Array 1 370697-369723 **** Predicted by CRISPRDetect 2.4 *** >NZ_SATA01000001.1 Salinivibrio sp. VGrn1 NODE_1_length_681639_cov_123.178597, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ======================================================================================================================================== ================== 370696 28 100.0 32 ............................ TTGTTGCTTTAAAGTCCTTAACTAATCGCTTA 370636 28 100.0 32 ............................ AACATCCAGGGCAAAACCCTCGACCAGTTTTT 370576 28 100.0 32 ............................ ATCAATATTGCAGGCAGGCCAACCGACTTACG 370516 28 100.0 32 ............................ TCCATTAGCTAGAGGCATAATAGTCTGGTGCT 370456 28 100.0 32 ............................ TGACACATCGTCAACAGGGTCGCCATTGGCGT 370396 28 100.0 32 ............................ AACTACGGGGGGCACATTCCTTTGTTGTTCTT 370336 28 100.0 32 ............................ ATAAGGGTGTCGGCACTCCATACTTGTTTTTT 370276 28 100.0 32 ............................ TCGCCTAGAGCAAGCAGTGGATAGTCTAGCGT 370216 28 100.0 32 ............................ TACAAGACCTTGCTGATATTGTTGACGGCGGT 370156 28 100.0 32 ............................ ACGACTGTATGTTCTGATCGATATCGGCAAGA 370096 28 96.4 32 .............T.............. GCTTAGATGCAGACGATATGGCGAAAGGGGCT 370036 28 92.9 33 .............T....C......... ATCTAATCGCCCCCTCAAGAAACCAAGTCTTTG 369975 28 78.6 136 ...G.........T.......G...GTG ACACAAGCCCCAGCACGGTGTTGGATATGTGGAAATTGCCAACGGGCGCCTGTCACGATCGAGGTTAATCGTTAGCCTCAATGTCGGAGGCGCGCGGCGCAAATCACACCAAGCTTGTACGATCGAGTTGGCGCTT 369811 28 85.7 32 ..C...CTA................... AAGCTGGATATGGGTGATATTGACGGTCTTAC G [369807] 369750 27 85.7 0 .....................G-...TG | C [369725] ========== ====== ====== ====== ============================ ======================================================================================================================================== ================== 15 28 96.0 40 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GTGAAAGACTATGCCTACTTTAAACGCTGGAACTACAAATCGCCGCAGCGACTGTATAAAAAACTCGATCGGCGAGCGGCCGCGATTGCCAGCAAAAATGGTTACGATGAGGAGGAAGTAAAGCGTCGTTTGTTGGAAAACATTAAAACGGACGACAAACGCTGGTCCCTGCCTTTTATTCAAGTGACCAGCCTGTCGAGCCAAAAACGAGCAGGGCAGCCAAATACCGAGTTCGCCCTGTATATCGAGCGGGAACTCACCAAACAGCCGCCCAATAATGGCCAACCATTCACCTGTTATGGGTTAAGCAGACGAGAGCCCGACCAGCAAAGTGCGGTGCCGTGTTTTTGAGGGGGCAACCCCTCTTTACCCCTTCTTTTTGGCTCTTTAAAAATAAACCGAAAATACAGTCAGTTACAGCAGGTGCTTTTTAACAAGGGTAAAAGTCCATTTTTATCCTAACGGCCTGTTGTCACTGACGATTGTTACGTTATTCTATA # Right flank : ACACAAGCCCCAGCACTATGTTGGATAGGGGACATTGCCAACGGGCGCCTGTCACGATTGAGGTTAATCGTTGGCGCCGATGTCGGAGGCGCGCAGTCCACTTGGGTAATAGATGGCTGACATTGCACTGGCGCTTGTCCGATCTACGCACAGGCAGCGACGATGACACAAGCCCCAGCACGGTGTTGGATAGGTGCACATTGCTAACGGGCGCCTGTCACGATCGAGGTGAATCGTTGGCGCCGATGTCGGAGGCGCGCAGGCCGCTTGGGTAATAGATGGCTGACATTGCACTGGCGCTTGTCCGACCTACGCACAGGCAGCTTAGAAAAATTCGGCTGGCCGTCGATGTTAGCCATGATGGTTCACTGCCGCATAGGCAGCGTGGGTGACACAAGCCCCAGCACGGTGTTGGATATGTGGAAATTGCCAACGGGCGCCTGTCACGATCGAGGTTAATCGTTAGCCTCAATGTCGGAGGCGCGCGGCGCAAATCACAC # Questionable array : NO Score: 5.38 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:-0.67, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [19-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 382342-381474 **** Predicted by CRISPRDetect 2.4 *** >NZ_SATA01000001.1 Salinivibrio sp. VGrn1 NODE_1_length_681639_cov_123.178597, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 382341 28 100.0 32 ............................ TCCCAGCCGTGGCCGTGAAAAGCCTGCCGTCA 382281 28 100.0 32 ............................ TCAGTCGCAGAAACTAAACACAGTTTTGAAGC 382221 28 100.0 32 ............................ GGAACACTAAACACCGAAAAACACGCAAAAAA 382161 28 100.0 32 ............................ TCTAGTGTCAGCAAGTGCGCGATCAAGTTAAG 382101 28 100.0 32 ............................ TATGAAGAAGTGCGGCAGAAAGCGGAACAGGC 382041 28 100.0 32 ............................ TGCGCGTCACGCCTTACGTGTTCAACAAAGAC 381981 28 100.0 32 ............................ GCAAACTGTTTGCACTGATGCAGGACTATGCA 381921 28 100.0 32 ............................ TAGCGGTTTCACTCCTTTGGCCACTTGCTTGT 381861 28 100.0 32 ............................ CGCTCAAATCACACAGGCACTCAGACATTGAG 381801 28 100.0 32 ............................ AGCAACGTAAAAAAATCCTGAAGGTTGTGCTT 381741 28 100.0 32 ............................ CAGTGAAAATCACCATCGGCATCATGCTGAAC 381681 28 100.0 32 ............................ AACGGTATCAGCTTTGCTCCGCTCGACGTCAT 381621 28 100.0 32 ............................ GTTAGCGCGAATGACATAGAAGAACACATCAC 381561 28 100.0 32 ............................ TTCAGTCGCAGCGTAGTACCGTGTGATGTTCG 381501 28 82.1 0 .............C.......G...GTG | ========== ====== ====== ====== ============================ ================================ ================== 15 28 98.8 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : TGGACGATCTGTTACCCCTACCGCATGTTGCCGCGTTTAGCACCGCTTTATGATGTGGTCTTTACGCAGCCTTATATTGAATATGACAACATTGCGTTGAAAATGGCGAAAAGCAAGCGTTGGTATGATATTGGTTTGAGCCATTTCGAACGCTGGTCGCAAGATGTGGGTGTGCCGTGGCAAATGATCAAACCGCACCTATTGGATACGATCAACCTGGCGCGAAATATGTGGCCAAATCAACTTAAGCAATTACCGATGTTAACGGAGCACAAAGCGATGCTGCGTGATCATTGGAAAGCCCTGCACGAGAACTTCACCATTGATTCATGATCCAGCCAAACCGGGCGCTAAATCGGCGCCTTCTTACCCTTATTTTTTGACTATTTAAAAATAAACAATAAATACAGATAGTTACGGAATCCCCTTTTAAACAAGGGTAAAAGGCCATTTTTATCCTAACAGCCTGTTGTCACTGACGACTATTAAGTTATTCTATT # Right flank : ACACAAGCCCCAACACTATGTTGGATAGGGGACATTGCCAACGGGCGCCTTTCACGATCGAGGTTAATCGTTGGCCTTAATGTCGGAGGCGCGCAGTCCGCTTGGGTAATACATGACAGACATCGCACTGGCGCTTGTCCGACCTACACACCATTTTAATATCGGCGGTGCCATTGGCGTACATTGGTTATCGGAATAGCCACTTTTGGCCCGATAATACCATTGGCGTAGGTGACACAAGCCCCAGCACGGTGTTGGATAGATGCACATTGCCGACGGGCGCCTGTCACGATCGAGGTTAATCGTTGGCCTCAATGTCGGAGGCGCCAGTTGCACTGCGCGCGGTGCAAATCACACCTAGCTTGTACGATCGAGTTAGCGCTTCTCCGACCTACGCACAGGCAGCTTAGAAAGGATTGAATGAGAAGTCTTATGTGTGCTGCTGTAAATCCAACGTTGTTCGGCTGAATCAATATGAGTCAAAAAGTTGGGAGTCACTT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 386073-384265 **** Predicted by CRISPRDetect 2.4 *** >NZ_SATA01000001.1 Salinivibrio sp. VGrn1 NODE_1_length_681639_cov_123.178597, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================================================================================================================================== ================== 386072 28 100.0 32 ............................ AATACGCCAGAGGCCAGCGCCGCCGCCGTCAA 386012 28 100.0 32 ............................ TCAAGCGAGTTGATAAAAATCCTATACTACCT 385952 28 100.0 32 ............................ GCTGCCACCTGTGGCGATTGACGAGATGGCCA 385892 28 100.0 32 ............................ GCGAGGGTGAGCCATTTAAGGAAACCTATCAG 385832 28 100.0 32 ............................ GCTAACGGTAACGCAATCGAGGTCGCCAACTT 385772 28 100.0 32 ............................ CAACCGTGTTCGTTACGTGCTTTTTGTTTATC 385712 28 100.0 32 ............................ GGATTTGCGGATAAGATGACGCAATTCTCGGA 385652 28 100.0 32 ............................ ATATCGCTATGGAAAGACCGCTCAAGGATGTA 385592 28 100.0 32 ............................ AAAGCGCAAGCGAAACGCTTGCAGGAAGTCGC 385532 28 96.4 32 ....T....................... TAGATAAGAGATAAAGGTCCGTGCGTACGATG 385472 28 85.7 146 .....................G...GTG ACACAAGCCCCAACACTATGTTGGATAGGGGACATTGCCAACGGGCGCCTGTCACGATCGAGGTTAATCGTTGGCGCCGATGTCGGAGGCGCGCAGTCCGCTTGGATAATAGATGGCTGACATTGCACTGGCGCTTGTCCGACCTT 385298 27 89.3 32 ....T..A.-.................. AATTCGGCTGGCCGTCGATGTTAGCCATGATG A [385297] 385238 28 100.0 32 ............................ AGAAGATAACCGCACACCAGAGCCAGCACAAA 385178 28 92.9 32 ...........T.T.............. TGCCAGCGTTTTTTGTGTGCGCTTGTATTCCG 385118 28 92.9 32 ...........T.T.............. TTGCGAGGGGCCAGCACTTCGTCACGGATTTG 385058 28 92.9 32 ...........T.T.............. GCTCGGGCGGGTTTTTTATTGCTTGCGGTGTT 384998 28 92.9 32 ...........T.T.............. ATCAAAAAATCAAGCAGATTCAAGACGCCGGT 384938 28 96.4 32 .............T.............. CGCAACTAGCCGAGGGCGAAACGCCAGCGGCT 384878 28 92.9 32 ....T........T.............. TGAGTCAAATTGCTTCATTCCTCGGATTGTTT 384818 28 96.4 32 ...........T................ GTCAGCAACACGCCTCACCGCGTTTTAGTTGT 384758 28 100.0 32 ............................ GACGCACGGGCGCATGAAATACCAATCTATTC 384698 28 100.0 32 ............................ AATCCAAATCATCGGGGTCTAGGTCGAACAGG 384638 28 100.0 32 ............................ TTTTCCACATAGTAGAAATCAAATCTCAAGCC 384578 28 100.0 32 ............................ TAAAGCCAACGGTTAAAACCGACCTGAATGCT 384518 28 100.0 33 ............................ AGTTGAAACCGCGGTATCGAGCGCGATCACGCC 384457 28 82.1 136 .............T.......G...GTG ACACAAGCCCCAGCACTATGTTGGATAGGGGACATTGCCAACGGGCGCCTGTCACGATCGAGATTAATCGTTGGCGCCGATGTCGGAGGCGCGCAGGCCGCTTGGGTAATAGATGGCTGACATTGCAATGGCGCTT 384293 28 67.9 0 ..C...CTA.......A....G...GTG | G [384289] ========== ====== ====== ====== ============================ ================================================================================================================================================== ================== 27 28 95.5 40 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : CTTATCGTCAACATGGTCACTTTTTGGCGGCTTTAAGCTTGTATTGTGTCTTACAATGGCTACGCATCACGCTCTTTGAACGCAGGGCCGTGTGCTTGGTTTTGCGACCACGTGTACGCGCACGCCATACTTTGAAACTACGCGGTTTTAATTCACGTCGCATTAAAGCAATCACATCATCTTGGCGTAGCCCATAGAGTGCTTCAATCGCCTCAAACGGGGTCCTATCTTCCCACGCCATTTCAATGATCCGGTCTACGTCACCAGGCTCAGTCAGTCGCATAGTCTCCTCCTCGCATTGGACTAATAATTACGTATACGTTGAGCAACGCGGATCATTGAAGTTGGATACATAAAACCCCTTTGTAACCCTTCTTTTGGGGAGGTTTAAAAATAATCATTAAATACAAAGAGTTGTGGAAGGCCATTTTAAACAAGGGTAAAAGAGCATTTTTATCCTAACAGCCTGTTGTTCCGAGCTATTATTACGTTATTCTATT # Right flank : ACACAAGCCCCAGCACTATGTTGGATAGGTGACATTGCTAACGGGCGCCTGGCTCGATTGGCGCTTATATCAAACGATGTAAATGCACCATGCTAGTCTTGATGTTGTGACTTATTAAACAATGAATATGTTGTAATTCCTTAAATGACAACTAATATGTTGTATATAGGCTGTAGTACAACATTAAAGTTGTTTGAGGGTGTGATGGTGTCACTAAAAGATATCGCGCGTGCATTGCAAGCGCGTCGCAAGTCACTTGGACTAGAGCAGTCTGACATGTACATGCGTATTGGCATGAAACAACAGCAGTACCAGCGAGTAGAGGCGGGGAGTGATGTCCGGCTATCGACTTTGCTGCGTGTGCTCGAAGGGCTCGACCTGACATTAACGCTTACGCCCAAAACGTCTCAGACTGTCGATGAGCCGGTAAACTTCGATCGTTATAAAGATGATGATAACGACGATCTCGACTTTTGGTTAGGGACGGAGCGCAGCGATGA # Questionable array : NO Score: 5.64 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:-0.40, 8:1, 9:0.96, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //