Array 1 1708416-1711992 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP018059.1 Moraxella catarrhalis strain CCRI-195ME chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =================================== ================== 1708416 28 100.0 32 ............................ TCTTGTCGCTTTTGCTCATTTGGGTTTATACC 1708476 28 100.0 32 ............................ TTATCAGACGCTTACACAGCGTTTAAAGCCGA 1708536 28 100.0 32 ............................ AAAACCCCAGCCAAGTGCTGGGGTTTTATGCT 1708596 28 100.0 32 ............................ CTGTGATGCCTTACCTCGCACGGTGTCGGTCA 1708656 28 100.0 32 ............................ CCTGACAATGTCGGATTTATCAATGTGGTGGG 1708716 28 100.0 32 ............................ TGTAAATCAAGCTCAATTTCATGATTGCCTAA 1708776 28 100.0 32 ............................ AGTCAGCACCGCTTTGATGATTGATAAGATAG 1708836 28 100.0 32 ............................ AGCTTGATTAAGTCCCATTTGTCATCGAGCAT 1708896 28 100.0 32 ............................ ATCTAATGCAGACTGCGGCAAATTTGGCGTGC 1708956 28 100.0 33 ............................ CTAGAATAAATGCACCTATTGCCATTCTCTTTA 1709017 28 100.0 33 ............................ CTGTGCAAGTGCTGTGGTAAAATTTGCGTCGAC 1709078 28 100.0 32 ............................ AAAAGGATCGGGCTATGATCTCTTAGGTGCTT 1709138 28 100.0 32 ............................ TAAGCTATGCAGGCGGTCAAGCATATGACAGC 1709198 28 100.0 32 ............................ TTCAGTAGTGATTTTACTGTCAATAGCTGCAA 1709258 28 100.0 32 ............................ TGGTGATGTGCTATATGCTAAGTATGTTTGAT 1709318 28 100.0 32 ............................ ATTTGCCATCAGAACCTTTGACGGCGTTCATA 1709378 28 100.0 32 ............................ CAGCGGCTCTATGGAGCGATGTACACTAATAA 1709438 28 100.0 35 ............................ CCAGTCGCTCAGTAGCGAGTTAAGTTTCAGTTTCA 1709501 28 100.0 32 ............................ TCTTATCATTTTTATGATGCAGTGACACGCTT 1709561 28 100.0 33 ............................ TAATCCCAAGACCTGAGCAAGTCTTAAAACTGC 1709622 28 100.0 32 ............................ AATCTGTCCAGTCTGATGTATTGCCCAGTTTA 1709682 28 100.0 32 ............................ TTGGTTTTCATGATACGCGTCACGAAGCAATT 1709742 28 100.0 33 ............................ TACTATACCTGATTCTTATTCTGTGAATTATGT 1709803 28 100.0 32 ............................ AACTTTTTCGTAATGCAAATTAAGCAGTTCTG 1709863 28 100.0 32 ............................ ATACGCATCAAGCAAGTGACATCGCTGATCTG 1709923 28 100.0 32 ............................ AATTATATTACAGTTGTGAACAGTCGAGAAAT 1709983 28 100.0 32 ............................ TTGGTGCAACATTAGAGATGACCACTTTTGTC 1710043 28 100.0 32 ............................ TAGAGGGTTCGTAGTCTTCCACTGAAATAGTC 1710103 28 100.0 32 ............................ TGCTTGTTCACGCCCTGCCTGTGGACTAAAGT 1710163 28 100.0 32 ............................ ATAAGGCTACCGCTCCACACCCATTCGGTCAT 1710223 28 100.0 32 ............................ TGATAAATCTACACCACGATTTTGTAATTCAT 1710283 28 100.0 32 ............................ CAGCTGGCAGGCAAAGCAAGCACAGCGTCAGT 1710343 28 100.0 33 ............................ TGTTGATGCTCCTATGTCGTATAGCACCCCGTC 1710404 28 100.0 32 ............................ AAACAAGTCGATAAGATTATTGAACCACTATT 1710464 28 100.0 32 ............................ GACGATTACACGGCTTGAAGTATTTAGCCGAT 1710524 28 100.0 32 ............................ AATCAAATATCTGCTGATGAGATAAAACAAAC 1710584 28 96.4 32 ...........T................ CACCCAAAGACATTTCAATTCAGTTACTTAGA 1710644 28 100.0 32 ............................ CTGCAAATCCTCTGGAGCTGCTGTCCAGTCTG 1710704 28 100.0 31 ............................ AAATAAATGGCTTCTGTAGCGTTAAATCGCT 1710763 28 100.0 33 ............................ ACTTACTGAGCTTTCAACAGTATTAATCCGTCT 1710824 28 100.0 32 ............................ AGAATACTATGACCAGATGAAGCTCATTATGA 1710884 28 100.0 33 ............................ CTATTTACCCACCTTTCGTGAGAAGCCTATCGG 1710945 28 100.0 32 ............................ ATCGGTCGGTCATGGCGGTAAGCTAATTTTGG 1711005 28 100.0 32 ............................ TGTTGATACCTTACGCCTAGAATTCCCCAACG 1711065 28 100.0 33 ............................ CATGTTCTCAGTGATAACACGCCCAACCACAAT 1711126 28 100.0 32 ............................ AATATCAATATCATGTACAGTTTTCATTAAAT 1711186 28 100.0 32 ............................ TAGGCAATGAGCCTGAAGTCAAAACATTCACC 1711246 28 100.0 32 ............................ ATAATGAACAAATGAATATTATTCCGCTTGTT 1711306 28 100.0 32 ............................ CCTAATTCAATCGATTCAAAACCAAAAATATT 1711366 28 100.0 32 ............................ ACTGTAGATTATCAGGAAGACTGGGTAATGTT 1711426 28 100.0 32 ............................ CACACACGCACATCATTTCAATAGATTTTATT 1711486 28 100.0 32 ............................ AATATCAATATCATGTACAGTTTTCATTAAAT 1711546 28 100.0 32 ............................ TAGGCAATGAGCCTGAAGTCAAAACATTCACC 1711606 28 100.0 31 ............................ AAAAACCGTTGTGGATAAAATCGCTCCTCTA 1711665 28 100.0 32 ............................ TGATGAGTTTGAGTTATACGCCATAAAGCCTG 1711725 28 100.0 32 ............................ GAAAACATGGGCTTTTTATCGCCGTGCGGACT 1711785 28 100.0 32 ............................ ATAATTAACAGTTGCACAACCAATCTTAAAGA 1711845 28 100.0 32 ............................ ATTGGGAATTATTAAGAGTTTGATCAACAGTA 1711905 28 100.0 32 ............................ ATTGACTGAATTTACCGCAGTTTCAATCGTTG 1711965 28 96.4 0 ..........A................. | ========== ====== ====== ====== ============================ =================================== ================== 60 28 99.9 32 CTTCACGACCGCACAGGTCGCTTAGAAA # Left flank : TGCCTGTGCCAAGTAAAATGACCGTCGTGTTGGCGATCGGAATATTATAATAGTGGTTTTGGTATTTCGTTTCGGTCAGGTATAAGATACGCCCATCTTTTTGCATGACTCGGCAATGCTCAAGATAAAATAAATTCGCCCGTTTGGAGTGTAAAATTGCTTTCAAATCGGTCGGTTTGAGCGTATTCATAATAATACAAATCCATGTTTAATGATTCAATTTTATCCTAACAATTTTCAACATCATTTAATATGATTTTATTGGATTATAAACTAAAAATAAATTTATACCAATCATTTTTTAATTGTATTTAGCGATTAAAATGTTTTAAGATAACTCAACCAGAAGATGGAAAAATAACTGATTGACCCTTTATTTTTTTACTATTTAAAAACTTGAATATTTTCAATAAGTTATAACATGAAGATTTTTGATTGGGTTTTTGACAAATTTTATCATAATGACTTGTTATTTCTTATTATTTTGGTTTATACTAACT # Right flank : ATTTTGTTCTATGGCTACGCTGATTATTTAAAATTTTTGTGCCAATCCCTTGAAAATTTTATCCTTAACCATTATGAAGATGGGGAATTTATATTAACTTTTTTGGGGCAATTTATGACCGAGCAAACCACCGAACAAACCACTATGGAAGAGATTATGGCTGAGACGACAACCGAGCAAGTCGAAGCACTTCATAGCCAAATCCAAGCGCTAGAAAATGAAGTCAAAGAAGCCAAAGAGACTGCTGCGCGTGCCAATGCCGAAAGCTATAACGCCCAACGCCGCATGGAACAAGAAACCGACAAAGCCAAAAAATTTGCACTACAAAAGTTTGCCAAAGAGCTTTTGGAGGTGGTTGACAACCTAGAGCGTGCCATTAAAGATGCTGAAGAGACAGGTGCAGATGACGCATCACTTGAAGGTATTCGCCTAACACATAAAGTACTGCTTAGCGTTCTTGAAAAAAATGGCGTCGTGGCCGTGGGTAATGTCGGTGATAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACGACCGCACAGGTCGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTTCACGACCGCACAGGTCGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.40,-7.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //