Array 1 26221-24602 **** Predicted by CRISPRDetect 2.4 *** >NZ_QQGU01000021.1 Neisseria meningitidis strain M22838 M22838_HUY1102A26_cleaned_ctg_31565, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 26220 36 97.2 30 ........G........................... GTTTCTTCCCATATACTGCTGTTCAAACCG 26154 36 100.0 30 .................................... CTTCCGTGAGATACATTTCCCAATCTTCTT 26088 36 100.0 30 .................................... TGATTTGCTCGACAGGTGAATAGCCATAAA 26022 36 94.4 29 ..................................TA ATTTAATACGGCGACCATCTCGTGCCAAG 25957 36 100.0 30 .................................... TCATCAATCGCCCACTCAAACCCAAGCATA 25891 36 100.0 30 .................................... ACGGCGGTGGAAACGGTTTTCATAAAATTT 25825 36 100.0 30 .................................... GCCTCACAAATATCGTCAATGCTTGCGCGA 25759 36 100.0 30 .................................... TGCCACTTGATGTTTTAGCCATAGTGTTCT 25693 36 100.0 30 .................................... TGCGAAGCGAACACCCTGAACAATGCCGAC 25627 36 100.0 30 .................................... CCGCAAAGCAGCCGAAAAAGCCGACAGGAA 25561 36 100.0 30 .................................... CATGCCGTCGGGCGGTGTTGTAAATTTTAA 25495 36 100.0 30 .................................... TGACAAATAAAGCACGATTGTTGCAAAAGG 25429 36 100.0 30 .................................... CCAACGGATAAAATTACGCCCAAGCACCTG 25363 36 100.0 30 .................................... GTATTGAGCGTCAAGTACTCGCCATTCGAG 25297 36 100.0 30 .................................... TGAAGGTTCGATAATTCGACCTGAAAAACG 25231 36 100.0 30 .................................... TGAAGGTTCGATAATTCGACCTGAAAAACG 25165 36 100.0 30 .................................... TGAAGGTTCGATAATTCGACCTGAAAAACG 25099 36 100.0 30 .................................... TGAAGGTTCGATAATTCGACCTGAAAAACG 25033 36 100.0 30 .................................... TGAAGGTTCGATAATTCGACCTGAAAAACG 24967 36 100.0 30 .................................... TCACTCTAAAAATCCGATTCTACCACCGCT 24901 36 100.0 30 .................................... TTGGCTCGTCTGCTGCCGTCAATCGTGCGC 24835 36 100.0 30 .................................... TAGATTGCCTCATATACGCCGAGCGGGTAG 24769 36 100.0 30 .................................... CAGGTCGTGCTGGAGCAGGCCGACGATTTT 24703 36 100.0 30 .................................... CATACAGTTCATCTTCACCTGCAATCAGGG 24637 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 25 36 99.7 30 GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Left flank : CCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCT # Right flank : ACCCCAACGGGAAATCCTTATTCTATAAGGATTTCCCGTTTTATTTAGTCTGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACATAGTCTATTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGCTGGAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATCGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACACCGGCTTGAAATGACGAAACCATTTTGTCGATGGCAGCCAAGGTG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //