Array 1 1045708-1048680 **** Predicted by CRISPRDetect 2.4 *** >NZ_VSWH01000001.1 Chryseobacterium vaccae strain CA7 contig001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== =============================== ================== 1045708 46 83.0 30 TAAAA...A.T.-.................................. TCAGCAAGAGAAATTTAATGATCTTCTGGT 1045784 47 89.4 30 .C......GA..C.......T.......................... ATAGCTAACGAGAAATTATCAGGTGATATG 1045861 47 97.9 30 .C............................................. CTTCCGGGAGCGCTGACGTTAAATAATCGT 1045938 47 100.0 30 ............................................... TCTTTGAGCAGTAGTGCTGCAACAGTTCAA 1046015 47 100.0 30 ............................................... GCCTCAGTATTAGCATCGAAAACAATTTGC 1046092 47 100.0 30 ............................................... TCCAGGGCGGTAGACAACATGGCCGTTGTT 1046169 47 100.0 30 ............................................... TCTTTGAGCAGTAGTGCTGCAACAGTTCAA 1046246 47 100.0 30 ............................................... GCCTCAGTATTAGCATCGAAAACAATTTGC 1046323 47 100.0 30 ............................................... TCCAGGGCGGTAGACAACATGGCCGTTGTT 1046400 47 100.0 30 ............................................... CTGGCCCCAGTTAAAATGGTTCGTCTGAAT 1046477 47 100.0 30 ............................................... AGCATTCCAAAAGGACTGGTAAATAACTAC 1046554 47 100.0 30 ............................................... AGCTTTTAAGTGTACCGATACTGTAGGCGG 1046631 47 100.0 30 ............................................... AAATAGATTTCATTTCATCAGCCGTATCAC 1046708 47 100.0 30 ............................................... GCTGAGTTCACCATTAGCACAAACAGTTCT 1046785 47 100.0 30 ............................................... TGACATAGAATTTCATTATGATTGTACCTG 1046862 47 100.0 30 ............................................... AGAAGCGTCTTGCACCTGCTCAAGCGTTCC 1046939 47 100.0 30 ............................................... TATTTCCGGCTGTTCGCATCCATCGTAATA 1047016 47 100.0 30 ............................................... TTGTCGTCGTGTATTCTGTACCAAATCATA 1047093 47 100.0 30 ............................................... AATAATTCTTCAAACCTTTTCAGAAAACAA 1047170 47 100.0 30 ............................................... AATTCCATTTGGCGAACTCATTATCGATTG 1047247 47 100.0 30 ............................................... AGATATAAAAAAAGCAATGGAAAGCAATGA 1047324 47 100.0 30 ............................................... TTCTTTTTAAACCTCAACGCCTTTTGATAG 1047401 47 100.0 30 ............................................... AATTAAATTCTACTTCAGAGCTTTCTTCCT 1047478 47 100.0 30 ............................................... TCCCAATGCTTTTTCTTTTTGTTTGATCCT 1047555 47 100.0 30 ............................................... ATCAAACTTATCAATTTCATACCCTTCTGG 1047632 47 100.0 30 ............................................... GAGAAAAGAGGTCAAAACATTAAAGGTAAA 1047709 47 100.0 30 ............................................... TTTTCCAGTTGTGAATGATTTGCCCTTGTG 1047786 47 100.0 30 ............................................... GGGTTTAAGTTTTGTAAGGCTTAAACAATA 1047863 47 100.0 30 ............................................... CAACCTTTCCGTTGGAAATCATGTGCAGCC 1047940 47 100.0 30 ............................................... TTCTAGCATTTTCTTCTGCGACTGCCTTTC 1048017 47 100.0 30 ............................................... ATGGGGTAAATGTTGATCATTGTAAGTAAG 1048094 47 100.0 30 ............................................... TTTTATGCTCAGCATTAGACATATCATATT 1048171 47 100.0 30 ............................................... TTAGAAAAGTATTAGGACTTGGAACTATTA 1048248 47 100.0 30 ............................................... AATATTATATTCTATTTAGTCCTGGCATTA 1048325 47 100.0 31 ............................................... CGTTTTCTATGTAAGTGTCTTTGAATTGGTC 1048403 47 100.0 30 ............................................... TTCTCCTATTCTGTCCTTTTTGTAAAAACA 1048480 47 100.0 30 ............................................... TATTCACTTTGTAACTTGGGCTGAAACCAA 1048557 47 100.0 30 ............................................... CATAATCTCTTTGTTTTGTTTCTTTGCTTC 1048634 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== =============================== ================== 39 47 99.2 30 GTTGTGAATTGCTTTCAAAAATTATTATCTTCGTGATTAGTCACAGC # Left flank : ATCCTTCAGGAGTTCCTCTCTTTACCCTCAATGAATCTGATCTCCTGAACTTGTTGGAACGAAACAGGGACTCCTTTTCCCTTACGTCCAGATAATAGGTAAGTTTTTCAGTTTTGGTGCTGTCTGAGTTCGGTTTGTATCTCAAATCATAAATAAAGCTTGAATTCTGTCCGAAAAGGAATGAAGAAAATAAAATGAGAATAATTAAATGTACTTTCATGAGTTATTATTTAATAGTTTTTATGGTTATCGTTTATAAAGAAACTGGCTGCCTGGACAAAAATAATTTCATAATAATAGGCAGTTTGTAAGTGCTACAGGCGGTTTGTTGTAATGATCTTTATCACATTCCGGCTGATCTCACTTCTGTTTCATTAAAAAGTATTTTTTTTGCATCAAAAATAAAGCCATGAAAAAAATTCTATTCCTGTCCCTCACTGCCAGCCTGCTTATTTCCTGTAGTTCCTACATTGACGAGCCGGTAATCATTACAGATCCTG # Right flank : CCTCAAAAAACAATCTGCTGAAAATCAGCAGATTGTTTTTGTTTTTAGGATTTAAAAATTAGAATAATTCAAGCTGTTGAAAGGTTGGAGGGGGTTCTTCTTTATTTCTGGCAAAGAATATCTCAATATCTCCAAACTGTTTGTCGGTAATGCACATAATAGCTACTTTTCCGGCTTTTGGAAGCATGAATTTTACTCTTTTAATATGAACCTCAGCATTTTCACGACTAGGACAATGCCTTACATACATTGAAAACTGAAATAACGTAAAACCATCATCAAGCAAAGATTTACGAAAGCGGCTAGCGTCTTTCATATTGGCTTTAGTTTCTGTCGGCAAATCATATAATACTAAAACCCACATAATTCGATAAGCATTAAACCTTTCGGCATTCATATCAGTTCAGGATAAGAGATCAGGCGTTTTTCTCCCGTATAACATTTATACAGTGATGTGGCTGTTGTTTTTACGGCTACCAGTAATGGTCTGGTTTTATCAT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGAATTGCTTTCAAAAATTATTATCTTCGTGATTAGTCACAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.09%AT] # Reference repeat match prediction: F [matched GTTGTGAATTGCTTTCAAAAATTATTATCTTCGTGATTAGTCACAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.50,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [14-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,1.05 Confidence: MEDIUM] # Array family : II-C [Matched known repeat from this family], //