Array 1 14827-15039 **** Predicted by CRISPRDetect 2.4 *** >NZ_SUPQ01000020.1 Dermacoccus nishinomiyaensis strain TSA37 NODE_20_length_16350_cov_63.105159, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 14827 29 100.0 32 ............................. GACCCGCCCGCCCTGGTGGACCCGCCGACGAA 14888 29 100.0 31 ............................. AAGCAGATCGAGAAGTTGAAGCAACTCGTTG 14948 29 96.6 31 ..........................G.. CCGCCCAAGCAGGTCGTCAAGATGATGCCCG C [14957] 15009 29 79.3 0 C.....................CC..GTT | C,A [15018,15032] ========== ====== ====== ====== ============================= ================================ ================== 4 29 94.0 31 GGTCGGCCCGCGCACGCGGAGATGAGCCC # Left flank : GCCTGGCCGCAACGTCGCCGCGAAAGCGGGCCTCAACCGTTCCATCCTCGACGCGAGCTTCGCCGAGATGCGACGACAACTCACCTACAAGACTTCGTGGTACCGATCGCAGCTCCTGCCCTCAGGGCGCTTCGTTCCCACGAGCAGGACGTGTTCGACGTGCGGGGCAGAGAAAGCCAATCAGCCCCTGTCGAAACGCGTGTACCACTGCGAGAACTGCGCCACGGTGCTCGACCGTGACGTCAACGCGGCCAAGAACATCCTTCGCGCCGCTCTCGCATCCCACGACGCCCCCGGCATGGAGGAGTCGCAAAACGCCCGTGGAGTGCGTATCGAGACATCTGTCGCGCTACGTTCTGCGAAGCGGGAAGACCCACCGCGAGGTGGGCCACCCCGGCCGAGTAATCGCGTCCGGTCATCTCCCCCCAACGGGGAAGCGAAAGTGAAGGCAAACGCTTCCCCCACCAACTGAAAAGCGCGGAAACACAGCACCCCGCAAG # Right flank : TCCGCATGTAGTTCAGAGCTATCAGCCCAGGCGATCCGCGCTGCGCGCCGCGATTCTGACCCGCGCGGCGCGGCCTACGCATTGGCGTCACTCGCGCCGTCGCCAGGATCGGATGATGCGGGCGAGGCGCCGCGCGCGGTCCTCGTCGGTGATTACCCACGCAATGAGTCCGAAAATGAGGGCGAGTGCTGCTAGTTCCATAGTCGTGCCTTTCGTTCGGGGGCTGCTTTTCCACCCCTTCACTGGGTAATATCGGCACTTTGACAGGGCTTGAGCGGGCCGCTCCTCAACCCCCGTGTGATGATCTGACCATGATCCGTCGTATCGCGCTCATCGCCGCCCCTCTTCTTGCTGCTACTGGGTGCGGTGGTGGTAATTCGGCGCCGAGTGCTGAAGAGCTGGCATCGTCCTCGCCGGCCGCCGCGTCGCGGATTTCTGAGGCAGCAGGGTCGGCTCCCGGCGGTGACGCGCCGACGAAGAGCAGCGGCGTCGATCTTTCG # Questionable array : NO Score: 5.56 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTCGGCCCGCGCACGCGGAGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGATGAGCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 876-298 **** Predicted by CRISPRDetect 2.4 *** >NZ_SUPQ01000018.1 Dermacoccus nishinomiyaensis strain TSA37 NODE_18_length_23780_cov_66.783199, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 875 29 100.0 32 ............................. ATGCACCTTCACATCGACGACGGCCCCTGGTC 814 29 100.0 32 ............................. CCGCGGGATCGAGGTTCGCATCCCTGAAGTCG 753 29 100.0 32 ............................. GGCCCGCATCCACGACCGGCGGCAACGGCGCC 692 29 100.0 32 ............................. CCACGGGATCAACGCCATGAGCGCGAGTCCAC 631 29 96.6 32 .........A................... CGGGGTCACCGCCCGCTGTGGCTGGGGTGATC 570 29 96.6 32 ................G............ GCCGGCACCGAGTTCGGCATCCTCATCGTCAA 509 29 100.0 32 ............................. TGACCCGCAACACGCTGATGAAGTGGGCGAAA 448 29 100.0 32 ............................. GGTTCGTGTGGCCACGGGTTCACCCTCCGCAG 387 29 79.3 32 A........ATA.....A....C...... GAACTCGGTTGAGGTGACGCGCCATGCGGCGT 326 29 89.7 0 ..........T....T.......A..... | ========== ====== ====== ====== ============================= ================================ ================== 10 29 96.2 32 GTCGGCCCCGCGCACGCGGAGATGAGCCC # Left flank : CCTGGCCGCAACGTCGCCGCGAAAGCGGGCCTCAACCGTTCCATCCTCGACGCGAGCTTCGCCGAGATGCGGCGACAACTCACCTACAAGACTTCGTGGTACCGATCGCGGCTCCTGCCCTCAGGGCGCTTCGTTCCCACGAGCAGGACGTGTTCGACGTGCGGGGCAGAGAAAGCCAATCTGCCCCTGTCGGAACGCGTGTACCACTGCGAGAACTGCGCCACGGTGCTTGACCGTGACGTCAACGCGGCGAAGAACGTCCTTCGCACCGCTCTCGCATCCCACGACGCCCCCGGCATGGAGGAGTCGCAAAACGCCCGTGGAGTGCGTATCGAGACATCTGTCGCGCTGCGTTCTGCGAAGCGGGAAGACCCACCGCGAGGTGGGCCACCCCGGCCGAGTAATCGCGTCCGGTCATCTCCCCCCGACGGGAAAGCGAAAGTGAAGGCAAACGCTTCTCCCACCAACTAAAAAGCGCGGAAACACAGCACCCCGCAAGG # Right flank : CCGGCTCGCTGCCACACGTCCACGTCATCATCAGTTGGCTCCACGCACGCGGAGTGCAAAACGCATCATCTGGAGACGGTTTTGGCGCCCTGAGTTTGGCCAAGGGTTTTGCACACCTCTGAGAGACGCTGGGGTTCGCATCTGAGCACCCTGCTGCTCGGTGTGCAGAGATGAAGCGTCCCGGGTGTGATGCCGCTTCCTTTCGAGTTCGAGAGGATGTTGTTCATGCCGAAGAAGTTCGATCCCGAGGTGAAGGACCGCGCGGTGCGGATGGTCCTGGACCGCGTCGAGGAAGCCG # Questionable array : NO Score: 6.07 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCGCACGCGGAGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.10,-6.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA //