Array 1 97636-95104 **** Predicted by CRISPRDetect 2.4 *** >NZ_LRNP01000002.1 Salmonella enterica subsp. enterica serovar Tennessee strain CFSAN001353 contig00002, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 97635 29 100.0 32 ............................. GAATTCGTTATTTTTAAACGAAATCATTATCA 97574 29 100.0 32 ............................. AATGCAACTGCAGTATCCTTACGCCCAAAAGC 97513 29 100.0 32 ............................. GCAGCTATCGATGAGATGAATAACGCGATTTA 97452 29 100.0 32 ............................. TACACACCTAGCAATTAATTACGATTTTGTTT 97391 29 100.0 32 ............................. GAGGGTCGGTGCGCGGTATTAAAACACGCTAT 97330 29 100.0 32 ............................. TACACCAAATGGGGGCCAGCAAAGAAAATGCT 97269 29 100.0 32 ............................. TCGTTTATAGCTGAGAACAAGCTGGCGCTGAT 97208 29 100.0 32 ............................. CGCTGGCGCAACGAGTCGTACCTGTACGCCAG 97147 29 100.0 32 ............................. ATTCGACGCTCAGGCCGTTCTCTTTTAACCGG 97086 29 100.0 32 ............................. CCAAAAACATTGAGTGCTTCTTGTACGTTCAT 97025 29 100.0 32 ............................. CAGTTTGAAGAGCGCGCCCGACAGGAATATGA 96964 29 100.0 32 ............................. TTACAGACCGCTCATTTGTTATAAATATGTTG 96903 29 100.0 32 ............................. CCTGGAATGGTTTAACGGTGCAATCCAGGATA 96842 29 100.0 32 ............................. CTGGCTAATCTGCGTGTTGATGTTGTCCATGC 96781 29 100.0 32 ............................. GTCCCTACAACCGGGACCGCCCGCCCGACCAG 96720 29 100.0 32 ............................. CCGAACGCTCAACGGGGAGTGATCGAGAATCT 96659 29 100.0 32 ............................. CGATCAGGAAATCAAGGAGAAGCGGGTGCGTA 96598 29 100.0 32 ............................. ATGGAGCGCGGTGGTTACATCGGCGTTCCGGA 96537 29 100.0 32 ............................. GTCGGGATCTCGACCTTTTCAATTTCTTCTAT 96476 29 100.0 32 ............................. TTTGCGACATTTATATTAATGATTATAAATAT 96415 29 100.0 32 ............................. ACTTGCTTCATTGACATGCCTGCCACTGCTCC 96354 29 100.0 32 ............................. GCGCGCCATTGCTGAGGGTAAACCGGCGATTA 96293 29 100.0 32 ............................. CCAGCTCAATTTCGCCAACCTTCGCGCTAATG 96232 29 100.0 32 ............................. TCCGTCTCCGCCAACGCCTTTAGCCCATCCAG 96171 29 100.0 32 ............................. CTCTTTGATCTCTCCGTTTGCCGTTGAGTGGT 96110 29 100.0 32 ............................. TTGACCGGACTCGCGGTTATTCAACTAACCGT 96049 29 100.0 32 ............................. TAGAATAATTGTGTTTTTGCTACCAATGGTTG 95988 29 100.0 32 ............................. AATCTTCAGAGGACTCAGATCCTGATTACGTT 95927 29 100.0 32 ............................. CAGGCATAACTACACCTGTCAGGAGCCAATTA 95866 29 100.0 32 ............................. TGGTTACGTATACGCCAGATTCAGAAAAGGCC 95805 29 100.0 32 ............................. ATTCAAAAATTCAATATGAGGTTGGAAATTTT 95744 29 100.0 32 ............................. GTTGTGTGGGTACAGCCGGCCAGCGTCAGCAG 95683 29 100.0 32 ............................. TACGAATAAACAGATTTTTGCGATATCTCTGC 95622 29 100.0 32 ............................. CAAATGAAAAATGGTTTAAAGGAGGTCTGTAA 95561 29 100.0 32 ............................. TTTACCTGGTTCGTCTGGTTCAACTATATCGA 95500 29 100.0 32 ............................. ATCGAATGCTTTTGTGTGTTCTGCTGCCACTT 95439 29 100.0 32 ............................. GGGGCGTCACCATTTTTGAATTTATCAGCCGC 95378 29 100.0 32 ............................. ACCAGGCTACCCGCGCGGTAGTTCGTCGACAG 95317 29 100.0 32 ............................. AGCAATGATTGAAAAGCTGGCGATAAACAAGG 95256 29 100.0 33 ............................. ATAAATCTAATTTATTTGATTAGTAGTGCTAAA 95194 29 100.0 32 ............................. TCGCACAACGCCTGGATATCCGCCCATCGGCC 95133 29 96.6 0 ............T................ | A [95106] ========== ====== ====== ====== ============================= ================================= ================== 42 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGCACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 115629-114259 **** Predicted by CRISPRDetect 2.4 *** >NZ_LRNP01000002.1 Salmonella enterica subsp. enterica serovar Tennessee strain CFSAN001353 contig00002, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 115628 29 100.0 32 ............................. CGCTACGAACTCTGGCAGAAGAGAGCGTTTAT 115567 29 100.0 32 ............................. AACGCTACCACCCGGCAGTAAAAGAGCCGACG 115506 29 100.0 32 ............................. CAGAACAGGAGCACGTTAGCCGCGTTGCTGAA 115445 29 100.0 32 ............................. GCATTCTTTCAAACGTTACTTCTGCTCGCGCC 115384 29 100.0 32 ............................. TTGTTGCAGGCGGGAGAACGCAGCGCGTACCC 115323 29 100.0 32 ............................. CCTGCCGTCGCCGTCGCCATATCCGGCGCTGT 115262 29 100.0 32 ............................. CCTGCCGTCGCCGTCGCCATATCCGGCGCTGT 115201 29 100.0 32 ............................. GGCCACTTATCAGCAAACCGGGCATCCAGAAC 115140 29 100.0 32 ............................. CGAGTCAACAGCGGTAGCCATTGCAGGCATTT 115079 29 100.0 32 ............................. GTTTGCCGTATCTTCGATCATACCGGAACGGT 115018 29 100.0 32 ............................. CTACCAGGCCCGTTTGTCTCAACCATGACCAG 114957 29 100.0 32 ............................. CCACGACTAACCGGTACTAATCCTGAGTTCAT 114896 29 100.0 32 ............................. TATGAGTTTTCAACATCACCAACTAGTCATGT 114835 29 100.0 32 ............................. GCCAAACAGGTTGAGATAGGGCTTCATTATGA 114774 29 100.0 32 ............................. ATGGAACAGGCCCAGGCTGCGCAGCAGCAACA 114713 29 100.0 32 ............................. TCAATAAAATCAATGATAAGCAGTGTCGTTAA 114652 29 100.0 32 ............................. AGAATCGCCAGCGGAAAGAGAAGGGGTTAGCG 114591 29 100.0 32 ............................. CGGGAGCACGGGTGTTGCAGCATTGCAGGAAG 114530 29 100.0 32 ............................. TGCGGCGCGGTAGTTGGCCTACATGATAGCCA 114469 29 100.0 32 ............................. GATGATCGTTTTTTTCGTTACGTCGCGCAAAT 114408 29 100.0 32 ............................. CACCTCAGATGTTTGGGGTGCAATTTGTAATG 114347 29 100.0 32 ............................. AGCGGCTAAACCTGCCGGTTATCGCTGAGCAG 114286 28 89.7 0 ............T...........G-... | ========== ====== ====== ====== ============================= ================================ ================== 23 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCACCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAACCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGGGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //