Array 1 212739-214150 **** Predicted by CRISPRDetect 2.4 *** >NZ_QQMV01000001.1 Neisseria lactamica strain M37142 M37142_HUY4067A186_cleaned_ctg_8121, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 212739 32 100.0 33 ................................ GTTGTACTCCATCGCGGCGCACAGGATTACGCC 212804 32 100.0 35 ................................ TTCCATAATTCGGCCTACAGTGCTTTCTTGCTTAG 212871 32 100.0 34 ................................ TTTGAAAATAAAACCTTGCCGGTTAAAGACAAAA 212937 32 100.0 34 ................................ GCTTTTTCTGGTGGTAAATGTCGCTGCTGCGTCG 213003 32 100.0 34 ................................ TCTTGTTCTTATTGGAGAATTTTCAAAAAATCAG 213069 32 100.0 34 ................................ AAATCGGGGGCGGGGTCGGTGTTGGGGCGCGTGC 213135 32 100.0 33 ................................ AGCGGCAAACCGAAAGTTTCATACTCTTTCGCG 213200 32 100.0 33 ................................ AGATTATAGGGGGCATAAATTCAAGTCGGTTAA 213265 32 100.0 34 ................................ TTGTGCGTACCGACAAAAGCACGAGATGCATTCA 213331 32 100.0 34 ................................ TTGTGCGTACCGACAAAAGCACGAGATGCATTCA 213397 32 100.0 33 ................................ TTGACATATCGGATTTAAATTTAAAAGACCCTG 213462 32 100.0 33 ................................ GACGCATCCCGCGTCGTCCCCACCGCCGACGAA 213527 32 100.0 33 ................................ CAAGACTGGATATTTGAAGAGGTTATCCCTCAA 213592 32 100.0 34 ................................ AATAGATACAATCGAGCATCGGGGCGACGCATAA 213658 32 100.0 35 ................................ AAGCATTGGGAAATGCGGCTGACGGATTTTTTTCA 213725 32 100.0 33 ................................ CTGGGCATTAACCTCCACTATCTACCAATCAAG 213790 32 100.0 33 ................................ AGAACAACAAAGGAGGATTTGAACAATTAATAA 213855 32 100.0 34 ................................ TCTCAATTGACTTGCCGCTTGTGGATATGCGGTC 213921 32 100.0 35 ................................ CGAAAACGGTATTAAAAACTATGTCTGCTACGGAG 213988 32 100.0 34 ................................ CAGATTGGAAGTGCCTTAGGTTATAAAAATCCAT 214054 32 96.9 33 ......A......................... ATTAAAAAACTTTTTTCGCGGTATGCTTCGGGT 214119 32 93.8 0 ......................A.A....... | ========== ====== ====== ====== ================================ =================================== ================== 22 32 99.6 34 TCAGCCGCCTCTAGGCGGCTGTGTGTTGAAAC # Left flank : CATGGAGGGACAAGAAAATGCTGATGTTGATAACTTATGATATTTCGTTGGAAAATGCCGAAGGGCAGGCAAGGCTGCGGCGCGTAGCGAAACTGTGCCAAGACTACGGCGTGCGCGTGCAGTATTCCGTGTTCGAATGCGACATCGCACCCGACCAATGGGTAGTTTTAAAAGACAAACTTTTAAAAACCTACAACCCCGAAACAGACAGCCTGCGCTTTTACCACCTGGGCAGCAAATGGCGGCGCAAAGTGGAGCATCACGGCGCAAAACCGGCGGTCGATATATTTAAGGACACGCTGATTGTGTGAATCGCCAACCTGTTGTTCCCATAAAAATGCGGCAGGGTTGGCGAATCTGGGTTGTTCTTTAACAATCAGGATATTGCAAATGTGGATATGGCGGATAAGGCTGTGCTATACTCATGTTTGTGCTTTTTTCGGGAGTTTGGCGAAGTCGGGGCTGCGAAGCCTGATGTAGTAAGGCTTTCGGAAGAGGCT # Right flank : CGGCGCGGACGACATCTGTTTCCTGCGCGAGTAGGGTAAAGGACAATCTAAATTCCCCCGGCAGCTTAAAATCTTGCCGGGTCTGCACAAAAATGCCGTCTGAACAGGTTTCAGACGGCATTTTGTTTCAATCGGGAATATCTTTGTTAAAAAACGGCTTGATGTTATCTGCACATATTAATATAATGATAATTATTATTAATCAAATATGGAAAATAGTAGGGATGTGTAAACCGAATTATGGCGGCATCGCCTTATTGCCCTTACTTTTGGCATCTTGTATCGGCGGCAATTTCGGCGTGCAGCCTGTTGCCGAACCAACGCCGACCGCGCAAACCCCGTCAGATTCCAAACCGTCCAAACCTGAGGACGTTCCCACTCCGCCTCCTGCCAAACCCTCTATAGAAACCACGCCGGTCAATCAACCCGCCGTCGGTGCGGCAATGCGGCTGCCAAGGCGGAATATTGCTTTTTATAACAAAGACGGTACAGAAATTCCC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCAGCCGCCTCTAGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched TCAGCCGCCTCTAGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.90,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 200023-200586 **** Predicted by CRISPRDetect 2.4 *** >NZ_QQMV01000004.1 Neisseria lactamica strain M37142 M37142_HUY4067A186_cleaned_ctg_8127, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 200023 36 100.0 30 .................................... AACAAATCTTTATTTCACAAGCAGTTCGAT 200089 36 100.0 30 .................................... TCTTTTTTTTCTTCTTCGGGCATCTCTCCG 200155 36 100.0 30 .................................... CATCGCCGGCGGAAAAATCAAATTAAGCCT 200221 36 100.0 30 .................................... CGCAGCCGTAGGCAGGCTGTTTCAGCGGTA 200287 36 100.0 30 .................................... TACAAATCTTTCTGGACGTCCTCCCCCTGC 200353 36 100.0 30 .................................... ATTTGCAAGCTAACCTGACCACAATCAAAA 200419 36 100.0 30 .................................... GCGAATTAACATCATAAAGTCATTGACAAG 200485 36 100.0 30 .................................... AAATTCAATCTGACGCAATTCTAGACGCAC 200551 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 9 36 100.0 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : TTTATTTTCAATTTTATGTTGAACTTTAAAGCAGTTTCGCAGTGCTGAAATTCCGCCCGAGCCCTTAAACCATACACGGCAGATGCCGTTCACAAAGGCGATGTGCAACTTTGCCCGAAACAGTCCGCCTTTACCCTTACAAGGACGAACAGCAAAAGACGGAACAGCCCGTACAGTCCGCGAAAGCGGAAAAACCCCAAGTTTTAGCAATGGATGCGGCAAAATAGAAAACCGCCCTTAATCGGGCGGTTTTGGCGGTCTATTGACTTAAAAGCACAATCAAGGCTAGAATAACCCCAGCATCAATCGTAACAGTCAATTGCAAAGTACCTACGCTAATAGAGATTTGCATTTTGATGTTTCCTGTGAAGTTTCAAAACTTGGCAGGAATGCAAAAATCCCCTTGTTCTCAGCTTGGGGATTTTTGTTTGTCCCCGCCGATTTTTTAAAATCCGCGCCTCTCGCGCCTGAACCTATCTCATAAAGTTCCTTATATATTA # Right flank : TACCCCAACGGGAAATCCTTATTATGTAAGGGTTTCCCGTTTTATTTGTTCTGAAAAAATGGGCTTAAAATAATAATAGTTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGCAGGTTTGCACACAGCCTGTTGTGGTGTTTTTGCAACGAATCTCGGCCTTTGACGATACGGCTGTATACGGAAAGCTGGAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATCGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACACCGGCTTGAAATGACGAAACCATTTTGTCGATGGCAGCCAAGGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : NA //