Array 1 1485-1693 **** Predicted by CRISPRDetect 2.4 *** >NZ_MBJU01000004.1 Photorhabdus temperata strain Hm contig_100, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1485 28 100.0 32 ............................ TGATGAATACGAAGATGAGGTTACAGATGAGG 1545 28 100.0 32 ............................ TTGAGTTTCCGCACTTAGATCGGTGAAGTCAG 1605 28 100.0 33 ............................ AAATGGAACGCCAGTCGCTACTGCTGGCTATAT 1666 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 4 28 100.0 33 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TTTCCTTTGTTATTGGTTTATTGTTAGGATAAAATGCTTAAATGACTGTATTTATAAGATCCGTAAAGAAGATATTTTTTCTAATAAATTTAAATGGTTTTTTCGGGAATACATCGTGAGAGTTTAATAAATGCTAACTTTAATTTTATCTTGCTTTGGTAAAAATGATTACATTAAAAAATTTAGAAAAAAGATAAACGGAAATAAATGTGTATATAGCCGACATCTTATTGTTGTATAAGTTATTTTTTCCTCGTTCCAATGATTAAAAAGCTTGCATAGAAATCCACTTTCAATGTCTACCAAGTTTTACCTGGGTTTACATTTTTATTGCTAAGAAGGATGGTGTCTCCTTGGCGCCTTGGCTTTGACCCTTTTTTATCGGTAAATTATAATTCATTGATTTTAAATAGTGTTTTATCTCTTCTGTAAAAAAGGGTTTTTTGACTTTTTATAACTATACTTTTTAATAGTCAATAGGTTAAAGTTAGTCTGTAACA # Right flank : A # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [78.3-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 5875-6561 **** Predicted by CRISPRDetect 2.4 *** >NZ_MBJU01000066.1 Photorhabdus temperata strain Hm contig_21, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 5875 28 100.0 31 ............................ GCGCAAAATGGGCACACTCTTAGATATATGG 5934 28 100.0 32 ............................ AAGCCGACTTATTGAAACTGGGCTATTCCGAT 5994 28 100.0 32 ............................ CATACAAAGTGGCTGTGCAAGTACCATATCGT 6054 28 100.0 32 ............................ TTAATAACCCACGGAGATATATCGCTATACGG 6114 28 100.0 32 ............................ ATACGAACTGGAGAAAGCAGCAAGTACATTCA 6174 28 100.0 32 ............................ CTACATCAAGCGGGTTCACACTGTTCATTAAA 6234 28 100.0 32 ............................ TGCTCATACTATCAATATTCCTGAGCGTTCAT 6294 28 100.0 32 ............................ ATAGTGAGTTAAGCGCCGAGAAAGCCAGAAAA 6354 28 100.0 32 ............................ AGATGAACTAGAGGAAACATTGTATGAAAGTT 6414 28 100.0 32 ............................ GTGGGTTATTAAGGCCGCTGAACAATGCAGGA 6474 28 100.0 32 ............................ GTTAGCCATCCCCCATTAAATTCATCAGGAAT 6534 28 82.1 0 ......................GC.CGC | ========== ====== ====== ====== ============================ ================================ ================== 12 28 98.5 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : AAGCGTTGCAGGATTTACAGGCGTTACCTTGGTTAAAAGGGCTCAGGGACTATACTGAAATGGTTGATATCCAGCCAGTACCTAAAAACACTCGATATCGTTGTGTTAGCCGGGTACAGGTTAAAAGTAACGCAGAGCGGCTTCGTCGTCGTTCGGTTAAAAAGGGCTGGCTAACCGAGGAACAAGCTCGGCAATGCATCCCAATAAGCAAAGAACAACGTACTGATTTACCGTTTCTGAACCTCAAAAGCCTGTCATCAGGACAAAGCTTTCCGTTGTTTGTTGAACAAGGACCAATAGAAGACAGACCAACACAAGGAGTTTTTAGTTCTTATGGATTAAGTGCGTCAGCTACCATCCCCTGGTTTTGACCCTTTTTTAGCGGTTAATTATAACCTTTTGATTTATTTAAGAGATTAGCCGCTGCTTATAAAAAGGGTTTTTCCGCTTTTTTTAACTATGCTCTTTAATAATCAGTAGATTAAAGCTAATATCTAACA # Right flank : CTCAATTGAGCGCGCTAAAAAATAAGCTAATCTTGTTTTCTAATATGAGTTATTTCTTATGGTTTTGAGCATATTCTTCACTGTTAACCCATTGATGGTCTTTCTCCCAGGTAAATAGCCACTTGCGAGTTGGTCCTGCCATGACATTGAGATAGTAGTTGTTATAACCAGCAATGGTTGCCACTGGGTGATAGCCCTTGGGAACAATGACCACATCTTTGTTATAAACCGCCATTGATTCATCCAGTGAACAGTTATCGGTATAGACTCGTTGCATACAAAATCCCTGCGCTGGGTTCAGGCGATGGTAATAGGTTTCCTCCAGATAGGTTTCCTGTGGTTCATTGTCAGTATCGTGTTTGTGGCTGGGATAGGAGCTGGTACAGCCCTCATCGGTAAAAACTTCGACCACTAATAAGCTATCAGCAGGTTTGTTATCCGGCAGGATATTGTGAACATAACGTTGGTTGAAACCGCTCCCGCGTTTTTCTGCGTCAATA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 10651-9721 **** Predicted by CRISPRDetect 2.4 *** >NZ_MBJU01000099.1 Photorhabdus temperata strain Hm contig_51, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 10650 28 100.0 32 ............................ TTTTCGCTTACATATTGGGCATTCACCCTGAT 10590 28 100.0 32 ............................ TGCACCACTAACCGGTGCAGCATTTGCACCAG 10530 28 100.0 32 ............................ GTAAATTAGCAGTCAAGCACATATCATATTTC 10470 28 100.0 32 ............................ ATCCGGCGTTTACCGATATCGACATCAATAGA 10410 28 100.0 32 ............................ TCCCAAATCCAGGTCTGATAACCGTAGATGCT 10350 28 100.0 32 ............................ TGGTGAAAGAGAGCGGTTAGTTTTACCTTCCG 10290 28 100.0 32 ............................ ATACCAAAGTGCTGTGCTGCTTCTGACAGGGA 10230 28 100.0 33 ............................ CGTTCCCATATCCAGCGCTTTTATTTTTTCCTC 10169 28 100.0 32 ............................ TTATTATAGGTTTTACTGGTAATCAGATTTCG 10109 28 100.0 32 ............................ ATTGCAAAAATTCAGCTGTTGTCCACATTCCT 10049 28 100.0 32 ............................ AGTCCGGGGCGCTGTCATCAAGGGGTAGTAGC 9989 28 100.0 32 ............................ ACGAACACTATCAATAATGTAGAGATTGCCAT 9929 28 100.0 32 ............................ CCACGAGATTACGGCGGATTGCTGACGACAAT 9869 28 100.0 33 ............................ AACGATACCCGCATTCGTATGTCAGCAGGTCGC 9808 28 100.0 32 ............................ TGCGGATAGCAGAGATACCGGGCAAATAGAAC 9748 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 16 28 100.0 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AGCGTCAGCAGGGTATGCATCGGATTATGGCTAACTATATGCCTGATAATCATCGTAGTGGTAAATTATTGGAACGATTGGGTTTTGAGCGTGAAGGATATGCAAAGAAATATCTGATGATAAATGGAATTTGGCAGGATCATGTATTAACCGCACTGACAGATGAAAAATGGAATGGAAAAAGCTGATGATCAGATTGTACTGCTAGATAAACAAGAAACTGCCTAGTTACAAAGTTATAGCGGAACTTAAATTACAGTCTCGTCGTAAGCCCCATCATGGGGCTTTTGCTCATTAATGAACAAACAGATGTAGAGAGAAGGAGGGAAATGTAACTTGAAAGATGGTGTTTCCTCATACCTTATTTTTGACCCTTTTTTCTCAGTTAATTATAATTTATTGATTTATTTAAGAGATTAGCATCTGTTAAAAAAAAGGGTTTTTCTCCTTTGTGTCATTTTGCTCTTTAATAATCAAGAGATTAAAGTTAGTATTCAACA # Right flank : TTAGAAAGATCGATTTATAATACCCTTTTGACGCAAATGGTATTCTCTGACAGACTGCAATGCATAGGAGCTATCTATATAGCAGACTTACCAATGGAGGCAACCATGAGTCATACCCGTTACGAAACTGATGTGGTCGCTTGGGCGAATGAGCAAGCAGCATTATTGCGTGCAGGTAAATTCTCTGAGATCGATATAGTTAATATTGCCGAGGAGATTGAGGACGTGGGCAAGAGTGAAAAACGTGAACTGGCAAGTCGTATGGCGGTTTTGTTGGCCCATCTTCTGAAATGGCAATTCCAGCCTGGCCGTCGTGGTTCAAGCTGGCAACGAACTATCAGGGAACAGAGAAAAGCACTGGAATTGCATATAAAAGAGACACTTAGCCTGAAAAGTACCATTGCTGATGAAAACTGGTTTGCTAAAGTTTGGGCTGATGCCGTTTCTTCCGCTGCCGACGAAACAGGGCTGGATATGTTCCCGGATGAATGTATCTGGAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //