Array 1 544173-544994 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABTYN010000061.1 Escherichia coli strain MCE20 NODE_2_length_618966_cov_30.3733, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 544173 29 100.0 32 ............................. TTACGCCATCAGTTGAATATGTGCGCGCCATT 544234 29 100.0 32 ............................. CGCTACTTGCGCCGGGCGCAAAACTTGGCTGA 544295 29 96.6 32 ............................T GGATCTGTGGGATTATCAACGAGGTCAAATAA 544356 29 100.0 32 ............................. CGTACGCGATGTGGATCAGTGCCGCGTTCTCT 544417 29 100.0 32 ............................. GCGAACTCGTAATTTATCAGGCTCGAATTCAG 544478 29 100.0 32 ............................. GCGCTCACGTTTAGTGCCAGAGCCAGGCGGCG 544539 29 100.0 32 ............................. TCGCTGGCTACCCTGGGGGTATTCAGTGACTA 544600 29 96.6 32 ............................T TGAGATGCCGTTTGCCGTTTTTCTGTTTTTTC 544661 29 100.0 32 ............................. TTCTCAGGCTTTACCCACTCTTTTACAGTGTC 544722 29 96.6 32 ............................A GAAGTTCGGCATTGCCCGCAAAGATTTGTCAC 544783 29 100.0 32 ............................. TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 544844 29 93.1 32 .A.C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 544905 29 93.1 32 .A.C......................... GACGCCGCCGCCGCGAAGCCGTTTCCGATGTT 544966 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 14 29 97.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGAATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTGTAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 570697-572130 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABTYN010000061.1 Escherichia coli strain MCE20 NODE_2_length_618966_cov_30.3733, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 570697 29 100.0 32 ............................. ATTAACGCGGCCCGCCTCTGCGTTGGCGTGAA 570758 29 100.0 32 ............................. CGCGTTTCTGGAACCGTAATTTGCTGCGGTAT 570819 29 100.0 32 ............................. CTATTGGCCTCACTGCCACCGCAGTTAATACT 570880 29 100.0 32 ............................. GTGGTTACCTAGTTGCTATGTGTTCGTGACAA 570941 29 100.0 32 ............................. CGCCGAGCGTGGCGCGGATATAAAAAAGCCCC 571002 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 571063 29 100.0 32 ............................. ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA 571124 29 100.0 32 ............................. GCAAACAGCTAACCACCGCCGGGGCGGTTTCC 571185 29 100.0 32 ............................. CGATGATGTAATAATTAGAGCAGAATCCAGTT 571246 29 100.0 32 ............................. CAAAATTTAAAATCATTTAAGCTTGTAAAACC 571307 29 100.0 32 ............................. GGTACACGGATATTCTGTCTAAAAGTTAACTA 571368 29 100.0 32 ............................. AATGACTTTATCGACCGCCCGATCGATGTTCA 571429 29 100.0 32 ............................. CTCCGCTCTGTGTTCGATAAACTCATCCAGCA 571490 29 100.0 32 ............................. AATTAAAATCCCCGTTTCTGTTACATGGGCGA 571551 29 100.0 33 ............................. AATTTTCTTCATTGCTCAAACAGGCTGCATAAC 571613 29 100.0 32 ............................. TATGCCTCTTTTAAACGCGCCGCCTTTTTGCC 571674 29 100.0 32 ............................. ACGAAAATCGCCGCCGGTGTCCTCGCTGATCA 571735 29 100.0 32 ............................. GACTCAACCGCGCTTCCCGGCCTCACCACTGC 571796 29 100.0 32 ............................. GCGAAAAAATACGGCTGGATGCGACAAAAAAA 571857 29 100.0 33 ............................. GAGAAGAAGCTCCTGAGCTAACCGTTGAAGAGC 571919 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 571980 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 572041 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 572102 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 24 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGACTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTTTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //