGCTGCAATTCTTTTCCTAGCAACTGGTATTGTTTACATCGCTACTAGAAAAAGCAAAAAACTTGGTGGCGATATTGCTGGATTAATTATGATGTTAATTACTTGGATTTTTGCAATTACTAATGCACACGACTACAGTGACTTGCAAATCTGGGGT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTATGTGGAGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.40,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 21571-21904 **** Predicted by CRISPRDetect 2.4 *** >NZ_AZEM01000104.1 Lactobacillus kefiranofaciens subsp. kefirgranum DSM 10550 = JCM 8572 strain DSM 10550 NODE_255, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 21571 29 100.0 32 ............................. AATCGCTGGTAGCAGGCTTATAGTCCCACGGA 21632 29 96.6 32 ............................C CAATGGGACCGGAACACAGAATTCAAAGAGAC 21693 29 100.0 32 ............................. AAACCTCTGTTTTTTCTTGTGGTACAGAAAAG 21754 29 96.6 32 ............................C CGACTTACTAGCACCGATTCTTTTAGTCATTA 21815 29 100.0 33 ............................. TAGAGAATATCAAAAGAAGCATCCCAAAAAGCG 21877 28 79.3 0 .....................-CA.C.AA | ========== ====== ====== ====== ============================= ================================= ================== 6 29 95.4 33 GTATTCTCCACGTATGTGGAGGTGATCCT # Left flank : TTGATTAGCCTTATGTCCATAGTTATCAGTGACATTAAACCTAAGATAATAAATATTACTATTTTGGAGGTCGTAACTATATGAAAGTTACTAAATTAGTTGTTGGTATTTTACAAATTTTAATTGCTGTGGTTATCTTAGTTCAGTCCTGTTCTGTAGGAGCTAGTCACGCAATGGAAGATAAAACTAGTGATTTTGGTGGAACCTTTGGTATTATTGCTGCAATTCTTTTCCTAGCAACTGGTATTGTTTACATCGCTACTAGAAAAAGCAAAAAACTTGGTGGCGATATTGCTGGATTAATTATGATGTTAATTACTTGGATTTTTGCAATTACTAATGCACACGACTACAGTGACTTGCAAATCTGGGGTTGGTTAGCATTTATTATTGGTGTTGGTTTCTTTGTATGGCATTTAATTGCTAACAAAAAATCACAAGCAAAATAATATAATTTAACCACAAAAAAATCCCACCTACCGCTGGCACGGTAAGTGGGA # Right flank : AAAACAGGACTAACTCAACCAGATTAGCCCTGTTTTTCATCTATATTAAAATATTTCTTCGATGCATCGCTCATGCGATCAGGCGTCCAGACCGGATACCAAACAAATTCAACATCAACATTTTTTACTTCTGGCACTTTTTTAACTGCCTGAGTAATATTATCAATTAGGTAGCCAGTTAACGGACAAGTAGGGGTAGTCAAAGTCATATTGATTAAACAGATTCCATCTTTGTCCAGATCGATTTCATAAATTAAACCTAGATTGACTACATCAAAATTCAATTCAGGATCGATAACTGTCGCCAATTGATTGATAATATCGTTTTTAATTGTTTCACCGTCACGCATTTTGTCACGCATCCTTGCCAAAAATTTTAGCTTTGATTGCTTGGCCGGTTGGAGTACCAGCTAAGCCGCCGATTCCGGTCTCACGCAGGGATGCTGGCATTTGATGACCAACTTTTTTCATAGCATCGATACATTCGTCAGCTGGGATCA # Questionable array : NO Score: 6.03 # Score Detail : 1:0, 2:3, 3:0, 4:0.77, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTATGTGGAGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.40,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //