Array 1 13977-15895 **** Predicted by CRISPRDetect 2.4 *** >NZ_BNBY01000040.1 Kitasatospora xanthocidica strain JCM 4862 sequence40, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 13977 29 100.0 32 ............................. CTGGCCAGCTGGACGGCGGCCGGCGTCGTCGC 14038 29 100.0 32 ............................. CCGGGCAGCGGCCGCCCGCGGCGCCCGGCCGC 14099 29 96.6 32 ............................T TCGGGTGAACAGGTTGTCGGGTTCGGGCTTGG 14160 29 100.0 32 ............................. CGCAGATCGCCGCCTACGCCTACAACGCCGGC 14221 29 96.6 32 ............................A GGACATGGTCACCCAGGCCGACGACCTCCGCT 14282 29 100.0 32 ............................. GGATCATCAGCCCCGCGTACTTCTGCTGGCAG 14343 29 100.0 32 ............................. ACCGACGGCACTCCTCCCCGGCGTCACGAACC 14404 29 100.0 32 ............................. GCCCCGAGCGATTGCAGGGCCGCCGTCACCGT 14465 29 96.6 32 ............................A GCTCGGCGGCGAACTCCTGCCGGATCTCGGCC 14526 29 100.0 32 ............................. CCGATCTCAGCGGGGTGGGTTAACAGGCTCAA 14587 29 100.0 32 ............................. GCTGCGACCGACGGGCCGGTCACCGTGCTGCA 14648 29 100.0 32 ............................. GCCACCAAGGACCGCAAGCCGCTCACGCTGTT 14709 29 100.0 32 ............................. GCCTTCACCGCCGAGGCCCGGGTGGGCAGTTT 14770 29 100.0 32 ............................. CACCAGGTCCGCAGGCTCAGCCTCTACCTTTC 14831 29 100.0 32 ............................. AAGTGGTCGAACTGGCTGTCGGTGATGTAGGC 14892 29 100.0 32 ............................. GTGCTCGCGCAGAAGTTCGGCGCGCGACCTGA 14953 29 96.6 32 ............................A CGTAAACGCGGACGTGGGCGCTGGTGGGGTGG 15014 29 100.0 32 ............................. ACGTGAGCATCGGCAACGTCTGGGGCCCGAAC 15075 29 100.0 32 ............................. GTGGCCATGCCGACGGTGTGCGACTCGGCCCC 15136 29 100.0 32 ............................. GTGCTGGCAGCGGGCACCCCGGCGGTCGGGCT 15197 29 100.0 32 ............................. CTGCCAGTGCGCCAGTCCTGGCGGATGGAACG 15258 29 100.0 32 ............................. GAGCGTCGGACGGCGTCGGCCGCCCACCGGTT 15319 29 100.0 32 ............................. CCGCGCTCCAGGAGGCGGTCGGTGGTGGTGGC 15380 29 96.6 32 ..............C.............. AGATGTGAGATGACATGACTGTTCCTGACTTC 15441 29 96.6 32 ..............C.............. TCGAGCGCGACCATCTCCCGCCCGCGCCAACC 15502 29 96.6 32 ..............C.............. GCGACCACGATGCCGCCCGGCACGGGCGGCGG 15563 29 86.2 32 .............TC..A.....G..... TCCGGTCCGGAGCTGCGTGCGGCAGTCGACAC 15624 29 93.1 32 ..............C.............C GTCGACGGCATCGCCGGATGGACGTGTAGGTG 15685 29 93.1 31 ..............C..A........... CCCCGGCCGCGTCGTAGACGGCGGTGACGGC 15745 29 96.6 32 ..............C.............. GACCGGGGCCTGACGGTCTGACGTCCTAGGCT 15806 29 96.6 32 ..............C.............. CCGGAGGGTGCTCCGTTCGCGGCTTCGGCCGA 15867 29 96.6 0 ..............C.............. | ========== ====== ====== ====== ============================= ================================ ================== 32 29 98.1 32 CTCCTCCCCGCACCTGCGGGGGTCAGCCG # Left flank : ATGTCTGAGGGTCTATCAGCTGCCACTGACAATCCTTTCGGCCCTCTCATCGGAATCGACGGCAGGCGAGGACCTGGCCGACGGGGGCCGCGGCGCATCGCCCGAGGTCATAGGCACCAGGAGGGCATCGGCGGGTAGTTCGTGTAACGATTCAGGCACCACCAAACAGGCTGAACCACCCCTTAGGTTGGAACTTTTGGCTACCGCCGGACCTGGCCATGGGCGCTGGGGACCCCGGCGATCGAGACAGCCTCCAGGCGCAATGAGCTCACCATCACGAGTACACGGTTACCGGCTCGCCGTCGCTGCACAGGAGTGGGGCCCGCCCCGCCCCAATCGTCGACGCTCAGAAGCCCCCTCCAGGCTCCGAACCGCCCATGGCATCATGTGAGCGATCCTTGACATCTCGACACCGCACAACGCACTTGGCAAGGCGTCAGATAGCTCGCCCACATGGTCAAGAAATTGCAAAGCCGTCGCTGCGTCGCAGGTCAGGAAGT # Right flank : GATCTGCAGCAACAGCCTCGGTGAGCGCCTGCACGCCCCCGCTCGGGACCTCAAGCGGGGGCGTTGCTGTGCCCGCCGTCAGGCCTCGGGGAAGCCGTGGAACTTGGTGACGGTCTTACGGCCGCAGCGGGCCATAAGGAGGACGGGGGTCCACAGGCCTGCGATGCAGATCATCATGAAGGTGTGGACCGATGATCGCGATCGGCCCCATCTTGCGGCGGGTCACAACTTTGGCACGGGTCTCCTCCTGCTGGCCGGTGGGCCCCGAACCTATCGGGGCGGTAAGCCCGGCCCCGGCGCTGTGGCTGACCCTGCGACCAAACCGGTCAAGCCCGTTGCGCCAGCCGGTACGGGCCGAGGAAGAAGCTGAGCGCGGCGTGCGACGGGCCGTCGTTGACCTCGCCGCTCACCAGTAGCTTGACTACCTCAGTCTCCGGCAGCCACTCCACGCGGGTCGACTCGGAGGCGTCCTCCGGCGCACCAACCTGAGTGCATCCGGT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCCTCCCCGCACCTGCGGGGGTCAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTCCCCGCGCCCGCGGGGGTCAGCCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 52860-51916 **** Predicted by CRISPRDetect 2.4 *** >NZ_BNBY01000025.1 Kitasatospora xanthocidica strain JCM 4862 sequence25, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 52859 29 100.0 32 ............................. GGGACGACGGACTACCGCCCGGGGATCGCCGG 52798 29 100.0 32 ............................. CCGCACCCGAACACCTGGGACCACGCCGGATA 52737 29 100.0 32 ............................. GAGAAGACCAACAAGCCTTCCGTCCCTCCGTC 52676 29 100.0 32 ............................. GCCGTCACCGAGCGCGGCCTGGCCGTCGATCC 52615 29 100.0 32 ............................. GGCGGCGATGTCCTCGGTGGTGATGTCGAGCT 52554 29 100.0 32 ............................. CGTTGTTCCGCTTCGCTGCCCTTCCGGCGGTG 52493 29 100.0 32 ............................. AGGAAACGTGACGGGGCCGAGCGCGTGACGAC 52432 29 100.0 32 ............................. TCCCAGCGCGCCTCCCGCTGGGGGCCGTTGTG 52371 29 100.0 32 ............................. CCCGCTTCCTCGCCGATTCCGCGCGGTTGTTC 52310 29 100.0 32 ............................. TGTTCGCGTCTGCTGGCACGTCGAACTGGGCG 52249 29 100.0 32 ............................. TCCTCGAGGTCGTCGCCGTCCTGGTCGCCGTC 52188 29 100.0 32 ............................. GGTGTCTTGTCCAGCAACGCAATTCCCATCGT 52127 29 100.0 32 ............................. CGCGGGCCGACCGGCTCGCCGCCGTCCTCGGC 52066 29 100.0 32 ............................. TGGGGCCGCATCGCCGACACGCTGTCGGACCC 52005 29 100.0 32 ............................. TTCAACGACGTAATGAACAAGATCGTTACGTT 51944 29 93.1 0 ......................G.....A | ========== ====== ====== ====== ============================= ================================ ================== 16 29 99.6 32 CTCCTCCCCGCGCGAGCGGGGGTCAGCCG # Left flank : CCGGACGGCCGCTTCAAGCGCTTCACCTACGAGAACCTGATCAACCGGGATGACGCCAACCTCGACCTGACCTGCCCGATCGCGCAGCCGACCCCGCCGGATGACAGCCCGCCCGAGGTCATCGCGGCCGAGATCTCGCAGAACCTGCGGGCCGCACTCGCCGAGTTCGAGGCCATCACCCACACGCTCGCCCAAGCGCCATCGCCGTCCCTGTTCTCGGATTCGGCAGAAGCCGCCGATCCCGCCTCTGGCGGGTGAGTTCCAGCGCCCGTGACAACTGTCGATCGAGAACGTTCTCTCTCCCCCACCCACGGGGACCCAGTCCGACCGCCCTGTCCGGGACAGCCCATGCCAGAACCGCTCCCCTCATCGTCGGGGTGACATGGCAGGATGGACCACACGCCTTGACACCACGACAGCTCACCGAAACCGGCATCTCGTCGGCCACCCGGCGTGGTCAAGAAACAGCAAAGGCCTCCCTCCGTCGCAGGTCAGAAAGT # Right flank : GCACTGGCATTGGGGCTCGCGGTCAGAGAGTTCGCGGAACCCCAAGGGCACCCCCTTGAGCGGCCGGCCGCGTCAGCGGGCGGCGCGGCTCGCGGGGGTGTCCTTCGGGCCGGTCAGATCGGCCGGACGTTGGAGATCCAGCGCTTGTTCGCGTCGAGCTGGTGAGGCGCCTGGCTTTCCGGCCCCATACCGTTGCCCCATTGCTGGGCGGGCGCGCCGTTCTCGGTGTCCCAGTCCGCGATCTCCAGCAGCCTGCCGGAGTTCTCGTTGATCAGATTGCCCGCGCTGTTCCCATCGAGGAAGGGCGAGGGGTACCAGTACTGGTTGATGCTCCCCGTGCACGTCCACTGGCGGGCGGGCGCGCCGTCCTCGCGGTCGAAGTCGGCGATCTCCAGGCACTTGCCGGAGTGGCGGTTGACGATGGTGTACTGGCCGCCGGGGTGGTACACGACGTCCCACAGCTGGTTGTCGCCGCCGTCGCAGTCCCACTGCTGGGCGGG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCCTCCCCGCGCGAGCGGGGGTCAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTCCCCGCGCCCGCGGGGGTCAGCCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.20,-13.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 72357-71963 **** Predicted by CRISPRDetect 2.4 *** >NZ_BNBY01000025.1 Kitasatospora xanthocidica strain JCM 4862 sequence25, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 72356 29 100.0 32 ............................. ACGCCGCACGGCGGTGGACGTCCACACGGAGG 72295 29 100.0 32 ............................. TCGCGGCCAGGCGCGGATCAGGGCGGCCGTCG 72234 29 100.0 32 ............................. TCGACCAGCAGCCGGCCCTTCCCCTTGCCGGC 72173 29 100.0 32 ............................. GTGCTCCTTCAGGGAGCCGGAATCCGCTACCG 72112 29 100.0 32 ............................. TGGGAGATGCCCGCGATCCAGTTCACGGGCGA 72051 28 86.2 32 G..........A.C-.............. GTGAGGACGCCTGCCCGGTCGACGTGGTGGGC 71991 29 82.8 0 A........A.A.CT.............. | ========== ====== ====== ====== ============================= ================================ ================== 7 29 95.6 32 CTCCTCCCCGCGCGAGCGGGGGTCAGCCG # Left flank : CGCGCCGTCTGCACCGACGACGAGAAACGCGACTTCCAGAACATCGCCATGCTCGCCTGCAGCCTCGGCTGCGACAGCCTCTACGAACGCGGCTACATCACCGTCACCGACACCGGCCACATCCGGATAAGCCCCCTCGCCCACACCATGCCCGGCGTCCACGACCACATCCGGCAACACCTCGCCGACCGCACCGTCCCCTGGTGGACCCAGGCACGCGAACCCCACTTCCACTGGCACCGCACCCACACCTTCAAACCCGACCCGCCGGCGTAGGAGCCGCCTGTCCGGCCGTAGCGGTCTCCGCGCGGACAGGGCCCGGCCCGGCAGCCCCCATCCGGGAGGCCCGTACCAGAACCGCTCCCCTCATCGTCGGGGTGACATGGCACGATGGACCACGCTCCTTGACACCACGACAGCTCACCGAGACCCGGCATCTCGTCGGCGTCCGGCATGGCCAAGAAACAGCAAAGGCCTCGCTCCGTCGCAGGTCAGAAAGT # Right flank : GCCTGGTGCACTCGGGACCGCCGACCCTATACGTGACCAGCGGAAATGCAGTCCCCAAGCCCGGAAAAACAACAGCCACTCACTCTGGGATAGACCGGCAGCTGCCGCTGGCCCGGACATCTGCCCTCTATTGCGCGTCAGCGCTGGGGCCACTGCTTCCGCTGCGCCCCGGGGTGGTGGTCGAGAGAGCCAGGCCAATGGGCAGCCGGTTGGCGATGAGTGCAGCCAGCTGCTGGGCCTGGTCGGACGAGAAGCTTCCAGAGATCGTCGCGTTGCCACCGGGGATGGATTCGGTGACGTACGCGTGCGACACGACCGCGCCGTCCAGCACGATCGCGAACTGGTTGCTCGGGGAGGGCTGCGTGGCAAGCCTGCCGGTGACGTCGGCGAAGGCCCGGCCCCCGACGCCGTTGAACGAGAGGTTGATCTGCCAGCCGGCGCCGTTACGGTCGTCGAAGGCGGCCTGCGCTCCGGACACGTCCTTGCCGTCGACCGCGACG # Questionable array : NO Score: 6.04 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCCTCCCCGCGCGAGCGGGGGTCAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTCCCCGCGCCCGCGGGGGTCAGCCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.20,-13.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 110421-109051 **** Predicted by CRISPRDetect 2.4 *** >NZ_BNBY01000025.1 Kitasatospora xanthocidica strain JCM 4862 sequence25, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 110420 29 100.0 32 ............................. CGCTACTCGGCTCGGTACCTGCCTGACCTGGC 110359 29 100.0 32 ............................. GTGGTGACGCGGCCGGGTAGACCGGGCGGATC 110298 29 100.0 32 ............................. CGAGCCTCCATGGCGCGGAGGCTGCGGGGCGG 110237 29 100.0 32 ............................. ACGCAGTTCACGTTCGAGCTGCTGGAACGTTC 110176 29 100.0 32 ............................. CTGCAAGGGGGAACTGCACCATGTCCGTGACC 110115 29 96.6 32 ............................A CTTCGGTTTCCTGCTTTACATCCCGGTGGAAA 110054 29 100.0 32 ............................. CGCACAGGGCCAGCCTTCGGCAACCTCTATTT 109993 29 96.6 32 ............................A CTGTTGCAGTTTCCGGCGTCCGGGCCGGTTCC 109932 29 100.0 32 ............................. GTGGGAACGCGCATGAACAGGATCGCACCGCC 109871 29 100.0 32 ............................. GTGCTCAAGGACGACGGGATCACCCCGCCGGC 109810 29 96.6 32 C............................ CTGAAGAAGATCAACCGGTCGGACATCGGCGC 109749 29 100.0 32 ............................. GTTCGCGATCATCTGCTCGACGGCCTGCTCCT 109688 29 100.0 32 ............................. CAGGCCAGCAGCGGGCCGAGGACGTCGGTCTC 109627 29 100.0 32 ............................. CCAGAGAGGCCAGCGCCATGACCGCCACCGCC 109566 29 100.0 32 ............................. TCGCGGGAGAGCCGGTAGTCGACCTGTTCGGG 109505 29 100.0 32 ............................. ACCTTGAGCACGTCCCAGGCGTCACGGCGGCG 109444 29 89.7 32 .....T.......TC.............. ATCAAGGACACCATGGGTAGTCCAATTTGGAA 109383 29 93.1 32 .............TC.............. CATTCGATCTGGGTGGCGGGAGCAGGGGAGGG 109322 29 93.1 32 .............TC.............. GTGATGCGGTCTATGGCTTCGTCGACCTCTGC 109261 29 93.1 32 .............TC.............. CGGCCGTGGTCCTGCCACCACTGCACGGCCTC 109200 29 96.6 32 ..............G.............. CCCTCCTGGAGGAGGTAGGCGTTGAGGTCGAC 109139 29 93.1 32 ...............A.....C....... CCCTGAGTCTCGGGCATCATGGGGCCGTGGAG 109078 28 89.7 0 .............GC.......-...... | ========== ====== ====== ====== ============================= ================================ ================== 23 29 97.3 32 GTCCTCCCCGCACCTGCGGGGGTCAGCCG # Left flank : CGGCGAACGTCGGCCTCATCCGGCTCCTCGCCGCGGGCACCCTGGACCTCGCCCTCGAACAGGTCCGGTCGTTCGGCCTCGACGCCGTCAACGACGCCGTCGCGTACGCCGCCTCACACGGTGGCCCGTTCGACCGCACCGCCCTCACGCCACCGGCTCGCTGACGAGGCCTATCTCCCCACGTCGGCGCCACGGCCCGCTGCCCTCACGGACGAAGGCCACCGCCGCTGCAGCAATGTACGACTGCGCGCCGCCGCCGGATACCGCTACGGCGGACCGCCCATTTGGGCCCGGCCAGCGACTGAGGCCACCGCCTCGGACCCGAGATTCGGCGCATAGCAACCTTCACAGGTGCTCCCTTGCACGGCACAGGCACATGGGATGCTTCTCTGGAGCCCTTTGACACCTCAACAGCCCGCACGCCTCGTTGAGACCTCGATGCCAGTACGCCAACTGGAAAAGAAATGGCAAAGCCACCACATCGCCCCAGGTCGCGAAGT # Right flank : GAGCACCGAGGAGAGGAGCGCTGCCATGAGCCAGCCCGCGCACGACGGGATCGAGCTGATCCCCCGGCCCGACCGGAGTCCGGCCGCGCTCAAGGCCGCCCTGGCCGTCGTCGCCGCGGATCGCCTCCCGGAGATGATCGACGGGCAGACGAGGGCCATGGCCGAGGCCATCGAGACCGGGAGCGTGCAGCCGATCCGCTCGTTCGTCGCGCACTGGGCCGCCGTTGTCGAGATCGAGCGCCTTCCGGACACCGCCCGGGCCTACCACCGGGCGAACTATCTCGCGAACCATGCCGCGACCGTCGCCGAGTGCCGTGAGCACGCCGCCACCGTCGCCGAGCTCTACCGCGCCGCCTACACTGCGGTGAACGCGTGACCTGGAGCTGGGAGTACCTCCCCAGTGAGCAGCACGTCACGGCCGGAGCCCCGGCTGAATTCCTTGCCTCCGTCGAGCAGCGGGCTGCGGAACTCGTCCGCGCTTCCGCGGCGCTCTACCTGGA # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.94, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCACCTGCGGGGGTCAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTCCCCGCGCCCGCGGGGGTCAGCCG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 26915-27614 **** Predicted by CRISPRDetect 2.4 *** >NZ_BNBY01000045.1 Kitasatospora xanthocidica strain JCM 4862 sequence45, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 26915 29 100.0 32 ............................. CGCGTCAACCCGAACCGCACGGACGGCCAGGG 26976 29 100.0 32 ............................. ACTCACCTTGGGTTTCAGCTCCTTACCAACTC 27037 29 100.0 32 ............................. CGCCAACGCTGGGCAGCGCGCTTGGTCGCCTC 27098 29 100.0 32 ............................. ACCCGGGTGGCCTGGGTCCCCTCGATCACCAA 27159 29 100.0 32 ............................. TTGTGGTGCGAGAGCACACCCCCGCGCGGTCC 27220 29 100.0 32 ............................. GACCGCGGCCTGCATCATTCGCCGCATGAACT 27281 29 100.0 32 ............................. ATCAGGATTGGTCGGTACGGGTCGATTTCGAG 27342 29 100.0 32 ............................. CCGGACTCGCTGCCCCAGGTGTCCTCGAAGGC 27403 29 100.0 32 ............................. CCACCTGTACCGGGCCTTCGGCGTCCGGAAGG 27464 29 100.0 32 ............................. ATGCCCGACTCCCACGGCTCTGACGTCGTGGT 27525 29 96.6 32 .............A............... GATGTCACCGGGTACGTCTGCATCCTCCGCAA 27586 29 96.6 0 .............A............... | ========== ====== ====== ====== ============================= ================================ ================== 12 29 99.4 32 GTCCTCCCCGCACCCGCGGGGGTCAGCCG # Left flank : CGAGCGCTGAGCCCACGCCGAGCGCCGATCGATTTTCCGCGGAAAATTCCGAGCCGGTCCCGATGCCGGAGCAGCGCGAGAAGCCGGCAGCCGCCACCCAGCCGGTGGAGCTCGGCACCGTCGACTGGCACAACGTCGAGGAGTTGGCAGACGCCATCTGCCGCACCCTCTCGGCCGACGAGGCCTACCGCCTCGCCGACGCCCTGGCCAACCGTCTGCTGACGACCAACAGCTGACACATCCGTGGTGTCCCGCCGCACCTTCGGGTGGGGCGGGACACCGCAGCTCTTCGAGGCGCCGGCGGCCAACGGGGCCGACTGTTTCTCCTTGGTCGACAGGCCGAGGACACTGCAAGGCGCGCGTGGCGCGATGTCAGGTGCTCCTTGAAAACTCGACACTCTGACCACGCCACCTCTGACAACACAGTGACGGGCTTCCAGACCTGACATCCCATCAGTCAAGAAATGGCAAAGGCGCTGCTGCGCCGCAGCTCAGGAAGT # Right flank : GCTGTCGGTGATGCTGAACGCCGCACCGGGCCTGCGCACAGCGAGTATCTCCAGCCGTCTTCGGGCGCTGAGCACTCGCCTCGCCGAGCCCGCCTACGCAGGCTCCCCTCTCGCCCTGAGTCTCCGTGAGAATGTCAGAGAAGCCTGCTCCCGATCCGCACTCACGAACCCGCCGGAGCTGCGACAGTGACGAGCAACACCGCACGGCAGGACGCCGCAGTCGTCGACAAGTCCGTCCTCGCGAACAGCGCCTACGCCGACGGACGCCACCTGGCCGCCCGCCAGTCGATCTATCGATGGCAGCAGCCGCAGTACGACTTACCTGGGATCGTCGTCGAAGAGCTGGCCCGCACAAGCAGAACCGTCCTCGACGTTGGCTGCGGCAACGGCAAGTTCGTCAGCCGCCTGCACAAGGACCGCCCAGACCTTCAGGTCATCGGGATGGACATCTCGACGGGCATCCTCGCCGACGTTCCGAAGCCGGTCCTGGTGGCCGACGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCACCCGCGGGGGTCAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTCCCCGCGCCCGCGGGGGTCAGCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [43.3-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 34077-35067 **** Predicted by CRISPRDetect 2.4 *** >NZ_BNBY01000045.1 Kitasatospora xanthocidica strain JCM 4862 sequence45, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================================================== ================== 34077 29 100.0 32 ............................. ACCATGACGAACTGGCTGGTGGAGATCAACAT 34138 29 100.0 32 ............................. TCGTGGCCAGCAACCCGGTCGACGATGTCGGT 34199 29 100.0 32 ............................. TCTTGAACTTCAAGACTTTGGGGGTATGGGTG 34260 29 100.0 32 ............................. GTGGAGCCGTCGACCTCGCTCACCATCTCGGC 34321 29 96.6 32 ............................T CGTCCGGATATCCGGATGAGCCGGTATCCGGC 34382 29 96.6 32 ............................T CGTCCGGATATCCGGATGAGCCGGTATCCGGC 34443 29 100.0 32 ............................. CTCGGCTACGGGCACTCGTGGGCGCTGGTGCC 34504 29 96.6 32 ............................C GCCGACGCTCTGGCGCGGGTCCGCAGCCAGAT 34565 29 93.1 32 .........T....C.............. CCGAGCGGGCCGCTGCCCGGCAGCAGGCCGCC 34626 29 93.1 32 ...........G..C.............. ATCGGTTGCAGGTTCTCGGCCACCGCCGAATA 34687 29 75.9 78 ..T....T...GGTC...A.......... TACGGCGACGTGTGGGGCCGGTTCATGATCTGACTCTTCCCACCTGCAGAGTTGCAGATACTCGGCGACCACTGCGTA 34794 29 82.8 32 A.......A.....C..C..........A GTCCGCACCATTCAGCGGTCTGGGATCCGCTC 34855 29 79.3 32 .CT........GAA....A.......... CGGATCCAGTTGGAAGCGGTGCACAAGGTCCT 34916 29 89.7 32 ....C...T.....G.............. CAGCCGAGTGGTCCTGCACCAGCATCGCCCGG A [34940] 34978 29 75.9 32 T..T..T....G..C..C....C...... GTGCCGCACAAGTCGCTGGAGGTCCTGGACGA 35039 28 72.4 0 ....CT...AT....T......-....TA | T [35053] ========== ====== ====== ====== ============================= ============================================================================== ================== 16 29 90.8 35 GTCCTCCCCGCACCTGCGGGGGTCAGCCG # Left flank : GCCGTCTCCGGATGCTCCGGCGCCCACGGCAGCGGCGCCGCCGCCTGGCCCGCGGCCGGCGTGACGTCGACGACCACCGTGTCCGACGCCCGCAGACGGCCGGCGCGGCGCTTGCGCGGCACCTCCGGAATGGTCGGCGGACTGAACAGCTCGATCGCCCGCCAGCACTCCAGCAGATCCCCCACCCGCCGGCCCCGCCCGTCCCCGGTCCGCACCCCGTTGCCCCCTGCGTCGAACCCACGGCCCACAGCCGCTTCGTGTGCCGATCAGCCGGCGGCCGAATCTACCGGACGGCGGGCGGGCGGGCCGAGTACCCGGCTGACACGACAGGTTCCGGCAGCGGGCCCGCTACGACTCCGTTCAGAGGTCGCTGGTACATGGCACGATGTCCACGGCTCTTTGACACCTCAACAGATCGACAAGCAACGTGTGCTCACTCGACGCCACATCGAGCTAGTAAAGAAACAGCAAATCCGCTACATCACCCCAGGTCGCGAAGT # Right flank : ACTTCCGGCAGTAGGTGCCCCACGCCCACAGGGTCCCGGTCCAGATGACAGCGAAGGCCGCAGTGCAGCCGATGCGGGGCTGCCTCTCTCCAGACCGGTCAACGATCCGGTGGCGACGGTGACACGCAGCGTAGAGGTCGAGTCGCCTGTGCCGGGTATACGTCCGACCGCCGGTGAGAGGCCGAGCCCCTGGCGAGGCGGGCGGGTTGTCGCGTGTTCGTCGGGCCGTGTGGGCATGGCTGGCGGTTGCGTTGGATGTCCCGCCAGCCGGTAGCGCGCGCGTGGCCAGGTCGCTCAGACCGTCCTTGAGATGCCGGCGCGGGGCGTCAGCATTGCCCGGATTCCCGGTTGATCTGTAATGAATGATGAGGGCGTGATCTCCAAGGAACGCGCTGTCGCGCTCGTCGAGTCCCTGTTGGCCGAGGAACGGCTGACCTGGGCGGGACCGCTCTACGAGCTGGCCGTCTACAACGTGGAGGAACACGCGGTCGGCTGGGTCG # Questionable array : NO Score: 5.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.54, 5:0, 6:0.25, 7:-0.20, 8:1, 9:0.47, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCACCTGCGGGGGTCAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTCCCCGCGCCCGCGGGGGTCAGCCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-38] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //