Array 1 3-274 **** Predicted by CRISPRDetect 2.4 *** >NZ_WBSQ01000448.1 Salmonella enterica strain KW866 NODE_448_length_1592_cov_4.946758, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3 29 100.0 32 ............................. CGATTTGTATTGATTAATTTTGTCAAGATTGT 64 29 100.0 32 ............................. AAATCGACTACGGCGGGCGCAAACAATACACG 125 29 100.0 32 ............................. GCGCAGGCCGGTATTGATTGCGAATTGCCACA 186 29 100.0 32 ............................. TACCAACAATTCAGCGTTACGCCAACGGTAAC 247 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 5 29 96.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTG # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGTTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCATGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 5.89 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [1.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 7555-9355 **** Predicted by CRISPRDetect 2.4 *** >NZ_WBSQ01000053.1 Salmonella enterica strain KW866 NODE_53_length_20648_cov_6.879099, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 7555 29 100.0 32 ............................. AAATTGCTCGAAATTGTCGCCTATTGGGAAAT 7616 29 100.0 32 ............................. GTTTCCAAACTTTTATATTTCTGTGGACAATA 7677 29 100.0 32 ............................. TCGGCAGCTACTTCGGTGTTAGGCGGCATCCA 7738 29 100.0 32 ............................. CAGACAGTAAAAGTGAGGCAGCAGGGCGGAGC 7799 29 100.0 32 ............................. GCATCAAGCCCCCCATCCGCCCGGGTTGAGAG 7860 29 100.0 32 ............................. AATTCCTCGATAACGATCTGCACCAGGTTGAA 7921 29 100.0 32 ............................. CCGTATCGGGTGTTTAATTTTTACGTGAGAGA 7982 29 100.0 32 ............................. AGCGATACAATTCAGGAGTTCCAATTCTCTGT 8043 29 100.0 32 ............................. TTAACGTAACAGTGTATTTTTTGTCCCCGTTG 8104 29 100.0 33 ............................. GTCAGAAATATTAGTTACCTCGGCGGCGTTAGC 8166 29 100.0 32 ............................. GCGATCACCTGTCGCTGGCGGAAATCAATAGC 8227 29 100.0 32 ............................. TTGACACAATAGCGAAATCAATTACTGAAAAG 8288 29 100.0 32 ............................. GACGCCAATTATACATTGGCTCTATATGAATT 8349 29 100.0 32 ............................. CTCCCGGCCGAGGCCGTGACGGTGAAACAGAA 8410 29 100.0 32 ............................. GTACAGAAAAAAGAGGCGTCGCATGTGGCGAT 8471 29 100.0 32 ............................. GGCCTCACAGCGGCGCCCGCTGGTCACGACCA 8532 29 100.0 32 ............................. CCCGCCGTCTGTCACACCTGTTATGTAATTGT 8593 29 100.0 32 ............................. GCAAAAGGATCGAACAAAAAACCTGTGGTCAT 8654 29 100.0 32 ............................. CCGTTACCGTTGTTCACGTCCGGTTCGCTAAT 8715 29 100.0 32 ............................. TCTGTACACGACGTAACGACCACATCATTCAG 8776 29 100.0 32 ............................. GCGACGAGCGCAACGCAGGTTACTGGCGTTGA 8837 29 100.0 32 ............................. TTTTCGCTCGCGCTCGTCCATCATTCCGCGCC 8898 29 100.0 32 ............................. ATAATCAGGTCGTTAATATTTTTTGTCTGCGC 8959 29 100.0 32 ............................. GGGCAGAATTAACGGACGAACAGCGGCAGACA 9020 29 100.0 33 ............................. ACCGTTAAATCCTGGTCTACTACCCCGCCCACC 9082 29 100.0 32 ............................. GGAGCGGGACGACAGCGAACCATCCGGAAAAA 9143 29 96.6 32 ..........A.................. CCAGACGACCTTCGGTGTCTTTAATCAGTTTC 9204 29 100.0 32 ............................. CGATAACGGGCGGGCGTTTATACGTGCCCGCG 9265 29 100.0 32 ............................. CAAAAGGCCGACGGTGTGTACACCTCTAAAAA 9326 29 96.6 0 ............T................ | A [9353] ========== ====== ====== ====== ============================= ================================= ================== 30 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TAGCCAGGATATTTGGTCTTATCAGCAGCAGGCGGCGTTGGAATGGCTGGTGCGCCAGGGGGAGCAAAATGGCTTTACCCTACGCGAGGCGAGCGTTGATGCTTACCGGCAGCAGCAGATACGTCGCGAGAAATCCCGGCAGATGATTCAGTTTAGCAGCGTGGACTATACCGGCGTGCTGGTGATTAACGATCCCGCGCTTTTCCTGCAACGTCTGGCGCAGGGGTACGGTAAAAGCCGGGCGTTTGGCTGCGGAATGATGATGATCAAACCCGGAGATAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTCCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGCGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGTGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //