Array 1 842266-840371 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP072185.1 Riemerella anatipestifer strain 20190109E1-1 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 842265 47 100.0 30 ............................................... GCATTTTCATCGCTTATATATTTAGGAGTT 842188 47 100.0 30 ............................................... GCACCTATGTGGCATGATACAGAAGCTAAT 842111 47 100.0 30 ............................................... TACGTTCCACCGCTTTTCTTTTTAAATCCC 842034 47 100.0 30 ............................................... GCATGATCCCAAGCTATGTACGCTCCTGGA 841957 47 100.0 30 ............................................... TAATATTATGAACATTTGTAAAATCCTTAA 841880 47 100.0 30 ............................................... TCAACTATTCAGCAAATGTAGACGATACAG 841803 47 100.0 30 ............................................... AGCACGATAGAATTATGCTCATTGAGTTAA 841726 47 100.0 30 ............................................... TACGTTCCACCGCTTTTCTTTTTAAATCCC 841649 47 100.0 30 ............................................... GCATGATCCCAAGCTATGTACGCTCCTGGA 841572 47 100.0 30 ............................................... TAATATTATGAACATTTGTAAAATCCTTAA 841495 47 100.0 30 ............................................... TCAACTATTCAGCAAATGTAGACGATACAG 841418 47 100.0 30 ............................................... AGCACGATAGAATTATGCTCATTGAGTTAA 841341 47 100.0 30 ............................................... GTATAAAAGACCAAGTGGAGATTACCCATA 841264 47 100.0 30 ............................................... AATTAGTTAATTCTCTGGGCGAGGTAGTTT 841187 47 100.0 30 ............................................... TTTCGGTTGCTATCCGAAACGATTCGGATC 841110 47 100.0 30 ............................................... GAGGTGTTGTCATATCTCAATCTCGTCTAT 841033 47 100.0 30 ............................................... TACTTCGTTTATTAGTTTTATTGCAATGTT 840956 47 100.0 30 ............................................... TAGATACATCTCTTTATCTTCGTGTAAAAT 840879 47 95.7 30 ........T...............G...................... GTCTTTGAGGTAAGGTTTTGTCAAATCCCA 840802 47 95.7 30 ........T...............G...................... TAATGGAGATTATAATATCCAGATACAAAC 840725 47 95.7 30 ........T...............G...................... TCTATCGAAGTGTTTAAAAACACTTGATTT 840648 47 95.7 30 ........T...............G...................... GATATAGTATCAGATGAACCGACAACGGAC 840571 47 95.7 30 ........T...............G...................... TGATTGACTCTATTTTCTCCTGTGCAGATA 840494 47 95.7 30 ........T...............G...................... TTATTAAAAGTTTTCCGATACTTCCTATGT 840417 47 93.6 0 ........................G..................T..T | ========== ====== ====== ====== =============================================== ============================== ================== 25 47 98.7 30 GTTGCGAACTATCACAAAGATAGTAAAAATTGAAAGCAATTCACAAC # Left flank : CTGTTTATAAATGTTATACTGGAGAAAAAAGACAAATATCTGTGCCTGAGTTTTATGAAGTTTAATCGTTTTAATGCTTATAGAGTTATGTGGGTTATGGTGTTATATGATTTACCAACAGAAACCAAAGCGATGAGAAAAGCAGCTCAACTTTTTAGAAAACGCTTGGAAGATGATGGGTTTAGTCTTTTCCAATTTTCCATTTATATACGGCATTGTCCTAGTCGAGAAAATGCGGAAGTACACATCAAAAGAGTAAAATCAATACTTCCCAAGCATGGCAAGGTAGCTATAATGAGCATTACAGATAAACAGTTTGGAGATATTGAAATTTTCTTTGCGAGAGCTAAAGAGGAACCAAAACCAACCTATCAGCAATTAGAACTTTTTTAGGAATAGAAAAAGACTTTACATCAAACAAAAATAGAGAAGAAATAGTAAAAAATCTAATCCTATAAAAACGCAAAACCCATTGAAAAACAATGGGTTTATTTTTTGAG # Right flank : ATTACTGTTTGTTATTGGTTTTATTTTTTAAGATATAAAACACGCTTCCAATTATGTAAACCGACACAATTAAATTAGATACTAAATTAAAAATCCCTATACTCCCAAAATCCATTACAATGTAGTAGGAATTATAAATGATATAAAAAATAGAAAATACAATAAGTATAAAATATAGCATAGAGTTTTTCATTTTTATAAATTGCAAGCTGTTACAAAGATAAAAAAAGAGCTACCTCCAAGAGGTAGCTCTACGTTTTTAAATTGAGATATTCAGTCTACTTTAAAGTAATATTGTCTATTTGTACAGTAGTAGTTACAGTAGTGTTACCTGCATATTCAAAAAAGATATAACCTTTTCCTGTAGCAGGAATTGCAAATTCGCCACTATCTACCCAATCGGCAGCATAGCCATTAGTATTTTCTTTTGAAAGAGTAAACTTAGAAGTAATATCTATTAGGTCGGTTTTATTTACAACTCCGCCAGGTGTATATTTCGT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGAACTATCACAAAGATAGTAAAAATTGAAAGCAATTCACAAC # Alternate repeat : GTTGCGAATTATCACAAAGATAGTGAAAATTGAAAGCAATTCACAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.09%AT] # Reference repeat match prediction: F [matched GTTGTGAATTGCTTTCAATTTTTACTATCTTTGTGATAGTTCGCAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.70,-6.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [4.87,4.91 Confidence: LOW] # Array family : II-C [Matched known repeat from this family], // Array 2 1691221-1692574 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP072185.1 Riemerella anatipestifer strain 20190109E1-1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================== ================================================================================================== ================== 1691221 21 95.2 44 ................G.... GAGAGCAGTCCCAACATCGCTGTATTTCAGGAAAAAGGAAAGCG Deletion [1691286] 1691287 21 100.0 95 ..................... CTGTGCATTCACGAACTCCATTGAAAATACAACAAAGCTGTGAGCTAAACTGAGAGCAGTCCCAACAAACATTTTTTGCATCCGTAGATGAGAAA 1691404 21 100.0 95 ..................... TTATGCATTCACGAACTCCGCTGAAAACAACAACGAAGCAGTGAGTAAAATGAGAGCAGTCCCAACAGTTTTATTTGGATTGTTCAAGATACGAC 1691521 21 100.0 94 ..................... TTATGCATTCACGAACTCCATTGAAAATACAACGAAGCTGTGAGTAAAATGAGAGCAGTCCCAACAGTTACTTTTGCGAGCAATAGCCCTGCGA 1691637 21 100.0 95 ..................... CTATGCATTCACGAACTCCGCTGAAAATACAACAAAGCCCGTGAGTAAACTGAGAGCAGTCCCAACCAGAGCCAAAATTTTAGACTATTGTTATC 1691754 21 100.0 94 ..................... CTATGCATTCACGAACTCCGCTGAAAATATAACGAAGCGTGAGCTAAACTGAGAGCAGTCCCAACTGATAGAATTTTCGGTTTGCTAAGAGCGG 1691870 21 100.0 95 ..................... TTACGCATTCACGAACTCCGCTGAAAACACAACAAAGCTGTGAGCTAAAATGAGAGCAGTCCCAACGCAGTAGAGAATTAAACTCGCAAGAATTA 1691987 21 100.0 44 ..................... GAGAGTAGTCCCAACCTTTCAGCCTATCTTTATTTAAAGCCATT Deletion [1692052] 1692053 21 100.0 44 ..................... GAGAGTAGTCCCAACGTTCCCTTTATAATTTTCTTCTGCTTCAA Deletion [1692118] 1692119 21 100.0 44 ..................... GAGAGTAGTCCCAACACTTACTTTTGATACAATTGAATACGAGT Deletion [1692184] 1692185 21 100.0 45 ..................... GAGAGCAGTCCCAACGGTACAAAGATTATAAATCTTCATTGGTGG Deletion [1692251] 1692251 21 100.0 97 ..................... CTGTGCATTCACGAACTCTGCTGAAAACTACAACGAAGCCGTGAGCTAAACTGAGAGCAGTCCCAACAGTTTACACCAGCAAAAGGGACAAAAAGAT 1692369 21 95.2 98 .........C........... CTTAAGCATTCACGAACTCCGTTGAAACAACAACAAAGCTTGTGAGCTAAACTGAGAGCAGTCCCAACGCAATGAAGCCATATATTGATATTGCAGAT 1692488 21 95.2 44 ...................A. AGAGCAATCCCAACTAGATGAAAGTGGTAATCTTAACTTTGTTC A [1692504] Deletion [1692553] 1692554 21 100.0 0 ..................... | ========== ====== ====== ====== ===================== ================================================================================================== ================== 15 21 99.0 74 GTTGTGAATACCCTTCAAATG # Left flank : CATTAAAATAGATGGCGACAACCCTAAAAATGGTATCGTCTTTAAAAACTTAGACAATCAAAATGAGGTAAAGCTCTCAGCAGAGCATATTGTGCTTAATGAGCCGTCAAGGTTACTCATTCTCGTTCCTACAGATTTAGAAGCAGGGAACTATGAACTCAGCATCACCACGCAAAGCAGTAAAGGCACTACCTTATTGAAAGAACCCCGCACCGAAACACTAAGCACACCTATTACTATTGTGTAGTGTGTTTTTGGTACTTCTAAATAAAGACCGCCCTTCCTTAGTACTAAGGAAGGGCGGTCGCTTTATAAGAGGAAGCTACTTCACTGCCTAAGGCGAAGGCTCTTCTCTCGGTAAGGAGAAGAGCCTTCCCTCGTACGAGGGAACCGACTTCGTCTGTACTAAGGAAGTGAGGTATTTTCTGTAATAGAATCAATAGAAAGCAAAAATCCCTGCTCTGTACCGTACAGAGCAGGGATTTTTTTTGCCCTCAGGT # Right flank : GCTGTGCATTATCGTTATGATAGGGTATTGTCTTTTTTGGGTGCTTGTTTTATCTCGGTGTTTCAAAGAACGCTTTTCTTTACATCGCTTTTAAATCGCGTTGTTCTATTTTTAGGCATTGCCTAATGCTTTGGCTCAACATCTGATGCAGCTGCTTCATTCTGGTAGCCGCCTCTTCGTTTTTTAGTCGGAACTCCGCCTCGGTGCTGTTTTGTTCTGCAAGTAGGAGCTTATGAACGATACTACGGTACTCAAAAAACTTTTTGGTGACTTCCTCAGATAAGAAGAGCCCACAGCCCTCCCCATAAAATAGTTCTGGGAGTTCCCTTAGAAAGGCTTGGGCATTGGCTCGGTTAATATAATGAATTTTATCCTTTTGCCCTTTGGGAACTTCCCATTTTAAGAGGTTTTTGGGGTTGTCTTGGTCGGTCATATACGCCAGCAGACGGTACATCTGCTTATGGGCATGGAGTATGGCCTCGTACTTTTGGCGTTCAATG # Questionable array : NO Score: 2.54 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:-0.5, 7:-2.91, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGAATACCCTTCAAATG # Alternate repeat : GTTGTGAATACCCTTCAAATGAGAGTAGTCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [6-21] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //