Array 1 636-180 **** Predicted by CRISPRDetect 2.4 *** >NZ_QXHI01000336.1 Escherichia coli strain PS00210 NODE_337_length_734_cov_6.757825, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 635 29 100.0 32 ............................. GCCTGGCGATTTCTCGTCAGGCCTTGCGGTGT 574 29 100.0 32 ............................. TCAGTAAAGCGGCGCCCACTGATATCGGATTA 513 29 100.0 32 ............................. AGGGGCAGGGAGTGACGCTGGAGCAGGCGATC 452 29 100.0 32 ............................. GGAAATTAGGCAAATGTGAACACGGCGGCCCC 391 29 100.0 32 ............................. CCAGTATTTTGTCGTGGATTGCGGGATCACCA 330 29 100.0 32 ............................. TTGAGTTTGTTCGTAACAACGCGGGTCATCTG 269 29 96.6 32 ............G................ GGTACAAAAGAGGCCCCATTCTGGCAGGGCTC 208 29 89.7 0 A...............T...........A | ========== ====== ====== ====== ============================= ================================ ================== 8 29 98.3 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTGTAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAG # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTCGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCCCCATGCCAGATAAGTTCACAATTATCGATACAAAAAATCAAATTTAATCAAAGTGTTATTTGTATAATCCTTAAACCGTTAAGA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 5850-6488 **** Predicted by CRISPRDetect 2.4 *** >NZ_QXHI01000015.1 Escherichia coli strain PS00210 NODE_15_length_49371_cov_9.642170, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 5850 29 100.0 32 ............................. CACACCGGTGCGACGGGAAACGTTCAGCGGCC 5911 29 100.0 32 ............................. GGAATAGTTAATTTCGGTGATGGCTGCGTAAA 5972 29 96.6 32 ............G................ AGTAATGCTGCGTTGAGATGACCAGGCGGGCT 6033 29 100.0 32 ............................. TTGACGCCAGCGGCGACCCGCGCCACGGGCTT 6094 29 100.0 32 ............................. TAGCCAGACGTACTCGCAATCTGTCGGCGGTC 6155 29 96.6 32 ............................A CCAGTTCTCCGTATTCTGTGGTTATCGTTGCT 6216 29 100.0 32 ............................. GGAGTTCAGACATAGGTGGAATGATGGACTAC 6277 29 93.1 32 ............TT............... CCCGGTAGCCAGGTTTGCAACGCCTGAACCGA 6338 29 96.6 32 .................A........... GCAACGACGGTGAGATTTCACGCCTGACGCTG 6399 29 96.6 32 .T........................... GGCGCACTGGATGCGATGATGGATATCACTGA 6460 28 75.9 0 ..A........C..T....A..-.C...C | T [6479] ========== ====== ====== ====== ============================= ================================ ================== 11 29 95.9 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGTGCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGGAGATGCACAGCCTGTTGCCATTCCGCTTCCTGTTTCACTGGGAGATGCAGGCCATCGGAGTAGCTGAAATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGTAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTATATGTAGGTGATGTATCCGCAAAAATTCGTGAAATGATCTGGGAACAAATAGCTGGACTGGCGGAAGAAGGCAATGTAGTGATGGCATGGGCAACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACCCCGGTAGATTTGGATGGTTTAAGGTTGGTGTCTTTTTTACCTGTTTGAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTCAGAACAAATGTATACTTTTAGA # Right flank : CAGCTCCCATTTTCCAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCCGGGAAGGCAGGTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAATTAAGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTTTCGGTGTCACTCATCCGCT # Questionable array : NO Score: 5.85 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.79, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //