Array 1 149-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMFJ01000114.1 Escherichia coli strain MOD1-EC6003 MOD1-EC6003_114_length_8810_cov_5.12413, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 148 29 100.0 32 ............................. CGACAAAATTCTCAAAACTCGATCAGGAAAAT 87 29 100.0 32 ............................. CCACCGTTTTCGCCCACCAGGGCGCGCAACCC 26 26 86.2 0 .....................G....--- | ========== ====== ====== ====== ============================= ================================ ================== 3 29 95.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAACAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAATCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAGGTTATGTGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : A # Questionable array : NO Score: 5.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.77, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1666-51 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMFJ01000261.1 Escherichia coli strain MOD1-EC6003 MOD1-EC6003_269_length_1713_cov_5.05012, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1665 29 100.0 32 ............................. GCATTGACGCTTTAAACGACGACGGACGCCAC 1604 29 100.0 32 ............................. AAAACAGCCTTTAGATTAGTACCTGACGACCG 1543 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 1482 29 100.0 32 ............................. ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 1421 29 96.6 32 ............................T AGATCGCGCCACGAGGAAACGAATATGAACGG 1360 29 100.0 32 ............................. TGCCGCCAGGCCAGCGACACATCAGACAACTG 1299 29 100.0 32 ............................. GTCTGTGATGGCCTGCTCGTGAGTCCGCGGCG 1238 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 1177 29 100.0 32 ............................. TGCGCCGTAGCGTGTCCACCTATTGTAGTAAA 1116 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 1055 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 994 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 933 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 872 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 811 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 750 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 689 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACAA 628 29 96.6 32 ...........................A. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 567 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 506 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 445 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 384 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 323 29 100.0 32 ............................. CCTAGCCCGATTATCGGCATGAGCGATGCGGA 262 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 201 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 140 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 79 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 27 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAG # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 49-1096 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMFJ01000011.1 Escherichia coli strain MOD1-EC6003 MOD1-EC6003_11_length_87510_cov_35.1034, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 49 29 100.0 32 ............................. AAATTAATTTTGAAACGGGTGTTGATGGTGAG 110 29 100.0 32 ............................. CCTCGCTGTAAATTCCAAAAACGATCTCTATA 171 29 100.0 32 ............................. ACCTGAACGAAACGCAAAATAGTTTCTTTATG 232 29 100.0 32 ............................. TTCGTTTTTCGCAGCATTAACTTTTTGCCGCG 293 29 96.6 32 ............................T TGATCCGCGACCGCCAGATGGCGCAGCCTGTC 354 29 100.0 32 ............................. GTGCGCCAGCTATAAAAAACTCACCATCAACA 415 29 86.2 12 ...............C.A.C.....G... CAAACAGAGCCG G [439] Deletion [456] 457 29 100.0 32 ............................. ATCCCCTGCGTCCTCTTTTGAATAATCGCGGC 518 29 100.0 32 ............................. CGAGCGCCGTTGGCTACTGGCGTAGCCGTGGA 579 29 100.0 32 ............................. CGCCGCGCGGCGGGTGAGTCCGTGTTTTATAC 640 29 100.0 32 ............................. CCATGACTATAAAAGCTTATATTTTGATAAAT 701 29 100.0 32 ............................. TGGCTGTGGCTTTGTTTTTTGCTCTGATATAT 762 29 100.0 32 ............................. GCGTCCGTCAAAGAGGAAGCCAAAGCCATGCA 823 29 100.0 32 ............................. TCGGTTTGCGCGTATTGTTGTTCGGGGTCTAT 884 29 100.0 33 ............................. TAGGTAAATCACAGCTATTTGATAAGGGCGTGT 946 29 100.0 32 ............................. AGTCGAAATGAGGCGCGTGTTCTGGAGGATAT 1007 29 96.6 32 ............................T GTGTTTGCGGCATTAACGCTCACCAGCATTTC 1068 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================= ================== 18 29 98.7 31 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGAG # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 26646-28016 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMFJ01000011.1 Escherichia coli strain MOD1-EC6003 MOD1-EC6003_11_length_87510_cov_35.1034, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 26646 29 100.0 32 ............................. GCCGGGTTAAGAAGGTGTATGGATGGCCCGGA 26707 29 100.0 32 ............................. GGTTACGCCTGCACAGAGTACAATGCGTGGGG 26768 29 100.0 32 ............................. CGGTGATGCGCGGTATCGATCAGCATCCGGCT 26829 29 100.0 32 ............................. GCTCATTTCAAATGGTCAGGTCCGGTGGTTTT 26890 29 96.6 32 ............................C TGATCACATCATGTTTATTCGCGGTCGTATTG 26951 29 100.0 32 ............................. TACTGGAAAAAGCTGGCGACGGTGAGCGCAGC 27012 29 100.0 32 ............................. ATCCGCCGCCGGTTAACGCTGGACCAGTTCCG 27073 29 100.0 32 ............................. GGCGAGTCCGTCAGCGGTGCGCCGCTGCAACA 27134 29 100.0 32 ............................. ATTTCATCAAAGCATTAAGGGATGGAATAAAG 27195 29 100.0 32 ............................. TCATGAATATGGGGAAAACGAACAATCTGTTT 27256 29 100.0 32 ............................. ATGACCATTGGTGAACGCATCCGCTTTCGCCG 27317 29 100.0 32 ............................. CCGACGTGGGGATTTACTGCCACGCATAAAAA 27378 29 100.0 32 ............................. TACAGTTTCCATAAATTCACCTCGTTTATATA 27439 29 100.0 32 ............................. AGGACGAAACGACCGGAAAACTGGCGACGGGC 27500 29 100.0 32 ............................. CGTCCGCGGCTGCAACTGATGCCGGGGCTTAT 27561 29 100.0 32 ............................. AACCTTGTCGGGTCGCCCGTGCGTCATGATGA 27622 29 100.0 32 ............................. AGTTCCCACAAACCTGGGTGCATCTCGCGTTC 27683 29 100.0 32 ............................. ACTGCAAAGTTCTTCACGCTGGTTTTTATGCA 27744 29 100.0 32 ............................. CCAGCCGAAACAACGCCAGCAAAATCGACCGC 27805 29 100.0 32 ............................. GGATATAGAGCGGGTACTCGAGCGAAGCGGGG 27866 29 100.0 32 ............................. CCAGGACAGGCCGTGACGGTTGCCATTGAGTC 27927 29 100.0 32 ............................. TTTTTGTTCTCTTCAAAACGCCGAACAACCAA 27988 29 93.1 0 ............T.....A.......... | ========== ====== ====== ====== ============================= ================================ ================== 23 29 99.6 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGTGCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGAAGATGCACAGCCTGTTGCCATTCCGCTTCCCGTTTCTCTGGGAGATGCCGGACATCGGAGTAGCTGAGATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTATATGTAGGTGATGTATCCGCAAAAATTCGTGAAATGATCTGGGAACAAATAGCTGGACTGGCGGAAGAAGGCAATGTAGTGATGGCATGGGCAACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACCCCGGTAGATTTGGATGGTTTAAGGTTGGTATCTTTTTTACCTGTTTGAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGA # Right flank : GGACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACTCCCAACTCCCATTTTCATACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCTGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCACTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //