Array 1 97425-97758 **** Predicted by CRISPRDetect 2.4 *** >NZ_VSKT01000026.1 Streptomyces cacaoi strain OABC16 Scaffold26, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 97425 29 100.0 32 ............................. AACGCCGAGGAGAACACTCCCGGGACCGAGGC 97486 29 100.0 32 ............................. GTCCCGGGGATCGACGGGCAGGCCGCGGCGGT 97547 29 96.6 32 ............................C ACGGAGTCACCTCGTCGGAGAAGACGTTCACT 97608 29 100.0 32 ............................. ACCGACACCGCCCCGCCCTGCCCCTACCGGAG 97669 29 100.0 32 ............................. TCCAGGGCGGCGTAGCTGAGGCCGTAGTGGGC 97730 29 82.8 0 .............C.......C...A.AT | ========== ====== ====== ====== ============================= ================================ ================== 6 29 96.6 32 GTGCTCCCCGCACGCGCGGGGGTGGTCCG # Left flank : TTCGCCCTCACGGTAGCCGTACATCTGGGCACGGTCGGCGGGTCGGTTACCTCGTCACCCTGGATCAGGATCTCGCCCGTATCGATGTCCGCGAAGATCGCCGGACACCCCGTCTTGCCCGAAGTGCTGCCCACGAGAGCCAGGTTCCTCGCCATCGTCCTACTCCTCCACGACAGAACGTTGTGGAGTGAGGCACCGTAGGCAGCGGAGCGAGAAACAGAGAGGCCGCCCGGCAGACGCCGGACGCCTTCGCTGCCGCGCAGCCACCGGACGAGCCGGCCACTTCCCCAGCCACCTGTACCAGCGCCACCAGCACACCCCACCACGCCCACCACTCCGCCTGCTCCACCGCTGCCTCCCCTTGGTCGTTGGCAGGACCGTACGCAGGACTGGCTGTCGGGCGTCGTGAGTTGTCCACAGGCGGGCAGGTAAGTCGTACCGGCAGCGACGAGGTAATGCTGAATACGCCATTCCGCGAGTAACGTCGCTGGTCAGGAAGT # Right flank : TGACGAAATCCCCCCTGCCCGGCCAGGTGCGCCCGGCCAGGGGCATCCAGCCGGCGAAGCCGAGTAGTGCCAAGGCGAAGGCGCTCCCAGCGAGGGCACGAGACAGGGCGCGGTATGCGGATGCTCGCCGCGCCGGGGGGCGGAGGGGAGACGGCGCCTACCAGCACCCACAAGGGCTCTCCTGCCGCGTCCCCCTCGGCTGAGCGGAGCGCCGGGCAGGGGCGCGTCCCGCCGCGGCGGCATGCCCGACAAGAGCCTCATCCCAGGTCGGCGGCATGCCCGGCAGGCGGCAGGAGCCTCATCCCAGGCAGGCGGCAAAACCCGGCAAGAGCCCCCTCCCAGGCAGGCGGCATACGCGGGCAGGAGCCCCATCCCAGGCGCGCGGCATACCCAGCAGGAGCCCCATCCCAGGCGGGCGAGCAAAACCCGGCAAGAGCCTCATCCCAGGCGCGCGGCACACCCAGCAGGAGCCCCATCCCAGGCGAGCGGCAGAACCCGGC # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCACGCGCGGGGGTGGTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCGAGCGGGGGTGGTCCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 143525-143127 **** Predicted by CRISPRDetect 2.4 *** >NZ_VSKT01000026.1 Streptomyces cacaoi strain OABC16 Scaffold26, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =================================== ================== 143524 29 100.0 32 ............................. GGCCCTGTGACCGTGCGCTCGCTGCCGCCCTC 143463 29 100.0 32 ............................. CGCGTATGCGGCGCTACGACACACCGCCGCTG 143402 29 100.0 32 ............................. GCCACGATCACCAAGCCCGTCGCGGGGATGGT 143341 29 100.0 32 ............................. CGCATCACCAGCCGCCACATCGGCGGCGTCGT 143280 29 100.0 32 ............................. CCGACCGGTTTCCCTGAAGGGCAGCAAACACT 143219 29 100.0 35 ............................. TGGCCCTCGGCCTTTTTGGCGAAGCGGAGACCGTG 143155 29 89.7 0 .............A........C..C... | ========== ====== ====== ====== ============================= =================================== ================== 7 29 98.5 33 GTGCTCCCCGCACGCGCGGGGATGGTCCC # Left flank : TGACCTGGCGATGCGCCCTCGCTCGGCCACGCGGCCGACGCGGCGCCACGGGGACGCTGCCCGGGACCTGTTGGAGGCGGAGAGGCGCGCGCCGGAGGAGGCGGCCCGCCCTTCCGTGGTGTGACTGGTCGGCCGGTTGCTGGAGCTGGTGCCGTCACCGGGGCCGGAGTTGCGCGGCCTCGCACAACGCTGTGGACTCCCCGCATGACGCGGCCCGCCCTCTACCTGATCGTCTGCGCGGCAGGCCCGGCCCAGGACCTCGACGACGGCGTCCGCGCCGCGCAAGCCGCGGGGTGGGACACCTGCCTCGTCCTCTCGCCGATCGCCGCGACCTGGTGGGGCCCACTGGTACAGGGGCGAGCACCCGACTCATGTCCCCGCCGGGTCCGTTTCCTGGCATGCTGATGCCGTGCTGAGGGGAGGGTGCGTCCGGAATATCGGAGTCGCAGGAAGTGATGGAAATCCGCACTCCGGCCCCAGAAAGCCCCAGGTCAGCAAGT # Right flank : CCCCGACCGCCGGGGCTGGAGCAAGACCTGCCGCGCTCGCCGGGCGCGTGGGTCCCCCTGGGAGCGCAGGTGAAGGCTCCCAGGGAAGGGCTCCCGCCCCCGACTCCCTTGCCCCGCACGGCACTTGAAACGCTCTCACTTGAGCGGCAGCGGACTCTGCTGATAGGTGTGGAGGGGGGCGCGGAGGGCGCCAGGGTCCTTTGGGGTAACTGTTTTCGTGAATTTCTTCACATGAGAAAGTGCCCGCTGGAGGGGTTCTCCGCCCCGGAATCCAAGGTTCCAGGGGGAGTTCGGGGGGTCGATTGCCCCGTCGGGTGGAGCGGCGCGAGGGAGAGGTGCGGTCGGCTCCGCAGTGGTTCAGTCGGGGGGTCCGGGATCCCTGCTGCTCAAGGGGTGCGTCAACGGCTCGTGGGGCCGAGTGGTTCCCCCGGCGCGCTGTGGGGTCGATCACGGGGCGGCGGAGTGTAGCAGAGGGTGGGGGCATCCTTGTGAAGGCCCTC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCACGCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCCCGCGCGGGGATGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [18.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 283607-284306 **** Predicted by CRISPRDetect 2.4 *** >NZ_VSKT01000011.1 Streptomyces cacaoi strain OABC16 Scaffold11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 283607 29 93.1 32 ........T................T... TGGGGGTGCCGGCATGAGCGACCGCTCCCCCC 283668 29 93.1 32 ...C.....................T... GCGGCCACGATGGGCGGCAGCAGCGGCATCAG 283729 29 96.6 32 .............T............... GTCATGTACCCGGCCGACCTGGTAATGCCCTA 283790 29 100.0 32 ............................. CAGCAACCGCAAGACCGAGCAGGAGGCACTCA 283851 29 100.0 32 ............................. ACGTCGACCGGGTGGCGCTGGAGCCAGCCGAA 283912 29 93.1 32 ...T.....................T... TTCGCGGCCTCCTCGATCCACACGACCATGTA 283973 28 93.1 33 .....................-...T... GCCTGGTTCATCTTCGGCAATCACCCCGTGAAG 284034 29 96.6 32 .........................T... CAGTCGCGGAGGCTTAGCGGCCTCACCGCTGA 284095 29 89.7 32 ..............C......G...T... GCTCCGTCGGGGTCGATCTGATGGCTCGTGGC 284156 29 86.2 32 ............TG.......G...T... GCCGGCGCACTGGGGGCCGCGTTGGACGCGCA 284217 29 86.2 32 ............TG.......G...T... AACGTGGTGGCCGGGCTCGCCGTCACCGTCCT 284278 28 89.7 0 .....-.....A.G............... | G [284295] ========== ====== ====== ====== ============================= ================================= ================== 12 29 93.1 32 GTGGTCCCCGCGCATGCGGGGTTGGCCCC # Left flank : CGTCTTCGTCTACACCGTGCCGCCCGCGGCGAAGCAACAGGCGCTCACCGACGTCACGGCAGCCGTGGACGCGGGCGCCCTGCGCGTGGGCGAGGACGCCGGCCTGCCCTTGCACCGCTTCCCCCTGGAGCGCACCGCCGACGCCCACACAACACTCGAACAGGGCGTCACAGGAAAGGTCCTGCTCGACGTCGTCTGACACCCGACCCTTCCCTCCCCATCACCTGACGTCCGGCCCACCCCTCCACACATCTCCCAAGCACTACCGTCAACGCCCGCCCGGCCTCTGTCACTTGTCACCGCGCATCCCTGGAGGAAAATGGCCCAGCACCGCCTACGGGCCGGTCCAGCAGCGGTGGAACGAGGCGGCGCACGACGGAAACCGGGAGGACAACGATGAGCCGCGCTGGGCGTGTTCGCCCGACATCACCGAAAAGCCCGAGCTTGGCAAAGTGGGTAAAATCCGTGCACCGCTGAGAAGAAACCCCTGGTCGGCTCCT # Right flank : CTTCACGTTGCCCGGCCTGATCGTGAAGCACTGGTGGCCCCCCGCACGTGCGGGCCGAGCCGGAACTCCGCCCGCCGGGCCCCCGGAGCCCCCAGAGCCCCCTCCCGAGCCCCCCCGCCCCTCCGAGCCCCACATGTAAAACGAACGTTGTACACTGGTGAGCATGGCTGGTACACGAGCAGAGATCGTCTCCTCCGCTGAGCGGGTCTTCGACCGTCACGGCTTCGCCGGGACGGGGATGGACCGGCTGTGCGAGGCGGCGAGTGTGTCGACCCGGACGCTGTACAAGCACGTCGGCAGCAAGACCGGGCTGATGGCAGCGGTGCTGGAGTCGCGGATGTCGAGGTTCTTCGAGCGGTTCGACGTGCACAGCATCGAGGAGCTGTTCGAGGCTCTGGAGACCTGGGTCGCCGCCGAGGGAGCCAGAGGCTGCCTGTTCCTGCGTGCTCAGGGCGAGACCGGCGGGCTGACCCCGGAAGTCTCGGCGGTCGTCGCCGAGT # Questionable array : NO Score: 5.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.29, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCATGCGGGGTTGGCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCATGCGGGGTTGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [5-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 603688-602807 **** Predicted by CRISPRDetect 2.4 *** >NZ_VSKT01000011.1 Streptomyces cacaoi strain OABC16 Scaffold11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 603687 28 100.0 33 ............................ TATCTCTGGGGATGCGCTGGCGGCTGCTGAGTC 603626 28 100.0 33 ............................ AGGGGGTGATCCTCGCACCCCTCGCACTGCTCC 603565 28 100.0 33 ............................ TGCGGTGGCAGACGTGGGCGGCGTGCCGGTCTA 603504 28 100.0 33 ............................ CGGACCGGTGGGTCGTTGGGCTGGACGCCGAGA 603443 28 100.0 33 ............................ GCCGGTCGGCCGCTTTCCGTCCGGCATCCGCAC 603382 28 100.0 33 ............................ GGCGATGGTGCCGGTCCAGGTGCCGTCGTCAGC 603321 28 100.0 33 ............................ GGCCGCCGGCCGCGTCCTCGACGGCCGCACCTG 603260 28 100.0 33 ............................ GTCAGTCATTGCGGGTCAGCTCAGCGCCGCTGA 603199 28 100.0 33 ............................ GGCCGCGTTGGACGCGCAGGCGCGCACCGGCCG 603138 28 96.4 33 ....C....................... GCAGAGAGACCCCCATCATGGCCGACGAGCACG 603077 28 96.4 33 ..............T............. CGCCGAGGACAAGCTCAAGGCCCTCGGAACCGC 603016 28 100.0 33 ............................ TACCCCTTCCACGTCTCCGACGTGGCCCGCGCC 602955 28 100.0 33 ............................ GGACCGCAGGGAGGCGGACTCCGCGCTGATGCG 602894 27 89.3 33 ..........T.........-...C... TGCCGACAGGCGGCTGGTGGAGACCTCGGGCAC 602834 28 89.3 0 ..........T.............GC.. | ========== ====== ====== ====== ============================ ================================= ================== 15 28 98.1 33 CTCGGCCCCGCACGCGCGGGGATGTTCC # Left flank : CGGCAGCACGGACCTTGTGCGCACCCGCCTCATCCATGGATTGGTAAGCCGGCGTCGCCTTCCCCACGTCGTGAACGCCGCACAACCACATGAAGAACCGTCGTCCGTCCCCGCCCGAGATCCGGTTCAACATGTCTCGCACGCTGGGGGCGAGGAACTCCTGCCACATCATCTCGGCCACCGCGGCCGTATCCAGCAGATGGCTGATCAACAGATTCACCCGTCCGCCCCCGTACGCGGCGGACTTCCCCCACAGCACCCCCAACTGCCGCAGGCACGACGCCTCCAGCCCTGATCGCCTCGCCACATCCACAGCCGAGACCGAACCGAAGCAGGGCGAAGACCGCGACTCTTCACGTTCCGCGTACATACCCGGATCGTGGCACAGGGTACTGACAGCGGAGACTGATTACGGCCCACCTGAGAAGCTGGCACGAAGGGGTTGACTCCGACTGAACGAAAACAGCACGGTGGCTCGACAAAGTGGCAGGTCAATCAGC # Right flank : TCTTCCCGGGCCCGGTCTTGCTCGGGTGCTCATGTGTCAGGCACGAGAAGAACAGCTCCTGTCGTCCACGGGGTCAGGCAGCGCGCAGGTCCGCGCTCAACCTTCGGCCGGCCCCGCGGAGAGTCGCAGCGAAGCGGCAAAAGCGGCAGGAGCGCTGAAGCAGCCGTCGGCCCTCGGGCGTGAGGCCGAGACGAGGGGAAGATCAACGAATTTGGGGGCTGCGTCCCGGGCTGTGATCTGTAGGCGTGAAAAATCCTGGCCGGGATCGACTCGGCCAGGATTTGAGTGGAGCCGTCAGGCTCTTGTGTGTGTCGGGAGGGGGACTTGAACCCCCACGCCCTGTAAAGGGCACTAGCACCTCAAGCTAGCGCGTCTGCCATTCCGCCACCCCGACCGGGTGTGCCGCCCGGTGCGCTGTGCGCCCTGGCGACGGGTTAAATCTTAGCACTGGTTCGGGAGTGCGATCACCCGCCTCTTGGGGTGGGCGGCGGGGAGGAGGA # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCGGCCCCGCACGCGCGGGGATGTTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 3 613318-614080 **** Predicted by CRISPRDetect 2.4 *** >NZ_VSKT01000011.1 Streptomyces cacaoi strain OABC16 Scaffold11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 613318 29 96.6 33 ............................A CAGCATCTTCGAGCGGGCACAGGAGCTCCCGGA 613380 29 96.6 32 .....T....................... GCGCGGCAGCGGACCGGGCGGCCTCGTACCTG 613441 29 96.6 32 .....T....................... CGCCACCCGGCCCCGTGCTCCCGTGCCTGCTG 613502 29 100.0 32 ............................. ACGGCGGACGGGAAGACGGGTGACTACCTGGA 613563 29 100.0 32 ............................. CCGAGAGCTGGCGCGCGTTCGGACACCGCGGC 613624 29 100.0 32 ............................. TACACCTTCCCGCGCTCGGGGCCCATGCCGCC 613685 29 96.6 32 ............................T CCGACGGCGGGCGCGGTCCGCCCGATCGGCGC 613746 29 100.0 32 ............................. AGAGAGTCCTGGTGCGCCCCGGTCGGATTGCC 613807 29 89.7 33 .........................GT.C GCTCCCCACCGGCGGCGGGTTCCCCACCCCGCC 613869 29 96.6 32 ............................T ACGTTCGACTCGCGGATGTACGGGATCCTCGC 613930 29 93.1 32 .............A......A........ CCCCACAGGCCGTGGACGGAGACGGCGACACC 613991 28 93.1 32 .................-..........C TCCCCTGGGGTGAGCTCCCCTTGGGCTACGAG 614051 29 89.7 0 ..............T........C.C... | A [614070] ========== ====== ====== ====== ============================= ================================= ================== 13 29 96.0 32 GTCGGCCCCGCACGCGCGGGGGTGTTCCG # Left flank : GTCAACGACATCAGTGAACTCCTGATGCCGGACTCCCCCGACCTCGTCGACCGTGACACCAACGCCCTCTGGGACGAAGGCGACGCCACCGTCAGCGGCGGCACCAATTGGGACGACGGCATCTTCGACGCAGACAGCTACCTGTCCGTTGTGGGGCCCGAGTTCGCCTCACCATCGGCCTCGGACGGAAAGCGACGTCCCGGATGACCGTCGTGGTTCTGATCGCCGCCCCAGAGGGACTACGCGGACATCTCACCCGCTGGATGGTCGAAGTAGCCGCAGGAGTCTTCGTCGGCTCACCCAACCAACGCATCCGCGACCGTCTCTGGACCACCCTCGCCGACCGCATCGCCGACGGCCAAGCCGTCATGATCGAACCTGCCAAGAACGAACAGGGTTGGTCCACCCGCACCGCCGGCCGCGACCGCTGGTATCCGGTGGACTTCGACGGACTGATGCTGATTGCGCGTCCCCGCCAGTAAACTCCCAGCTCAGCAAGT # Right flank : GACCGACCGCTACGGCTGCGCTCGGGCTCGGCTGTCGGCCCCGCAGCGCAGAACGATTCTCGTCTGCATGGTCCACGTCCCGGCATCGCCCCCTCAGCGCTCTGGGGAACTGCCCTGCATGGCACGTAAGCGCTAGATGCCGTACCTACACAGCAGATCAACTCGGCTACGAGGCCGGCCCGTACAGATTCGGCACACGGACGTGCCGTGCGAACAGAAGGCTCATCCGGGGAAACCCCGACCGAACGTCCGGGCCTTTCGAATATTATGAACCCGCTCAGAGTCCGGCCCATACGAGCGCGGGCCCTCCGCATGTCCGCAGAAGGGGCGCGGCTCCAAATACCACAGCAGCACACGTAAACTTCGGGGAGTCGCGCGGCTATGCGTTCCCGCACCAGCGGGATTCCTCCGAGGTTCATGCTGAGGTTGGTGCCGCAGACGGTGTCGGCCCCGCACTCGCGGGGGTCCGTCTCACGGGTCGGAGACTCCGAGGGTTCTCC # Questionable array : NO Score: 5.55 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.49, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCACGCGCGGGGGTGTTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGTCCCCGCGCACGCGGGGGTGTTCCC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [41.7-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1151762-1152524 **** Predicted by CRISPRDetect 2.4 *** >NZ_VSKT01000003.1 Streptomyces cacaoi strain OABC16 Scaffold3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 1151762 30 96.7 32 .............................T AACCCGATCGTGCACAAAAGGCAGCTCGGCGA 1151824 30 96.7 31 ............T................. CCGGGATGCTGACCATGGTGGAGGCCCTGCG 1151885 30 93.3 31 ............T................T TCCCCCAGGACGGGGCCGTGTCGGTGGACTG 1151946 30 96.7 31 ............T................. CGCGCGGACGCCTCTGCCTACAGCCATCTGG 1152007 30 100.0 31 .............................. GTCCGGATCACCATCGAAGCCGCCGACCCCG 1152068 30 100.0 31 .............................. CGCCCGCACCGTCGCAACACCTCGCCAACCG 1152129 30 100.0 31 .............................. GGGCCCGCAACTCCCGCTCGTACAGCGGGCG 1152190 30 96.7 30 ............................A. TGGGGGCCGCCGTGTCCGTTGTCGGAGTCC 1152250 30 96.7 31 .............................G GGGAAACGCGGGCCCCGGCGAATGGGTCGGA 1152311 30 96.7 31 ............T................. GCCTGACCGCCAGCGGGACTGGCCCCACGCT 1152372 30 90.0 31 .............AC.A............. AGGCCCGCGTCGAGGCGACCGGGTCGCGTGA 1152433 30 90.0 31 .............AC..............T CACCCTCATCGACCCGGACTACGCCCCCCGC G [1152454] 1152495 30 83.3 0 ...........A.AC..........G...A | ========== ====== ====== ====== ============================== ================================ ================== 13 30 95.1 31 CTGCTCCCCGCGCGTGCGGGGATGGACCCC # Left flank : CCGCTGCACCACCTGCACCCACCTCTACTGGCCCGGCGCCCACCACCCCCACCTCACCACCACCATCGCCTTGGCCCACCAGACCCTGACCCACCGGGCCCTGACCCACCGGGCCAACTCGCCCTGAAGCCCGGCTCCGTGTCCACTCCCCACCGGCTGTCGCCTGCGCCCTGCCGTACGCCGTTGCCGGTTCTTGAGCGGGGCGGCCGTGAGTGCAGGGGGCACCGCAGAACAGCCTGTTGTTCCCTGCGTGCACGGGTATGCCTCGGCCGGGTCCGACGTGGTGCGGGTTGGGGCCGCCGCTGGGCGGGCGAACATGCGTTGGTGCCTTGTGGGAGGCTGGGTGCGCCCGGAGGGGCGGGCGTAACTGCGCCGAGCCTGCTCACACGGACTGTGTCGATGGTTGTTGCCTTTTATGTCCCGAGCTGGAGGAAATGCCCGAACTCTCGAAAGTTGCTCAGAACGGCCATCGCGCGGGGTAAAACCGCAGGTCGCCGAGC # Right flank : AGGTCGGCAGAGGGGACTCGGGTGTGCTCGTGAACTGCTCTCTGCGCGTGCAGCTTCGGGCTCTCCTCGCTCGGGAGGGGGCGACGTATTCTCAGCTGCGCTCCTCGCGATGCCGACCCACGTGACGGCCCCGTCCCGGTCAAGTCGGTTGCGGATCAGGACGTTCAACGCACGAGGCGTTCAGTGTGGGCCCGGGAACTGGAGGTTGTGGGCGGTCCTCTCCCGCGGAGAACACGGCAGCGCGGCGTCCGGGGCGGCGATGTCGTACTTGAGCCATTGCGGGGCGAACCAGAGCGCGGCGTACTCGCGTGCGTGGGTGATACAGGCTTCCAGTACCTTGCCGGGCCCGGAGTTGCCCTGCGGGTAGGCGACGGCCATCGCGTCACCCACGCGACACGTCGAGCGAAGCACATCGAACACGAGAGTGCGCCACCGTGGCCGTGGGTGTTCTCGTTCACCGAAGCCAAGGTCGCGGCGACCCGGGTGGTCGTGCGGCGCAC # Questionable array : NO Score: 5.38 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.37, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCGTGCGGGGATGGACCCC # Alternate repeat : CTGCTCCCCGCGTGTGCGGGGATGGACCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCGTGCGGGGATGGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1164207-1164358 **** Predicted by CRISPRDetect 2.4 *** >NZ_VSKT01000003.1 Streptomyces cacaoi strain OABC16 Scaffold3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 1164207 30 100.0 31 .............................. CCAGCGCACCGAGGGCATCGGGTATCAAGAA 1164268 30 100.0 31 .............................. CCACCGCCACCGCCGACGGCTCGGGCCCCGC 1164329 30 96.7 0 .............................G | ========== ====== ====== ====== ============================== =============================== ================== 3 30 98.9 32 CTGCTCCCCGCGCACGCGGGGATGGACCCT # Left flank : TACAGCGGAGGGGGAGGCGGCAACTGTGTCGAGGTCGCTCGCGCCGACTCCACCGTTCAGGTCCGCGACTCCAAGGTGGTCGGGGGCCCTCGCTTGAGTGTTTCCCGTGCTGGCTGGTCTTGGTTTGTCGCCTCACTGGTGCGGTGACGTATATGTGGCTTGCTTCTTCATGTGCTGCCTGGGTGGTGGAAATGCCTGAACTTTCGACTGCTGCTGGGCAGCCGCCGGCATGGTTCAAGAGCAGCTACAGCGGGGACGGCGGCGGCAACTGTGTCGAGGTCGCTCGCGCCGACTCCACCATCCACATCCGCGACTCCAAGGCGGTCGGAGGTCCTCTGCTGAACGTCTCCCATGCCGGCTGGTCTTCGTTCGTGGCTTCACTGGTGCGGTGACTTGTGCGGGGCTTGGCGTATTTCCGTGCCCGGATGGAGGGAATGCCCGAGTCTCCGAAAGTTGCTCAGAACGGCCTGCCGATCAGATAGACACGCAGGTCAACGAGC # Right flank : GAGCTGAGCCACCTCGGCGTCTGGGACACGCCCTGTTCTCCGCGCGCGGGACGGGTCGTCGCGTCGGTGCAGTGCTGGATCGATGTGCGGGCGCGTGATCGGGGACAGGGGTGGGTTCCAGGGGTCGGCGCCGGGGTGAGGGGAGTTGCCGGGGGTGTCGGTGGCGGAGCTTAGTCTTTCGCCATCGTCACAGCGGGGCGGGGCAGTTGGGCTCCGTCCACCGTGCTGTGCCGGTTCCCGGACGGCGAACGAGGCGAGGAACGCATGGGCTGGCTCACGGCAGGCGACGGCTACGAGATCGCTCTGGTGGCGGGCCGTGTGGTGGCCCGCGCCGCTGCGGACCCTGCCGGGGCCGGAGCACCGGGGGAAGGGTCGGCTGGGGTGTCGGAGGAGTTGCCGGAGGCGCTTCGTGACCGTCCCGAGGTGATCGAACTCCAGCGCCTCGCCCAGTGGTTGGAGTGGCACGCGGACGAATGCGCGGAGCGGGTCCGCACCTGGAT # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGGACCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCACGCGGGGATGGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [43.3-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //