Array 1 57231-58219 **** Predicted by CRISPRDetect 2.4 *** >NZ_RXDG01000023.1 Pseudomonas aeruginosa strain AMT0047-125 IPC564_23.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 57231 28 100.0 32 ............................ ACATCCGATTCACCGGATACAGCTGGTTTTCA 57291 28 100.0 32 ............................ TGAGTTCTGAGACGATCGGCCTCGGCGATCCC 57351 28 100.0 33 ............................ ATGTCGTGGTGCTCCTTGGAGCAGGGGCGCCAA 57412 28 100.0 32 ............................ TCGATCAGACGACCGTAGGTGCGCAGGCCTTC 57472 28 100.0 32 ............................ ACTACCGACAACGCCAGGGCGTAAAGCTGCGG 57532 28 100.0 32 ............................ AACTGGTGTTCTTCGGGAACCAAGTCGGCAAC 57592 28 100.0 32 ............................ AATGCCGAACCGCTGCAGCCAGGTATCGGGCC 57652 28 100.0 32 ............................ AGGGGCATTTCCTGATCATCCGAGGAGATCGC 57712 28 100.0 32 ............................ ACGACGGCCGCCTTGCGGATCTCGGCAGCGGA 57772 28 100.0 32 ............................ TCCTGGTCGTCCTGCGCTCGTACGGCCATGGC 57832 28 100.0 32 ............................ ACACCCTAGGCTTCGCATAATGTGCAGACGTT 57892 28 100.0 32 ............................ AACATCGACGGGTCGAACTGCTCCGGCACCTG 57952 28 100.0 32 ............................ AGAAGGCCGGGGTCCGTGTGTGGCGCATTGAC 58012 28 100.0 32 ............................ AATCCAGGTGACGTCGTGCATCTGGGACTCGT 58072 28 100.0 32 ............................ TTACCTTTAAAAGGCTTTAAAAGGCCTTTTAG 58132 28 92.9 32 .....................A..A... TGTCCCGAAGTTCATAAGCGGGCTTCGGGCGA 58192 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================= ================== 17 28 98.1 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAGAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGGACCTCGTTGCGGACATGCCGATGAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGCTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGACGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 67073-66744 **** Predicted by CRISPRDetect 2.4 *** >NZ_RXDG01000023.1 Pseudomonas aeruginosa strain AMT0047-125 IPC564_23.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 67072 28 96.4 32 A........................... ATGCAGATCAAGCCGGAGGACTACCTCAAGAC 67012 28 100.0 32 ............................ ATCGACGCCAGCACCTGGCAGCACGACTTCAC 66952 28 100.0 32 ............................ ATGTAGTAGCGGTAGCCCATCGTTTGCGCTTT 66892 28 100.0 33 ............................ AACACAGATCGGCGTGCCCGTGCGAAGAATGCC 66831 28 100.0 32 ............................ AGCCTGCCGGCCCAGGACATGCAAAACCAGGC 66771 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 6 28 99.4 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : TTCACCCAACGGCGCAAGGCCGAATCCACCACCCCCAGCGAACGGCAGGCGTCGATATGGCTGTAGCCTTGGTCCAACACCAGGGCCGCGGCCTCTCGTTTGAACTCGGCGGAAAACGTACGTCGTTGCTTGCTCATCAGACACCTCTCTCACGGCGAGGATTNGCGGTAGCCTTTTTTAATAACGCTTTCTCCCGCTCCAACCGGTTGATCCGGGCTTCCAGCTCCTGGATCTTTTGCTGCTCAGGCGTCAACGCCTTGCTCTTCGGGGTCACACCCTGGCGCTCCGCCTCGAGCTGCTTCACCCAACGGCGCAAGGCCGAATCCACCACCCCCAGCGAACGGCAGGCGTCGATATGGCTGTAGCCTTGGTCCAACACCAGGGCCGCGGCCTCTCGTTTGAACTCGGCGGAAAACGTACGTCGTTGCTTGCTCATCAGACACCTCTCTCACGGCGAGGATTCTCGCCTAAATTGGTGTCCGGGATCAGTAGACCACTAC # Right flank : CTCGAACCCACCTCGGCCACAACAGCCGCCGGGGTCGCTGCCGTCTAGGCAGAACCGCCCTCCCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACATTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAACATGGACGACATTTCTCCCAGCGAACTGAAGTCGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACTTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATTG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,9] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.10,-8.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: R [30.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 125-1472 **** Predicted by CRISPRDetect 2.4 *** >NZ_RXDG01000003.1 Pseudomonas aeruginosa strain AMT0047-125 IPC564_3.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 125 28 100.0 32 ............................ AGTCCGACCTGGCCGAGAACTTCTACAACCGC 185 28 100.0 32 ............................ TTGTTGTCCAAGGTGTTGTCGCTGTGCTTCCG 245 28 100.0 32 ............................ TTGCCGTATGAGGTGTATCGCCCGTTGAGGTC 305 28 100.0 32 ............................ ATCGTGGACCGCATCGGCACCCGCGTTCTGCG 365 28 100.0 32 ............................ TGCTCAAAGCCAGGGCGAACTAGTCGGCTTAG 425 28 100.0 32 ............................ TGCGTACTCCGGTACATGCCGAAGTACTTCTT 485 28 100.0 32 ............................ TATGATCATGCCCCGTCCTCCGGCTCCAATAC 545 28 96.4 32 ..............G............. TGAAGGCCAACCCGCAAGTCAGCAAGGGCATC 605 28 100.0 32 ............................ AGGTTCGTGGCGGACCGGAAAGACCTCAACCG 665 28 100.0 32 ............................ CTGGACGCAAGCAAGATCGTAGGGCGCTGCCC 725 28 100.0 32 ............................ ACCACCAAGATGGTCCAGGCCGTGCGTTCGAT 785 28 100.0 32 ............................ GGCCAACCAGATCGTCTACACCGCCAACGTGA 845 28 100.0 32 ............................ TTGATGGGTTCGTACTCAGGCCCGGAAAACTC 905 28 100.0 32 ............................ TTCCACCCCGAGCAGTTCGATGTGCTCGAGGC 965 28 100.0 32 ............................ ATCAAGGTCAACCTGGGCTCCGGCGCCGGCGG 1025 28 100.0 32 ............................ AGGTCTTCGAACTCGAACAGCTTCGCGAACTG 1085 28 100.0 32 ............................ TCCAATGCGGCGCGTACTGCCCGCGCCTGCTT 1145 28 100.0 32 ............................ AATGCGTGTCGAGCGTTGGTGCTGGGATGCCG 1205 28 100.0 32 ............................ AACCAGCGTGTCGACGCCGAGGCCCAGGCACG 1265 28 100.0 32 ............................ CTCGATGACGCATATCGCGAGGCGCTGGCCAA 1325 28 100.0 32 ............................ TGTGTACCCCTGCGCGTGGAGCGCGGGGCGAC 1385 28 100.0 32 ............................ GTCATGGGCGAGCTCTACGCCAACCCGCAAGC 1445 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 23 28 99.8 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : TTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCTAG # Right flank : ACTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATGCACGAAGTGAGGTTTGCCCTCCAAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGGCCAAGGCAGGCACAGAAAACAGCTTGAGCAGCAAACATGAAGCCCGCTCGAACGTCCCGTAGGGCGAATACCGCCACAGGCGGTATCCGCCGATGCTCTGGAGAGCCGGCGGATAACCGCAAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.41 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 1323-335 **** Predicted by CRISPRDetect 2.4 *** >NZ_RXDG01000009.1 Pseudomonas aeruginosa strain AMT0047-125 IPC564_9.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1322 28 100.0 32 ............................ TCAGGTTGTTGTTTCCGAGCGGCGTGCTGGAT 1262 28 100.0 32 ............................ AGTTCCAGCATGACCGGCACGTCGCGGATCAG 1202 28 100.0 32 ............................ GCTGGCTGGGATTACAGCGGTCTGACCAAGGA 1142 28 100.0 32 ............................ GCGTTGTGGATGGCGCAATCGTTGAGACGCCC 1082 28 100.0 32 ............................ TATGACAAGGAAACCATTGTCCTCGTCCTCAA 1022 28 100.0 32 ............................ TGAAGAACACGCTTGCCGGCGAGTTTTCCGGG 962 28 100.0 32 ............................ TTCGCAAGAGGGGCATCGAGGAAGTCAACGAA 902 28 100.0 32 ............................ AGATAGCGGGCGCTTCGTCATTGGCTCCGTTG 842 28 100.0 32 ............................ ATCACCCTGTCGATCAGGTCGATCATCCCATC 782 28 100.0 32 ............................ GGCTGGTGTGCCCCATAGCTGCCAGCCAAGGT 722 28 100.0 32 ............................ GCGCAGGCCCGATGCCTCGAAGCGCTGCACCG 662 28 100.0 32 ............................ ACATGCGTAGCGTGCAACACCGCTCGCGACGC 602 28 100.0 32 ............................ TTGAAGGTCGCCTTGATGCCTTCTTTGATCGC 542 28 100.0 32 ............................ GCGCAGTAGTGCGTCTCGCGTGTGATGCCGTG 482 28 100.0 32 ............................ AGCTAGAGAGCTAAATCCTGCGTGGAACAGGA 422 28 100.0 32 ............................ ACGTCGAGGGGAAGTGGGATACGCCTACGATC 362 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 17 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCRTGAGGTCGGCYATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTRCCCGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGRGGCATCGCCCATCACAYGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGRAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGYAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGYGCTA # Right flank : ATGGGCGATCGAGCACGGCATCACGCGCGAGACGTTCTGTAGTGGTCAACCCATCCCGGACAGTGGGTTGAGTTTTTCTTCGGCCACTGCAGGTGGTAACCCGTCGTTGAATTGATGCGGCCTGATCCAGTTGTAGCGGTGCATCAAGTAATGACTGATGTCCCGTTGGGCCTCCTGCGCCGTCAGGTAACCCGTTGACGGGACCCACTCCGACTTCAGACTGCGGAACAGGCGCTCCATCGGCGAGTTATCCCAGCAATTCCCTCGGCGACTCATGCTCTGCTGCATCCGATAGCGCCAGAGCCGTTGCCGAAACAGGCGGCTGGCGTACTGGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [36.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //