Array 1 163997-168588 **** Predicted by CRISPRDetect 2.4 *** >NZ_LNBZ01000004.1 Acinetobacter baumannii strain MRSN4119 MRSN4119_contig00004, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 163997 30 96.7 30 ............................A. TTCCGCAACTCGCTACTTCCCTGATGCAGA 164057 30 96.7 30 .............................G GAAGATTTGCTTATGGCGTTCTGGAAAGAA 164117 30 96.7 30 ............................A. TGCTTAGTAATGCGCAAAAACGGTCATCCA 164177 30 93.3 30 ............................AG CAGAAGAACGCAGAAAAGCGAGAAGCTTAA 164237 30 96.7 30 ............................A. CTTGAAAGGCTTGAGCTTAAAGCTTTTTAC 164297 30 96.7 30 .............................A CAGCTGGCCGCGTATATAACGGCTCAGTAT 164357 30 93.3 30 ............................AC AACTCGATGTTGGGTATGCAGAGAGCCTTG 164417 30 93.3 30 ............................AA ACTTACACTTCTCAGCGTCAAACCATGCGT 164477 30 93.3 30 ............................GA TTACATCCACGAAAAGAGCTTTAATCAGGA 164537 30 96.7 30 .............................G GCAGAACTTTTCATGACGCTCATTCTCTAA 164597 30 96.7 30 ............................A. ACCTATCAACGTTAAACCAACGATTGCCAG 164657 30 93.3 30 ............................GA TGCAGAAGATGTTTTAGAACGTTATGACGA 164717 30 96.7 30 ............................A. TGGGATGTTATGAATATTCGACATTACCAA 164777 30 96.7 30 ............................A. CAAAATAGAGTTGGCCTTCCTGTTTGGCCT 164837 30 100.0 30 .............................. CAAACGCTTCAACCAGCCACGTCTTTGAAG 164897 30 96.7 30 .............................C TTCCGCCAAATTCTAGGAGGTTAACATGCT 164957 30 100.0 30 .............................. GTGCATACTTATTGCCGCCAGCAAGTAAAC 165017 30 96.7 30 .............................C CTTCGGGAGGTTTTCTTTTGGGGTGATCAT 165077 30 93.3 30 ............................AA GTTTCGGCCTAATGGATGCGGTCTTGAAAA 165137 30 93.3 30 ............................AA GGACTATCCGTCCCTTTGCCGTTTTTGTAC 165197 30 93.3 30 ............................AC CCTCGGGTGGTTTTTTATTGAGGTGATCAT 165257 30 93.3 30 ............................AG TGGCGCGTTCAAGCGTGCCATTGAAGCATA 165317 30 93.3 30 ............................CA GAAGTAAGTCTTGCAGATGCACGATCTAAA 165377 30 96.7 30 ............................A. CCGCCGATAAAACCCTTACCCGATACGCCC 165437 30 96.7 30 .............................C AGCTCCCGATTCAACATCCAACAACATGCT 165497 30 100.0 30 .............................. TGAAAGACTTGAACGTGGTCAAGTCCTCCT 165557 30 96.7 30 .............................G TTGCGCTGTTTTTGAACGTGTAATTGGATA 165617 30 93.3 30 ............................CC AAAGCGGTTAAGCCTCCAAGATTTGCATAC 165677 30 96.7 30 ............................A. GGTAATACAATTCAATCTCACTACAAGAAT 165737 30 96.7 30 ............................A. ATATTTTACGTGTTGATTCAACTACGGGTG 165797 30 100.0 30 .............................. TGGGGTAACTGGTGCCTTTAAGTTGTTTTG 165857 30 100.0 30 .............................. CCAAAGTCTTGTTCAATATCTTGTTGTTGA 165917 30 100.0 30 .............................. GCTCATCAATACAGCTACAAGAAAATTTGT 165977 30 93.3 30 ............................AG CATAAGCATAAAAATTATGTGTGAATATCA 166037 30 93.3 30 ............................AA TATGCAACAATAGGAAATTGCTCAGCATCT 166097 30 93.3 30 ............................AG TTACATCATTGCTTTTAGTCTTTTCTATCT 166157 30 93.3 30 ............................GC ATAGGCATTTACTCCCGCTGTGAGTGAAGG 166217 30 96.7 30 ............................A. CTGCAAGACCACTGATAGTTGTTGAGAATC 166277 30 96.7 30 .............................G TGGCGTAGCGTTTCCAAAGTTGCCCATTGG 166337 30 93.3 30 ............................CC AAGCGTGACCAACTCACCAGTTGTCACAGG 166397 30 100.0 30 .............................. TTGAAACTTATAGGCTTGGCTTGGGTTATC 166457 30 96.7 30 .............................G AAAGGGATTTAAAAGCAGTTACATAAAATT 166517 30 96.7 30 .............................G AATTGGATTTCGTAAATCATTGAGCAAGTT 166577 30 93.3 30 ............................AG CATCAAGTAGATCAGCAGTTACCTGTTCAG 166637 30 100.0 30 .............................. CTGTATTAGTGGCCTTCATGTGCATTAAAA 166697 30 96.7 30 ............................A. ACATGCCCACGTTGAAAATCGGGTACCAGT 166757 30 96.7 30 ............................G. ATTAAAACTGCTTATAAACTTTCTTAAATC 166817 30 100.0 30 .............................. GAAAAAAAGCATCATATTGTTCGGGGCAGG 166877 30 96.7 30 ............................A. TTTTTCTGTTAACTCTAAAATACCCTTCCG 166937 30 96.7 30 .............................A AAAGTAGAGAGTGGCGGTGATTCACTAAGA 166997 30 96.7 30 ............................G. TGTCTGATCCGACAATTTGGCTGAGTACGT 167057 30 100.0 30 .............................. GTACAACAATATGACCCGTATCGATGTAAC 167117 30 93.3 30 ............................AA CAATTGCCTGAGTGGTATGAGCCACCAGTA 167177 30 100.0 30 .............................. TGATAGCTAAAGTAGAAATCAAAGTCGCAA 167237 30 100.0 30 .............................. TTATTGCTGGGAATGAAACATCAAAGCAAA 167297 30 100.0 30 .............................. CTCATCGTGAAGGTTTTGCAAATATGCCTT 167357 30 96.7 30 .............................G TCCGAAATTCAGATGGTGAAGTGACATATG 167417 30 100.0 30 .............................. CAACCTACGCAAGTATTATGGGAACTATTT 167477 30 96.7 31 ............................G. CTTTATCAGTTACGATGGCATGAGTTTTTGT 167538 30 96.7 30 ............................A. ATCTCGCAGATTTGGACAAGGTCACGAATA 167598 30 100.0 30 .............................. CAACTGTGTAACCAGATTTCGCTTTAAAAG 167658 30 96.7 30 ............................A. CAATGTAATGCTCAGGCGATGCCTTATCAT 167718 30 100.0 30 .............................. GGACAAAGATTATGACTGAGAAAGACGAGA 167778 30 100.0 30 .............................. GGATGTGCAATTTGGTCAAGATGTGGGGAG 167838 30 93.3 30 ............................CG AACACGACTTGAACCAAAGTTAGAAAAATA 167898 30 93.3 30 ............................CA ACTAAAAGCTATTTATGGGGGTAAAAATTT 167958 30 96.7 30 .............................G TCATTGGCCGGCCATTCACAACCCCGATAA 168018 30 93.3 31 ............................CC AAAAAATGAGGAAATTGGACAATATCCAACA 168079 30 96.7 30 .............................G TTGAACGAGTTATTCATAAGTGCCCGAAAT 168139 30 93.3 30 ............................AG CGGAAATCTTTTCAAGTGCGTAGGGGATAA 168199 30 100.0 30 .............................. CTCCAAGTAAAGAATAAAACAATATACCGC 168259 30 96.7 30 .............................C AAGGCGATCCACCTCCCGTCACAGTCATTT 168319 30 93.3 30 ...........T.C................ TGCTAAAAGGATTTATGCTTTAAAATACTT 168379 30 86.7 30 .......A.....C...T..........G. TGGCGTACGGATAACGGAAGAAAGCATAAG 168439 30 86.7 30 .......A.........T..........AA ATAACCACGGTTGTGGTAAGTCACTTTTAC 168499 30 80.0 30 .......A.A.....T.T..........GC GTTCAGGTTGAGGAGATGAAGTGATGTGAT 168559 30 70.0 0 ...T...A...T.....T..C...AGCG.. | ========== ====== ====== ====== ============================== =============================== ================== 77 30 95.6 30 GTTCATGGCGGCATACGCCATTTAGAAATT # Left flank : GGCAAATGGCTAGAACGATTCATTGATTATGTACATATCACTCAACCGAGAGAAGTGCCTCGAGCCAAGATTACAGGTTATGCGCATTACTATCGAGTTAATCATAGAATGAGTGTTGAGGAACGTATAGTTCATCAAGCACAACGTCGTAATATTTCTTTGGATCAGGCTAGACAGCATTTTAAACAATATGTTGAGCAACCAGTGGTTGAACCATACGTAAGTTTAAAAAGTCTCAGTGCAAAACGTGAGGAAAATGTAGATCGCCCCTATCGTTTATATATTGGTAAATCACTTGTTGATGAGGCAAGGGATGGGATGTTTGGAACTTATGGACTAAGCCGAATGACAACAGTCCCAGAGTTTTGACCCAATATTTTTTCTATTCTTTAACAGCTCAATAAAATCAATAAGTTACAATAGGTCTTTTTTGATTGGGTAAAATGCCAAAATCCATGATAAACACTTGTTGTAACTTATATTTTTACTATAATTTTATA # Right flank : TAAGATAAAAAAACAAATGATCACTGCTTAGTATTCTTTATCTTTAAATTTTAAAGAAGAAAATATATTCTGAGCTCAAGATATTTAGTGGTGAAATTTTTATGCGCGGTTTATACCTCATTACCAATGATGACCCAATCCAATTATTATTAGAAAAATTAGACGCCGCACTCGCAACCCGTCAAATCGCAATTTTACAGTACCGCCGTAAAAAAGTAGACAAAGCCGACCAACCTGCTGAAGTTGAACAGATCAAACAATTATGTGAAAAATATCAGGTTCCTTTTGTCATTAATGATGACCTAAAACTGGCTGCTCAGTTTGGTTTAGGTGTGCATTTAGGTCAAAGCGATGGCGAAATCACCGATGCAAAATCGCAGTTACCAGAAGGTGTTATTATTGGCCGTACTTGCTTAAACTCATTAGAACTTGCCCAAAAAGCTATTGCCGATGGTGCAACTTATGTTGCCTTTGGTGCGGTTTATGCAACTGCCACTAAA # Questionable array : NO Score: 5.32 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.28, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCATGGCGGCATACGCCATTTAGAAATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCATGGCGGCATACGCCATTTAGAAATT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.10,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-20] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //