Array 1 645023-645290 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABKVG010000010.1 Vitreoscilla massiliensis isolate MGYG-HGUT-01520, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 645023 28 92.9 32 ...........G.....T.......... TGATGAGCTGTATCAAACGATAGAGCCTTTGA 645083 28 89.3 32 T.........AG................ GAATTGACCAAACAAATACAGGCCGCATTGCG 645143 28 100.0 32 ............................ AGTCAATTAACTCAATCAACGACAAGTCGCGC 645203 28 96.4 32 ...........G................ ATTCAATCATGCGCCCAACTTGAAGAAGCTGG 645263 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 5 28 95.7 32 GTGAACTGCCGCATAGGCAGCTTAGAAA # Left flank : CAATGATGAAGCCATCGGCTTTATCAGCCTGAACGAATGCTGCTCCACTTATGCCGGTGGCGCTTTTGGCGAAATTGCCGAATTTTATGTGCAACCACAACACCGTTCTCGCCAATACGGCGAAGAACTGATTACCCATGTCAAACACATCGGCAAAGCCAAACAATGGCGCGTGCTTGAAGTGGGCGCCCCAGCCTTCCCCCGCTGGAGCCGCACCATCGCGTTTTACAAAAACAACGGCTTCAAAGAAATCGGCCCAAGACTGAATGTGTCTTTGGTGGATGCATAAGCTGTTTGCTTGTAAGTTGGCTGGCTTGATTGCGGTGCAATGAGCTTCTTTGGGTAACAATGTTATTTAAAAATCAAAGTGGTCTATCTTTCACAGAGCGATGGTAATAATTTGATTTTATAAACAATATCAAACCCATCAAAACAATGACTTTTCAGAGTCAATCATTGTTTTGTCTTACTGAGTGAGGCTTAGCAGCATTTTTTATACG # Right flank : ATTGGTGTATACACAAATAGACGCGCCATTCTTATCCACTGCCGCACAGGCAGCACTCAAACACATATATGTATGCATACAACTTATAATCACTTACAGTTATAATCACTTACAGAACAACTCACTCATTAAAATAAGCGGCCTGTAAATGCATTCCACACATTTACAGGCCGCTTTTAGCTTGCTTAAAGCATGGCTAACTTACATACCCAATTCATTCAAGAAGCGGATGTCGTCGGCCCAGCCGGATTTGACTTTTACCCACACTTTTAAGAACACCTTGGTATCAAACAGTTTTTCCATGTCCATGCGCGCTTCGGTGGAGATTTTTTTCAAACGCTCGCCGCCTTTGCCGATGACGATGGCTTTTTGATTGTCGCGGTCGACCAATACGGCGATGTAAACGCTGTACATGCCGGTTTCGGCGTCTTCTTCAAATTGCTCTACTTCCACGTTCATCGCGTACGGCAGCTCTTCGCCCAAATAGCGGAACAGTTTTT # Questionable array : NO Score: 5.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.85%AT] # Reference repeat match prediction: F [matched GTGAACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.70,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.78 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 698474-702169 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABKVG010000010.1 Vitreoscilla massiliensis isolate MGYG-HGUT-01520, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =================================== ================== 698474 28 100.0 32 ............................ AGCACAATCACGCTACAACAACGCCCAAAGCC 698534 28 100.0 32 ............................ TGTGGCTGTTATCGGCGATAAGGCCATGCCTG 698594 28 100.0 32 ............................ TCAAAACGAGCCCCAATATCGGTTAAAGTGTT 698654 28 100.0 32 ............................ ATTTTGGATAGCAAGTACAAAGTCTTGATTTT 698714 28 100.0 32 ............................ ATACCATTGCCGCTAGAAAATGGTAAGCCTGT 698774 28 100.0 32 ............................ TGAGGATGCTCCTCCAGCCTTTGCAATAATTC 698834 28 100.0 32 ............................ GCTTCCATCGCTATGGCTCCGCGCCGGTACCG 698894 28 100.0 32 ............................ AGCTTGTGTTAAAAAATTGGCCGCAATGCTTG 698954 28 100.0 32 ............................ GTCATCAGGACTTGAAAGTGGGCGCGTAGGTG 699014 28 100.0 32 ............................ TTGCAAACCTGTATAGAAAGCCAACATGACCG 699074 28 100.0 32 ............................ TGTGCTGTAGTGCCCTCTTTGCCGCGCTCTAT 699134 28 100.0 32 ............................ TATTGGTGGTGGTATTTCTTTAGATGAGGTGC 699194 28 100.0 33 ............................ AAAACGGGTTTTGGTCAAAGAACGCATCATTCA 699255 28 100.0 32 ............................ TTGACGGGTTTTACTGTTCTAGTAAATCAATT 699315 28 100.0 32 ............................ ATTAAAAAACCCGCGAAAGCAGGTGTAAATTC 699375 28 100.0 32 ............................ AATGAAGCGTTCACCGTAGTCTTTAACCCAAG 699435 28 100.0 32 ............................ AACGGAGGTTTGATTGCATATCCAAGGTCTTG 699495 28 100.0 32 ............................ ATGCTCCAAAAATTAAGACCGCATTAAGCGGC 699555 28 100.0 32 ............................ TTGTGAATAAAAAGTCGCCAGTCGTGAGAGAT 699615 28 100.0 32 ............................ AATTTGGTAAGTGCTGGCATCGAACTTGCCCT 699675 28 100.0 32 ............................ TGTATTGATGTTGTCTGCTCGTCGCACCCAGT 699735 28 100.0 32 ............................ ATTGCCAAGCACATGACTGCCAAACAAGCCAA 699795 28 100.0 32 ............................ TGTATTTGCGCTTGCATCAATAATGCGATGTT 699855 28 100.0 32 ............................ GTTTCGGTTGACTTGTCTGCATACCTACAACG 699915 28 100.0 32 ............................ ATGTAGTTATCACAATACGTTACCAGTGTGTT 699975 28 100.0 32 ............................ TCAAGAAATAACGCAACCAGTAGCGCACAAGC 700035 28 100.0 32 ............................ ACTGTGATGGTGTTTGCAATTTTATGCTCCAA 700095 28 100.0 32 ............................ ACTAGACAGATTGCCGTCGTAACGGCTATTGG 700155 28 100.0 32 ............................ ACATCAACACCGCGGGATACCTGAACTTTCAT 700215 28 100.0 32 ............................ TAAGCACATGATTGCTGACAGAACCCCGGATC 700275 28 100.0 32 ............................ TCGATGGTGCAGCTAAAACAAGCCGAGAATTA 700335 28 100.0 32 ............................ TCAAGGTGTCACTGTGTAATTTGTCACAAAAT 700395 28 100.0 32 ............................ TCAAGGTGTCACTGTGTAATTTGTCACAAAAT 700455 28 100.0 33 ............................ CAACAGGGCAAGGCTGCGATTTATCAGGCCGCC 700516 28 100.0 32 ............................ GGCGGGCGCCTGTCCATCACGCTGCTGGAAAA 700576 28 100.0 32 ............................ TTTCATCCGCTCAACCATTGCGTTTCATGAAT 700636 28 100.0 32 ............................ ATTCAGTCGCATGGTGTCTTGCCAAGATGAAA 700696 28 100.0 32 ............................ ACGGTGGACGATGCCTGCGACGGCATTGCGGC 700756 28 100.0 32 ............................ AATTCGCTGCCAAGCTGTTGCAGCTTGCGACG 700816 28 100.0 32 ............................ ACGTTGTTTTAGCCTCAAAAATAGGCAAAGTA 700876 28 100.0 32 ............................ ACTGGAAAAGCCTGGCAAAGATGCTCCCACAG 700936 28 100.0 35 ............................ ATGGAGAGATTGGCCTGAAGAGCTACGAGTAAATT 700999 28 100.0 32 ............................ AACGGGTGAGTGGCTGCATTGGTACCACCTTC 701059 28 100.0 32 ............................ ATCATGCCCCCAATATCGCGGCCAACGCCGTA 701119 28 100.0 32 ............................ AACAATAGGTACAGCGTTCGCAGTCATCGCGT 701179 28 100.0 32 ............................ TGGAAAAAACTTGTCTCAATGTACCGTGACGC 701239 28 100.0 32 ............................ TAATGCCGCGCCGATAGACACAAAAAAATGTG 701299 28 96.4 32 .......A.................... GTTCAGGACGCGATGACTGCGAACGCTGTACC 701359 28 100.0 32 ............................ TTGGCCACGGTTGAAGCTGCTATCGCTGATGC 701419 28 100.0 32 ............................ TTGAAAGCATTGCTTTGCATCTTGGTGAAAGG 701479 28 100.0 32 ............................ CTGAGTATCACAAGCGACATATGGCTGTGATA 701539 28 100.0 33 ............................ CCGAACTGTCAGAACAAATAGGGTTGAAAAGGC 701600 28 100.0 32 ............................ GCCAGCCACACCACCGGCCAGCCACACCACCG 701660 28 100.0 32 ............................ AGCAGTGCAGATGCCATCCTCCAAGCTGCCCT 701720 28 100.0 32 ............................ TCAAGGTGTCACCTTGTGCACTTTCACAAAAT 701780 28 96.4 32 ..........A................. ACCAAAAGAACCTGAGCCAGAGAATCCGACCG 701840 28 100.0 32 ............................ ACGAGCGGCTTTAAATTTGTCTGCAAACCCGA 701900 28 100.0 33 ............................ CCAGCCAATGAAAGCCAACAAATGACAGGCTAT 701961 28 100.0 32 ............................ ATCGTCCAAAAAGTCGACTTTCCCAACGGATT 702021 28 100.0 32 ............................ ATGTACAAATTGAATAACGCCGCGTAACAAGC 702081 28 100.0 33 ............................ CAAGAAGCAAAAATCAATAAAATACCATCCTGC 702142 28 85.7 0 ..................C......GGC | ========== ====== ====== ====== ============================ =================================== ================== 62 28 99.7 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : CACAGAAACCCACCAGCACACCGGCACTGGCCAACATGCGCATCGCCGCTTGTGTAATAGATGTGCCCGTGCCCAACATGATGACGGTGGTATTAGCAATCGGAATATTCCAATAGAAATTTTGCTTTTTGGATTCTGTGAGGTACAAAACACGGCCGTCTTTTTGCATCACGCGACAATGCTCAAGGTAATAAATGTTCGCGCGTTTTGAGTGCAAAATGGCTTTTAAATCCGTCAATGCTTCCATGTCAGCTTCCAACATTAAAGTTCAATGTCATAATAGATGCGTTAATCAAGAAAAGATATGACGAAAATTAAACTTTCAGCGGCCTGTACGCAAATATTGCGTCATGCCAAACGAAGCGTTTTGACCTATATTTTTGTGTTAATTTTAATCCATTGATTTTTAATGATTTTATTCAAACCCTAAAAATAAAGGTTTTTCAGGTTTATCTGGCACAAATTGTTTGCTACCCTAGCTTGTGGCGAAAATCGCTACT # Right flank : CGTGTTCTCATTTGGCCTTACACCAAATAAAGATACAAGCCAGTCGTAGCATGGCCTTGTAATTGCGGGCTAATTTGTCAAAACGCGTTGCAATACCTCTGAAATGCTTCAAGCGGGCAAATGCATTTTCAACCACATAGCGTAAGCCGTATAAATAACGGCTAAATTCCGGATTACTTTTGGTGCTGTTGGATTTTCTAGGGATGACGGGAATCATTCCATGTTTTCTTGAAGATTCTCTTATCTTTTCAGAGTCATAGCCCTTATCAGCGACCAAATAATGGCCGGTTTGAACCAAGGCGATCAGCTGCGGTGCAACTTGACTGTCGTGGGTTTCGCCCCCAGTGATTTCAAAATCAAGCGGATGTCCGTTCGCGTCGACGGCCAAGTGTATTTTTGTAGTTGCGCCACCTCGTGAACGGCCAATTGCTCGAGCCTCACCACGCCTAGCTCCACTCGCATGCTGATGAGCGCGGACGTAGCTTCCGTCGATGAATACC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 703056-703804 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABKVG010000010.1 Vitreoscilla massiliensis isolate MGYG-HGUT-01520, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 703056 28 100.0 32 ............................ AAGTGCTGTAATCGCACACGGAATAGCCGCTG 703116 28 100.0 32 ............................ AATTGGGAATATAAGTACCAATATGATTACAA 703176 28 100.0 32 ............................ TTAAGCGTTGCTAAACGCGTTGCTGAAGTTCA 703236 28 100.0 32 ............................ TACTTGGGCTGAAATCCACGACACAAACTTGT 703296 28 100.0 32 ............................ TGTCTGCCGAGGAGCGCCGGCCGCTGTGTGAT 703356 28 100.0 32 ............................ AGTTGCTGCATATTGCGCAATTCTGAGCCATT 703416 28 100.0 32 ............................ AAGCAGGTGGCTGAAGTGCAGATATTGTCTAG 703476 28 100.0 32 ............................ ACTCGGCCACCGTTAAAGGTTGGGTAGGGTCT 703536 28 100.0 32 ............................ GTGTTGGTGCTTCGCCTTGGTACAACTTGCTG 703596 28 100.0 32 ............................ TATTTGAAAGGCTTGGCAGTAACCGACAGTCC 703656 28 100.0 32 ............................ AATGTCGCACTGTACGTAGTAATTTTGTATGT 703716 28 100.0 32 ............................ TCATCCGCTCTGACCACGTCGCCGACCACGCC 703776 28 75.0 0 ........T.AG....T..AT.....C. | A [703798] ========== ====== ====== ====== ============================ ================================ ================== 13 28 98.1 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : AGTGTATTTTTGTAGTTGCGCCACCTCGTGAACGGCCAATTGCTCGAGCCTCACCACGCCTAGCTCCACTCGCATGCTGATGAGCGCGGACGTAGCTTCCGTCGATGAATACCCGTTCTGTATCCAATACGCCTCGTAGTTTAAAAAAAACTTGTCCCATAAACCCTTGATGGCCCAGCGATTAAAGCGATTGTAAGCCGTTTGCCAAGGACACAAATCTTCAGGAATATCTCGCCATGTCGCTCCAGTGCGAAGTTTCCACAAAATGGCCTCCATGATATTTTTGCTATTTTTGGAACGGTAGCAGCCATAAAACTTCATGGTATCTTGAATTTGCAGCCAAATATCATCGGTTAAAACTCGGCGGGCCATGTTAAAACTTTTATCAAATAAACATATATTTCATTCTATAACATAAGTTTTAGGAGTGGCTTATTTCAGATTTGAAATGAGAACACGCCCTAGAAATAAATGGACGGGTTTCTGTTGAAATCTTTACA # Right flank : ACAAGGCAGCAAAACCAAACCATTTCCTCTTTACAGGCCGCTTTTCTGCCCTTCACACGCTTGTGCTACAATAACGGCCTTTCTCTGTAGCCGTTGGAACCGTCATGAATTCAGTGCAGCAAATCGAAGCCTTATTACCGCAGACCCAGTGTGGACAATGTGGTTTTGCTGGCTGTGCTCCGTATGCAGTGGCGCTGGACCAAGGCGTATCGGCCATCAATTTGTGCCCACCCGGTGGGCGCAGTACGATTGCGGCCTTAGCCGAGTTGTTGCAAGTTCCGGTATTGGAGCCGGCTGATCTAGCCAAAACCGATGCGCCTAAAGTATTGGCGGTGATTGATGAAGATGTGTGCATAGGTTGTACTGCGTGCATCAAAGCCTGCCCGGTTGATGCCATCGTCGGTGCCACCAAACGCATGCACGATGTGTTGGCTTTGGAATGTACGGGTTGTGGTTTATGCGTACCACCTTGTCCTGTCGATTGCATTGATTTGGTAGCG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //