Array 1 191822-190345 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDQG01000004.1 Salmonella enterica subsp. enterica serovar Typhimurium strain 112 NODE_4_length_215148_cov_22.5839, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 191821 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 191760 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 191698 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 191637 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 191576 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 191515 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 191454 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 191393 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 191332 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 191271 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 191210 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 191149 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 191088 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 191026 29 100.0 74 ............................. AAGAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 190923 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 190862 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 190801 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 190740 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 190679 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 190618 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 190557 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 190496 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 190435 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 190374 29 96.6 0 A............................ | A [190347] ========== ====== ====== ====== ============================= ========================================================================== ================== 24 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 209569-207954 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDQG01000004.1 Salmonella enterica subsp. enterica serovar Typhimurium strain 112 NODE_4_length_215148_cov_22.5839, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 209568 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 209507 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 209446 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 209385 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 209324 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 209263 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 209202 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 209141 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 209080 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 209019 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 208958 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 208897 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 208836 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 208775 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 208714 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 208653 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 208592 29 100.0 32 ............................. CCCCGATAGAGACGCTTCTGTAGTCACTGGCA 208531 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 208469 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 208408 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 208347 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 208286 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 208225 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 208164 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 208103 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 208042 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 207981 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 27 29 98.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //