Array 1 24331-24627 **** Predicted by CRISPRDetect 2.4 *** >NZ_QKXK01000059.1 Staphylococcus felis strain F2 k127_140, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 24331 36 88.9 29 ..........CGC......A................ ATAAGTATGTGACTAAGAAAAGAGGAATA 24396 36 97.2 29 A................................... TCTCGTGATGGTGAGGCCACTGTTTTGAG 24461 36 100.0 30 .................................... TATTTTGTATTAATTCTTTACTACTGTTGT 24527 36 100.0 29 .................................... AAGCGCGACGGATTACCACCAGTGCCAGG 24592 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 5 36 97.2 30 GTTTTAGAACTATGATTATTTAGAAAGAAGTAAAAC # Left flank : AGTGAAATTAACAAAAGGAAATTATTTATCGATTTACTTAAAGACGATGATAAAGAAAATGTATTACTTATATTGTATCCAGAAGCATTTTTGGGGCTCAAAGATATTCAAAGATTTATACAATTGATTAAAAGTTATCAACTCACAACCATTATAATTACAAATCATCCATCTATTATCATTGAGGAAGAAAATGTTTATTTATGCAAAAGCAATAAAGAGTGTCACTCAATCAAAGATATAAGGGAAGATCTAGAAATTCTTATGCCACAAGAAACAATTAATGACAAAACGGTTAGAATGATTGCTTATCATGAATTCATAGGTACAGATTTAAAAGAACTAGCACGATACTTTGAGTTTATTAATGATTACAATTAAGATATAATTGAATTTACTATGATAAATAAAAAACAACAAGCTTTATTCAATGTTTAACTTCTTAACTAAAAAGCTAAAACCTCAAAAATGGTAAAAACTATAGTGTGTATTTTTGAATT # Right flank : | # Questionable array : NO Score: 5.92 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAACTATGATTATTTAGAAAGAAGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: F [matched GTTTTAGCACTATGTTTATTTAGAAAGAAGTAAAAC with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.20,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.41 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 5515-4807 **** Predicted by CRISPRDetect 2.4 *** >NZ_QKXK01000003.1 Staphylococcus felis strain F2 k127_13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================ ================== 5514 36 88.9 30 A...........C..A.........G.......... TATAATAGTAATATTAATAAAATACCTAAG 5448 36 91.7 30 A...........C............G.......... ACGACACATTCCACATCTACAACAGAATAG 5382 36 91.7 29 T...........C............G.......... GTCTGTTGCGTAGATACCATGCTTGCGAA 5317 36 94.4 29 ............C............G.......... AAAGTTGGGGGAATAACTCTCAAACGAAT 5252 36 94.4 44 ............C............G.......... AGAAAGAAGTAAAACAGCAATCGCTAATCTGTTAGACAACCAGG 5172 36 100.0 30 .................................... CGCACCTCTAAAGATAATACGGTTTCCACG 5106 36 100.0 30 .................................... CGCACCTCTAAAGATAATACGGTTTCCACG 5040 36 100.0 30 .................................... AGTTTTTCTGTTGTGGCATTCATTGCATAA 4974 36 100.0 30 .................................... CTAGGAGGAATTAAATATGCCAACGACTGA 4908 36 100.0 30 .................................... ATGATGTACGTACCATGTACATTGTCCCCA 4842 36 88.9 0 ..............T..........T......T.C. | ========== ====== ====== ====== ==================================== ============================================ ================== 11 36 95.5 31 GTTTTAGAACTATGATTATTTAGAAAGAAGTAAAAC # Left flank : CATTACATACAAATAATAAAAACAGTAGTATTTTGAGCATCGTATATTTAGGATAAATGACAACCGTAACTCAATGACTCACGAGTAGTATAA # Right flank : ATTTTTTCTGAATTTTTAGATATAATGATGATACTAGAATGACCAATTGATAATCAATAATCGAGAAATCTTAATGATACATGTCTTTTCTTTTCATTGATATAATGAAATGATATAGTCAAATATTTTTTAGAGAAGATTGTTTTATTTTATTAAGAAAGGGGAAGTTCGATGAAGTCTATTATTGCAAAACACGCTTTTAAATTGTCAGATGGGAATTTATTTGAAAAAGTGACACGGGAAAAACCAATAGTGAATGCTCATGAAGTAGGAATAGCTGTTCATGCATCAGGTGTGAATCCGATTGATACAAAGACGCGTCAAACACCACTTCAGACTGAAGCACGTGTATTAGGATATGAAGGAGCAGGTGTTGTTGAAGCAGTAGGTGAAGATGTGACACGTTTTAAAGTAGGGGATCGTGTGATGTTTGTCGGTGCACCTAAATGGGAAGGGTCGAATCAAACTTATCAAGTATTAGATGAAGCGTATATGACGCA # Questionable array : NO Score: 5.83 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.79, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAACTATGATTATTTAGAAAGAAGTAAAAC # Alternate repeat : TTTTAGAACTACGATTATTTAGAAGGAAGTAAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: R [matched GTTTTAGCACTATGTTTATTTAGAAAGAAGTAAAAC with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //