Array 1 523270-524010 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT906436.1 Listeria monocytogenes strain NCTC10357 chromosome 1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 523270 29 100.0 36 ............................. TCTTTAGTTGTTACTTGTTGGTTAATGAGATCTACC 523335 29 100.0 36 ............................. TGCTCTCTTTTGTGTAAAGCACATCAAGCATGTAGC 523400 29 100.0 35 ............................. GCGATTTTTGTCAAAGGGACAGCGATGGGTTACAA 523464 29 100.0 37 ............................. TTACCACCAAAGTCCCTACACTCAATACCACCAAAGC 523530 29 100.0 35 ............................. CGCTCTGACCTGTTCCTTGTGCAACACTCGTTACA 523594 29 100.0 34 ............................. TTTTCTACTCCTGCTTCTAAAATGTCGTTTATAA 523657 29 100.0 35 ............................. CTAAAACATCCTTCACTGTATCAACTCCTTTCTAT 523721 29 96.6 36 A............................ AAAATAGGAGGAAATAAATTATGACTATCAAATTAA 523786 29 100.0 35 ............................. TTTGTTGAATCAACGGATATAGATTTTACAATTTC 523850 29 96.6 37 ................A............ TTGGTTCCTTTGGAAAACAACAATAACGTGTAGTATT 523916 29 75.9 36 ......T.C.A.C...CA...T....... GCAGAAGCAGCAAAATAACCAAAAGTAATGACTTTC G [523939] 523982 29 79.3 0 ......A..T....AGA......A..... | ========== ====== ====== ====== ============================= ===================================== ================== 12 29 95.7 36 GTTTTAGTTACTTATTGTGAAATGTAAAT # Left flank : CGTCCGTGCCACTACTTCAGCTGATATTTTACTTGAAAAAGGTGCCGTAGAAGTTATCGCTTGCGCAACCCACTCCGTCATGGCTGGAAACGCAACCGAACGCTTACAAAACTCCAATATCAAAGAAGTCATCACATCCGACTCCATCGATCTTCCAGAAGACAAGCAATTCGACAAACTAACAACCATCTCCATCGGACGAATCTTAGGCCGCGCAATCGAAGGCGTACAAGAAAACCGCTCGTTGCATCCGTTGTTTTAAAGAATAAGCAGAAAACAGTAACTTAGTAGAGTTGCTGTTTTTTTGTTATCTGTCGACCTCGAGTAGCGTGAAAAATACCGGGGATCGACAGAAAGTTGTAAGTGGTTGGGGTGGAAGAAGTTTGGCGGTATTTGCTTGGGGGAAATCTTCCGGATAAGAGGAGATTTTAGATGTTTTTTGGTAGGTCGACAGAAATAGCTCTTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGTGG # Right flank : TGAAAACCTGTTATACATAGGATTATCTATTTCCGTTATAATTATTCCTTGCAAATAAATTCCAAAAAACAAACCCCTCATTAATTGGGTTTGTTTTTTTGTGAATAATTATAGTCAAACGAGCAATCTGTTAACAATTTAGCAATAAACGCAATAAAAAGCCGTTTTTTCACTATGGATTGTACTATAAAACATAATCTACCTATGCTAAAATTTAAGGGAAGGTAAGCTGAATAATACATATAAGGAGGACTCTACTATTGAAAAAGATTCTAGTGCCCATATTATTGTTAGCAACAATCTTAGCAAGCTGTTCCTCGCCGAATGAAAAAATAACCAAAGACACTAAAATATCCAAGACTATTACAATAAGAGCAGATTACAAAGTTCCAAAAGATATTAAAGAACTTGAGGATGATAGTGCTAATATTGTTAAAGTAAAATTTCTTCAAAATAAAACGATAGGCAAGGATGGTAGTACTATCAGCGAGATAGAAATT # Questionable array : NO Score: 6.05 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 2601236-2599152 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT906436.1 Listeria monocytogenes strain NCTC10357 chromosome 1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 2601235 36 100.0 30 .................................... TCGTGATTTCTTCCTCATGCGCGCTTTTGA 2601169 36 100.0 30 .................................... TTATCAGCAATTGAAACTATTAAAAATGAC 2601103 36 100.0 30 .................................... CCTAGACCTAGATGCTACTAGAGTGGACGA 2601037 36 100.0 30 .................................... TAATGCATCTTTATATTGATTTACCTCACC 2600971 36 100.0 31 .................................... TGGAAATGAACGATTGTCGGCATTCACGAAT 2600904 36 100.0 30 .................................... AGATATGGGCGAACTACCCGACGACAACAA 2600838 36 100.0 30 .................................... GAAGAAGTCACTAGTTGGGTCAAGCAAGGC 2600772 36 100.0 30 .................................... TAGTGCCAGTAAATTCAGTTCCTCCAAAGG 2600706 36 100.0 30 .................................... TGTAAATGCGTTTAAATCGATGGGAAGCGC 2600640 36 100.0 30 .................................... ACACGTGTGGAAGAAGAGGGCTCTGACGCT 2600574 36 100.0 30 .................................... GTATGAAACGGTTAAATGGATCTCTATAGC 2600508 36 100.0 30 .................................... ACCAAGTCTAAGTGTAGACTGGCGTGCGCA 2600442 36 100.0 30 .................................... TTTAATGATTTTCTTTTGCGCGCCGTTGGT 2600376 36 100.0 30 .................................... GAATTTTTTTGTAAGATCGACAACTTTTTC 2600310 36 100.0 30 .................................... TTGATAATGATAAGGCTGTACGGATTATTC 2600244 36 100.0 30 .................................... TAACAGTGTATTTCTATTGCTCGGTGTGTT 2600178 36 100.0 30 .................................... TGGAGATAACGAAGAGTAAAGCGAGGCAGC 2600112 36 100.0 30 .................................... GCGTTGAACCAGAAGGTGGGAAAGAAACAC 2600046 36 100.0 30 .................................... TGGTAATTTAGTATCTATTACGGCTGGGAA 2599980 36 100.0 30 .................................... AGTTCATGCAGATGTTCCAACAGACTATGA 2599914 36 100.0 30 .................................... AACAGCTCGGTTCACAGCCCAAACAGGCGA 2599848 36 100.0 31 .................................... TAGCATCCCTTTGTTGAAAACATAGTCTGAA 2599781 36 100.0 30 .................................... TTAAATTTCCCTTCTAACACTATCTATCAA 2599715 36 100.0 30 .................................... ACGTGATGGTCCTTGGAAAAGGAGATTACT 2599649 36 100.0 30 .................................... TAGTTATTTGCTTAGAAATGTCATCCATCA 2599583 36 100.0 30 .................................... CTAGAAGCTTTGACATTAATATTACGCTTA 2599517 36 100.0 30 .................................... AAATAATTTTTTTGATCATGTTGCAACAGC 2599451 36 100.0 30 .................................... TGCAATATTGTCTGGATCTTTTTTCTTGTT 2599385 36 100.0 30 .................................... AGTTAGATAGATAAACAAACTAAACAAAGG 2599319 36 100.0 30 .................................... TAGTTTTTCTTCGTCCTCTAAACGCAAGCT 2599253 36 100.0 30 .................................... TGTCTGAATGTAGTTGATATCTTTAACTTG 2599187 36 72.2 0 .........A..CA.....C.....A.C.A..C.TA | ========== ====== ====== ====== ==================================== =============================== ================== 32 36 99.1 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAGCTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACGGTATATCTCTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACCGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : GAGACAAAATGCATCGCAATTACCAAACCATGGTTAAATTTAAAAAGGAGTTAAACTATCTACATGACACAGTATCACTATCTTGCTTCGAAGTCGCTCTTAGAAAAGGACGGAGAAAAGTTTCCTCATCTCTATATATACTAGAGTGGCTTAGACTTCTTAAATCCGAATTTTGAAATGAATGTTGACCAAGATAAAGATATAAATAAATTGTTTCCCTATTCAATTCGTTTCAACTCAACTTGCAAATTTCAAGTTGCTACAAGCAAAGGGGATATACCGTTGAAAGTGGAGGAGCAAAATAATTGTTACGAGACCAAAAGTTTAAAAATTTTATATGATTATATTCTAAATGCGAGTAAAAATGGTGACACGCTTGAACTATATACTGTTTGGACAGCGAGAAAGATTTACCGTTAACGCACAAACCAGAACTGCTTTAACTATCGGAAATCTAGTTTTAAGTGACAGAGAGCTATTAATAATTAAAAGTGAGACAC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //