Array 1 3783-3938 **** Predicted by CRISPRDetect 2.4 *** >NZ_RHNQ01000097.1 Loigolactobacillus backii strain JCM 18665 contig97, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ========================================== ================== 3783 24 100.0 42 ........................ CAGAAATACTTTCATGGTTAAACTTGGGGTTTAACCTTATTG 3849 24 100.0 42 ........................ AAACTTTAGAATTATGCCTAATAATGGGGTTTAACCTTATTG 3915 24 62.5 0 .............TGG.TTTAGG. | ========== ====== ====== ====== ======================== ========================================== ================== 3 24 87.5 42 ATTTAACATCCTTCTAAAACTCAT # Left flank : CTAAGGCAATCCCTTGCTGCTGACGTTCGATGATCCGCTGACGTTCACTTTCCGCCTGGTACTTATACAATTCAATGATGAGGTTAGTCATAAGTTGACGCAAATTAGGGTCAGTAATTCCAGTCATGGACGGTAAATTCAACACATCTAGGGTGGCACCCTTATTTTGAATGGAGTTCATGATCTTAGTCAAATCCTGGTTGTTTCTGCCTAAGCGATCTAATTCAGTGACCATTACAATATCACCCTCACGAATATAGGCCAGCATTTTTTTCAGTTCTGGCCGATTAGTGTTAGCCCCACTTAATTTATCCGTAAATAATTTATCAACGTCTTTTAAAGCCGCTAACTGTCGATCTAAATGTTGCTCCTTGGAACTCACACGCGCATAACCGATTTTAGCCATTTCCAATTCTCCTTTTGGACAGTTCTAATGAACACTTGCAATGCCTAGTATAGCACAGAAATAAAAAAGACCAATAGGGTATACCCTAGTGGCC # Right flank : TCAAGAATCTGGACACATTTTATGTATAATTTAAGCGACTAATTTTTCCTTTTCATTTGGAGTTAAATAATCAATGCTACTGTGAATTCGAGCACTGTTATAAAAGCTCTCAATGTAGCTGAATATTGCAGCATTTGCTTCTTCAAAATCCTGATAATGGTGTTGGTAAACCTCTTCTTTTTTCAAACTGGCGTGAAATGATTCCAAACATGAATTGTCATAGGGACAGCCACGCTTGCTATAAGAATGGCGAATATGGTGTTGCGCTAAGATCTGTTCAAAGCCAGCACTGCGGTACTGGCTACCCAGATCGGTATGCACAATTAAGTTATTAGTCGTCTTTCTAGTTTCAAAGGCTTGTTGAAAAGTGCTGATCACAAGATCAGCAGTCATATGACGGCTGATTTTATGGGCAATGATTTTACGTGAATATAAATCCTGAATGCTTGATAAATAACACCAGCCATTGGCTTTGGTGTGAATATAAGTTATGTCTGCAC # Questionable array : NO Score: 4.74 # Score Detail : 1:0, 2:3, 3:0, 4:0.38, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAACATCCTTCTAAAACTCAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 21603-17349 **** Predicted by CRISPRDetect 2.4 *** >NZ_RHNQ01000034.1 Loigolactobacillus backii strain JCM 18665 contig34, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 21602 36 100.0 30 .................................... TTTCTTACTATTTTTATCTCTATTCCATCA 21536 36 100.0 30 .................................... GCAGTGCTGCGGCGCCTCAAACCATTTGAT 21470 36 100.0 29 .................................... GAATGTCTGGGTTCATCGTTTTTTAAAAA 21405 36 100.0 30 .................................... TATTTTACCTCCTGTGTTGTGTCTGTGTGT 21339 36 100.0 30 .................................... ATTGAACAATTAGATGAAATTTTACTGGCG 21273 36 100.0 30 .................................... TCTGGATCAACGTTCCGAAACAACAATCCA 21207 36 100.0 30 .................................... TGCTGAATTAAAGATTCTTTGATCTGGTCA 21141 36 100.0 30 .................................... ATAACCGTTGCGTTATACACCGTACCATTG 21075 36 100.0 30 .................................... ATGTTTTTGACAGTGATCGCATGGGTAACA 21009 36 100.0 30 .................................... TGCATTACCTCCATTTTTTGTTGTTCCTGT 20943 36 100.0 30 .................................... AGACTGCTCCAATGACAATGACCATTGTCC 20877 36 100.0 30 .................................... ACAGCCATGCAGAGCCTGATCCTTAAATAT 20811 36 100.0 30 .................................... TTAATTACGCGGTTAAGCAAAAGATCTTAG 20745 36 100.0 30 .................................... CCAGACGAAACGTATTTAACCCCGTTGCCG 20679 36 100.0 30 .................................... ACAACCTAGTCGTGACAAAGTAGTAGAAGC 20613 36 100.0 30 .................................... CTGAAAATACCTCACTAGACCTAATTTTTA 20547 36 100.0 30 .................................... TTTCAGTATCGCCTTGTTTGATTTGCTGAG 20481 36 100.0 30 .................................... TAAATTGCGTTATCGAGTTGTATTGCCTGG 20415 36 100.0 30 .................................... TTAACCTGATAATAATAGTCAGCAAATCTT 20349 36 100.0 29 .................................... AGCGACGCTAAACAGGCTGTGGCTGATAA 20284 36 100.0 30 .................................... ATAAGGTTAGCGAGACCTTAGCATGGATAA 20218 36 100.0 30 .................................... TAGTGGATAAGACCAAGACCGAAGAATTAG 20152 36 100.0 30 .................................... CGCAATTCAAAGGCTCTTTGTCGGCGCTGT 20086 36 100.0 30 .................................... AAGTCTTTCAGTTTTGATGCCGGTGTCTGG 20020 36 100.0 30 .................................... CTAGGATAGGTATAAAAGCTGAACTAAAAA 19954 36 100.0 30 .................................... AGGAATTAGCATTGGAAATACTGCGGGCAT 19888 36 100.0 30 .................................... CTTACACGACCGCTTGAACGCTTGTGTTAG 19822 36 100.0 30 .................................... TCATCTCCTTCTACCCGATTGACCCCCATT 19756 36 100.0 30 .................................... CAATAGCAGAAAAGTATGAGCGATGTGGGA 19690 36 100.0 30 .................................... ACGCCTAGAACAGTACCCATTGCAGTACCA 19624 36 100.0 30 .................................... GTCTGACGTGCCGCGGTTTGGCTTTTCTGG 19558 36 100.0 30 .................................... CAGAGAAATTGATATAGCTCTTAGCTTCTT 19492 36 100.0 30 .................................... ACCAGACTTCTTCACCAGCAATTTTTGCGA 19426 36 100.0 30 .................................... TACGAAGCACCGCATAAAGCGGATGTGCTC 19360 36 100.0 30 .................................... CACCGGTTTGGCTTCACTCTTTAAAGACAA 19294 36 100.0 30 .................................... GATCGGACGCACTTTGTCTATTATGGATTT 19228 36 100.0 30 .................................... AGCCAAGAATAATAAAACGGAGGCGATATT 19162 36 100.0 30 .................................... CTGATATTTAGATTTTAGTAACTACACTTT 19096 36 100.0 30 .................................... GAGAGCGGCCACCGTTTGCGTGACATTATC 19030 36 100.0 30 .................................... TGTATTTTGCGGTGTGGTCATTTTTCATGA 18964 36 100.0 30 .................................... ATTATACGTTGAAAAATACAATAAGCAGAT 18898 36 100.0 30 .................................... CAACTTCTCTTGCCGATCAATTTGCTTTAA 18832 36 100.0 30 .................................... TAAAGTTGTCGGAAGTGCGTCCCACATCTG 18766 36 100.0 30 .................................... CAACTAGAATTGCATCCTTATCCACTGATG 18700 36 100.0 29 .................................... CATTTCCGTCTAGCGAGATAATTGAGTGA 18635 36 100.0 30 .................................... GGATAATTTTTGCTTATCTCGTTCCTTGTT 18569 36 100.0 30 .................................... CAACTAGAATTGCATCCTTATCCACTGATG 18503 36 100.0 29 .................................... CATTTCCGTCTAGCGAGATAATTGAGTGA 18438 36 100.0 30 .................................... GGATAATTTTTGCTTATCTCGTTCCTTGTT 18372 36 100.0 30 .................................... CAACTAGAATTGCATCCTTATCCACTGATG 18306 36 100.0 30 .................................... ACGAGAAGTTTTGCACCGCCGTGTTCGTGG 18240 36 100.0 30 .................................... GCTGTTCTGTGTACTTGCGCATAATGACCG 18174 36 100.0 30 .................................... ATGGTTCTGGATTTTAGTTGTCTTTATTGT 18108 36 100.0 30 .................................... CCTTGGTTAGCTCAATTTTCTTAGATACAT 18042 36 100.0 30 .................................... TACTGAACTAGTTAATCAATATAATAAAAA 17976 36 100.0 30 .................................... CTTTCAATGTAAGTCAATACCGATTTAGTG 17910 36 100.0 30 .................................... CACAATCATTACCATTACGATGCTCGCTGG 17844 36 100.0 30 .................................... TCTCTATACTGAGAAATAAATATGTCTTGA 17778 36 100.0 29 .................................... ACTCCTGGTTCAAACATTGAATACTATGT 17713 36 100.0 30 .................................... TCCACTCAGCCAGCTCATAATGATATGAGT 17647 36 100.0 30 .................................... GCCAACACGTAAGGCAATTAGTGGCGTTTG 17581 36 100.0 30 .................................... CAAAGGTAATCACAGGTATCGTTCGCTTAT 17515 36 100.0 29 .................................... CAAAAGCAATGATGAACCTTATATTTATA 17450 36 100.0 30 .................................... TGACCGTGTGTGTTATTTCTTCGTCAATTT 17384 36 97.2 0 .............C...................... | ========== ====== ====== ====== ==================================== ============================== ================== 65 36 100.0 30 GATCTATTTTAGCTGAAAACTGAAGGAATCAATAGC # Left flank : GATGAATTTCATTCGTTGAGTAACGCGGTTCATAAATTAGTTTCATCGTACACTACTTGTTGTCGTAATAACTCTGCCGCGGGATTAAAGTTGCCGGAACTTATCCCGTTGGTGGCACACGAGTATGAGTAGCAAATATATGCGCCTATTAGTTATGTTTGATTTACCAGTAGTAAAGGCAAAAGATCGTCGTGCAGCGGCAAAATTCCGGCAGTATTTATTGGGCGAAGGCTACGTTATGATGCAATACTCGGTTTATTATCGCATTGTAAATGGTTATGATATGTCAAAAAAATACGAGCTGCGGTTAGATGATAATTTGCCCGAAAAAGGGTCAGTAAGATTGTTGGTTATAACCGAAAAACAATTCGATGAAATGCGTCTGCTAGTAGGTGATCCACTGCCTAACGAAGAAAAAGTTGAAAGTGGGCAGATGACCACTTTTTAGACAAGCAAAAGAGCCTGATATCCGCGTGATATTAGGCTCTTTTGGTACACTG # Right flank : TCAGCATAACATAGTAAGATATAAGGCTGGAAATTGTCTTCATAGTTGCGAATTATGTCGGGTTTTCAACGACTCGAATTTATACTAGGTTTCTAATATTTGCCTTTATGTGTTGACTTTTCTAAGCTTACTGACCTTCTTGGCGGATGGGAGGAAGCCTATTTTTAAATAGAGAGTGTCGGCTTTTATTGTGAAACCATCATATCAGCCATAACTACATATTTTTTTGTGCCAGTACCGGTGCCACTTGCTTCGTTTTCAGAAGCAAATTTAACATTGCAAATACCAATATTTCCTTGCTTTACTGCCAATGAACAAGCATTTTCAATAGTTTTTTGAAGGCTTTTACCCTCACTGAATACCACATTTCCTGTCGATTGATAACCTTCTAATGCCTGACCCATTGTGATTAAAGTTTTGTTTGAATTGTTATTAAATAATCCCATGATATTAACTCCTTAATTTACATTCATTTTTGTGTTTAAGATATTTGTCTTGGC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATCTATTTTAGCTGAAAACTGAAGGAATCAATAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.30,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA //