Array 1 151069-150861 **** Predicted by CRISPRDetect 2.4 *** >NZ_STFG01000001.1 Lampropedia puyangensis strain 2-bin Scaffold1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 151068 28 100.0 32 ............................ AGCTTGTTGCTGGGGGCGATGACTGGCAGACG 151008 28 100.0 32 ............................ AGCGAGGATCTTTTGCCGGCCAGCACGGATTG 150948 28 100.0 32 ............................ GTGTGCTGTGGGGTGTTGCAGCGCTCGATGAT 150888 28 82.1 0 ...................T..TT.C.C | ========== ====== ====== ====== ============================ ================================ ================== 4 28 95.5 32 GTGCTCTGCCGCATAGGCAGCTCAGAAA # Left flank : AACACAACCAAAGCAACGCCAGCGCTTGGCAGCACAGCCAGCTTGTGTTTGACAACACCCCTTTACAGCAAGCCATTGCCGAGATCCAGCGCTACCATGCTAGCCCCATTCGCCTACTCAACGCACCGCTGACTGGGCAAGCCTCAAGCCTGCGGGTATCAGGCGTCTTCAATAGCAGCAATACAGACGAACTGCTCACTCAACTTGGGCAAATTCTTCCCCTACAAGTGCTGCGTCAACCAGATGGCAGCGTAGACATTCACACCGCCCCCACACAACACCCTAGACCGTAACCACACGCAAGCCACTTCTGCGCCATGCGGGGAAACACATCTCCCTCCCCCACAACCATGCACGCTGGCCGCTTGCGCCCCTTTTTTTGCGAATCCAAAAAAGAAATTGAAAAACAAACACTTAGCGCAGCCACTACAATAAGGGTAGTGCAGGCCCTCATCAAAAAAGTTCTTTAAAAATCAAAGTATTTTCACACTATTGGCCTA # Right flank : TCCAGTTTCATTTCGTTTCAATTTTAGAAAATATCTCTAGGGGATTCCTTGCACGGGGTTCGACATAGGTTCTGACCACTTTCGTTTATTGATCGTTGTGAATGGCCATGCTGTTCAAGGAGCCTTTGATGCCACTGCATTTTTCATCTGAATCCCCCCCTCAAACCACTTGCACAACGCCACCACTTGGGCGCAGCGCTTTCACACGGCTAGCTGTCGCTGTTGCCGCTTGCGGTGCGTGCATGCTCTGCCCGAACGTTTTGGCGCAAACCAGCGCTAAGGCAACGGCGGCGGCCAACATCACACTGCATGTTCCTGCTCAAGCGTTGGGGCCAGCGTTGAATACGTTGGCACAACAAGCGGGGGCGCAAGTGCTGTTTGCAGCACATTTGACTGAAGGCAAGTTTGCGCCTGCATTGCAAGGCAATTTTTCGTTAGAACAGGCCTTGAGTCGCCTGCTCGAAGGCAGCGGTTTGGTAGCCAAGCGCAGCGGCAATGCT # Questionable array : NO Score: 5.64 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCTGCCGCATAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCGCTGCCGCATAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 148813-150099 **** Predicted by CRISPRDetect 2.4 *** >NZ_STFG01000002.1 Lampropedia puyangensis strain 2-bin Scaffold2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 148813 32 100.0 34 ................................ GCGTAGGGGTAGAGATTGACCGTTGGTTGATCTC 148879 32 100.0 33 ................................ ACGTCTTGCACGTCAGCGTTTGCAGTAGTCATG 148944 32 100.0 34 ................................ GCGTAGGGGTAGAGATTGACCGTTGGTTGATCTC 149010 32 100.0 34 ................................ TCTTCAAAAATACGGGAAACACCAGCAGCCTTAA 149076 32 100.0 33 ................................ AATTTCTCAAGGCGGCCTGTTTGTTGGACGGGT 149141 32 100.0 34 ................................ TCGGGCCAGACAAAGAGGGCGGAGGACGCGACAC 149207 32 93.8 34 .G.......................G...... TCTTCAAAAATACGGGAAACACCAGCAGCCTTAA 149273 32 100.0 34 ................................ TCGGGCCAGAAAAAGAGGGCGGAGGACGCGACAC 149339 32 100.0 34 ................................ AACCGCGAAGCCCGCCTGCGCGCGCCGGGTAAGC 149405 32 100.0 35 ................................ TCTCAAAAGAGGAGGGGCGAGAACTAGGGATAAAG 149472 32 100.0 34 ................................ GGCCTGCATCTGCGCTATGCGCGTCTCGTAGCGC 149538 32 100.0 34 ................................ GAGCGGAGCGCGGTGGAAGTGTCACAACTCCTAA 149604 32 100.0 34 ................................ AAAGCACCGCTGGTGCGCGCAATCCTCAGCGGCC 149670 32 100.0 34 ................................ TGCTATTGATGCGCCGGAATCTGGTCAAGATTTT 149736 32 100.0 35 ................................ TCACTGATGTACCAAAGCAGTCAGGCAACACAAGC 149803 32 100.0 34 ................................ TCGACCCTGGTGCTGCAGCCGATTGTGAATTATG 149869 32 100.0 34 ................................ TAGGAGAGCACTATGAGTGGTGGTTTATATCCCG 149935 32 100.0 35 ................................ ACCGATATAGCAATCAGCAAAATCGACGAAATAAA 150002 32 100.0 35 ................................ CTATCGCGAGATGTCGGAGGATGAAGCGGCACGAA 150069 31 75.0 0 ..T................T..A.-C..CGC. | ========== ====== ====== ====== ================================ =================================== ================== 20 32 98.4 34 GTCGCGCCTCCCGCAGGCGCGTGGATTGAAAC # Left flank : ACTGCACAATGGGTGGCCCTCAAAGACAAGTTATGTAGCCTGATTGACCCTGACCTCGACAGTTTGCGCTTTTATTACATGGGGCAGAACTGGAAACATAAAGTCGAACACATTGGTGCAAAGCCCAGTGTAGATTTAAATGGCCCATTGGTTTTTTGAGCGGCTGTCACCAATAAAACCGGTTTTGTAGTGAAGTCTCACAAACGTTCTTGCCGCACCTACGAGAGCTACAGCCTATTTTCCTGAGCGTAAGGGAAACAGGGCGTGCATGAGGCTGCTGGTTTAGCTGCTTTTCTCTTTATTTCGCACATTACCCCCTGATTTTGCGAACTATAAGTGCTTGAGCACTTCCAAGAGTGGTTCGCATTTTTCTAATGCATTGATATTAAATAGTATTTTCTTCTAGAGTCGAGAGCCTGTACGGTAAAAAGTCTAAAAAATACCTTGTTCGCATTTTGTTCAAAAAAGTGCTTGGCGCTACAACAGGTTATAAATGCGCC # Right flank : CAGCCTGCTCAAGTGACTGTCAACCCGATCGTCATGCAGACTGGGCGCAGGCTCTTCCAATGTCGCTTGTTTATCCGTCGGGCAATTCGCGGCTGGCCAGTGCGGCGGCAGCAGCGCGGGTTTCTACGCCTAATTTCTCAAACACGTGTTCTAGGTGCTTGTTCACGGTGCGTGGGCTGAGGCCGAGGATGTCGGCAATATCGCGGTTGGTTTTGCCTTTGGCTACCCAGGAGAGCACTTCGGTTTCTCGTGGCGTGAGTGCTGCATTGGAGAGCCTGTTGCTGGTTTCGTTGACAAGGGGGCTGCCTGCATCGCTGTTGAGCAGAGTCAGAATCAGCATGGCTTCGGCCGATCCCGGTGCTGCGGTGTTGCGTACCCGCAAGCGCAGTTGCGACTCCAAAGGGCATTCAAAGCGGTCTTCTGTTTGCAAGCGCTCTAGCCAATCGCTGGGAATACGTGGTCGTTGGCTGGAGCCGTGTGCGCGCGCAAGCCTTTCGAGC # Questionable array : NO Score: 9.18 # Score Detail : 1:0, 2:3, 3:3, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCTCCCGCAGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [2-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0 Confidence: HIGH] # Array family : NA // Array 1 58357-58925 **** Predicted by CRISPRDetect 2.4 *** >NZ_STFG01000003.1 Lampropedia puyangensis strain 2-bin Scaffold3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 58357 28 100.0 32 ............................ AAATCGCAAGCCAATTAGATTAATCGGCGCTG 58417 28 100.0 32 ............................ TCTTCCGCCCCCTTTCAAAAATGCTGGGCTAG 58477 28 100.0 32 ............................ AGCTCCAGCAATTCGCGGTTGGTCATGCCGCC 58537 28 100.0 32 ............................ TTGCTGCGTGTAGCACTGGCACCGCGTGCCCA 58597 28 100.0 32 ............................ ATCACGGCAACGGCCTTCATCGTCTGGATTCT 58657 28 100.0 32 ............................ CCGGTAATCCCGATGATGAGGTGAAGACCTGT 58717 28 100.0 32 ............................ TTGCCCAGATTGAATGAGAACTTTGCCTTGAT 58777 28 100.0 32 ............................ GGATCAAGAGCCGACGAGGTGGAGTCCAAAGG 58837 28 100.0 31 ............................ GCGTGCAAAACATCGCAGGCATGGCGTTGTC 58896 28 78.6 0 ........T......A..C.A.A....T | A,A [58916,58919] ========== ====== ====== ====== ============================ ================================ ================== 10 28 97.9 32 GTGACCTGCCGCACAGGCAGCTCAGAAA # Left flank : CTCGTTGCAAACTTTGCTCAACACCGACTGGCTGCGTGGCATGCGCGACCACACGCAACTGAGCGCAGTGGCTGCGGTGCCAGCGACGGCTGAACACCGGCACTTCACGCGCCGGCAGTTCAAAACCAACGTGGAGCGCCTGCGCCGCCGCCGCATCAAGTGCAAAGGCGAAACGGCGGAGCAAGCAGAACAGGCCATCCCCAGCAGCGTGGAGCGCCAGCCTGATCTGCCCTATGTGCACCTGCGCAGCAGCAGCACAAGCCAGCCGTTTCAACTGTTTTTGGCATTGAGCGAGCCCGTATCAGCATCTGTGCTGGGTCAGTTCAACGCCTACGGCTTGAGCACTACCGCCACCATTCCGTGGTTCTGACCCTTTTTTCTGGCGCCATCTAAGCACCTAGAAAAATCAATCACTTAGCGAACACTCAAAAATTTGGGTGTTTTGCTTTGTGTTTGGACTTGTTCTTTAAAAATCAATGGATTGGACGATTTAGAATCTA # Right flank : TTCTCCCTTTCTTCTGTGGATCACCTCCTCCTCTACAATGCATCGCTATGGCAAAAACTGATTTTGATGTTTGCATTCGTGGTGCTGGTATTGTGGGGCGGGCGCTGGCGCTTACACTGGGGCAAGCGAAGCTGCGTGTAGCATTGGTTGATTCTGTGCGCCCTACTCCGCGCATTGTCGAACGGGATATTCGCGCATATGCGCTCAACCATGCGTCAAAGCGCTTACTCGAGAGCTTGCGTTGCTGGCCTGAAGGCTCTGCCATTACGGCTGTACGCCGCATGCAGGTGCATGGCGATACGAACGGTTCAGTGCTATTTGAAGCGCCGGCCTCCGCAGCAACACTTAATAACAACCAGCAGACTGAGCCAAATCATGCGCAAGACCATAGCGATCCTTTGGCATGGATCGTGGATGTTCCAGCCCTAGAGGACATTCTTGCTGCCGCATTACGTTTTCAAAGTTCGGTGGAAATTGTGCGAGCTCCAGTTGCAGCGCCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGACCTGCCGCACAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCGCTGCCGCACAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //